Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001877

Physical Location & Seq

Genomic Coordinates Forward (+)

15491508 .. 15494199

Gene Structure 2692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G187900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTCGACTCCTGCGAGGAAGAGGCTGATGAGAGACTTCAAGAGGCTGCAACAAGACCCACCTGCAGGGATTAGTGGGGCGCCCCAAGATAACAATATAATGCTGTGGAATGCTGTTATATTTGGTCCAGATGATACCCCTTGGGATGGAGGCACGTTTAAGTTGACCCTTCAGTTTACAGAGGATTACCCAAACAAACCACCGACAGTCCGATTTGTTTCTCGAATGTTTCATCCAAATATTTATGCAGATGGAAGTATTTGTTTGGATATTTTACAGAATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACATCTATTCAGTCACTACTATGTGATCCCAACCCAAACTCTCCTGCTAATTCAGAAGCTGCTCGCATGTTTAGCGAGAACAAGCGTGAGTACAACCGAAGAGTGAGAGAAATCGTGGAACAGAGTTGGACAGCAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

153

Amino Acids

17.35

Weight (kDa)

5.4

Isoelectric Point (pI)

73.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62540
fragaria_vesca	FvH4_5g15330 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830
malus_domestica	MD06G1189200.v1.1 MD13G1077300.v1.1 MD14G1196200.v1.1 MD16G1077400.v1.1
prunus_persica	Prupe.1G269700_v2.0.a1 Prupe.1G269700_v2.0.a1 Prupe.5G187900_v2.0.a1 Prupe.5G188000_v2.0.a1 Prupe.5G188000_v2.0.a1
pyrus_communis	pycom06g16810 pycom14g16290 pycom16g06670
rosa_chinensis	RchiOBHm_Chr3g0450771 RchiOBHm_Chr3g0450881 RchiOBHm_Chr7g0180751
rosa_laevigata	RLG00000005235 RLG00000025697
rosa_multiflora	Rmu_co8464199.1_g000001 Rmu_sc0000078.1_g000010 Rmu_sc0000078.1_g000023
rosa_roxburghii	Rroxscaffold_3G00272590 Rroxscaffold_6G00428420 Rroxscaffold_6G00428500
rosa_rugosa	Rorug02G0630400 Rorug06G0435500
rosa_samantha	Rh3AG031600 Rh3AG032700 Rh3BG032200 Rh3BG032900 Rh3CG030900 Rh3CG031700 Rh3DG031800 Rh3DG032600 Rh7AG037200 Rh7BG036900 Rh7CG038600 Rh7DG037100
rosa_wichuraiana	Rw3G002420 Rw7G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	70
Acc36I	ACCTGC	1 cut(s)	70
AccB1I	GGYRCC	1 cut(s)	79
AccI	GTMKAC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	155
AcyI	GRCGYC	1 cut(s)	80
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	2 cut(s)	65, 146
AgsI	TTSAA	1 cut(s)	40
AluBI	AGCT	2 cut(s)	311, 377
AluI	AGCT	2 cut(s)	311, 377
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	1 cut(s)	338
AlwNI	CAGNNNCTG	1 cut(s)	377
ApeKI	GCWGC	3 cut(s)	46, 308, 377
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	79
BbvI	GCAGC	3 cut(s)	33, 320, 364
BccI	CCATC	2 cut(s)	140, 245
BcoDI	GTCTC	1 cut(s)	27
BfmI	CTRYAG	1 cut(s)	63
BfoI	RGCGCY	1 cut(s)	83
BfuAI	ACCTGC	1 cut(s)	70
BisI	GCNGC	3 cut(s)	47, 309, 378
BlsI	GCNGC	3 cut(s)	48, 310, 379
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	81
BsaHI	GRCGYC	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 146
BseDI	CCNNGG	1 cut(s)	140
BseGI	GGATG	2 cut(s)	151, 232
BseLI	CCNNNNNNNGG	2 cut(s)	65, 146
BseXI	GCAGC	3 cut(s)	33, 320, 364
BshNI	GGYRCC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	65, 146
BsmAI	GTCTC	1 cut(s)	27
BsmI	GAATGC	1 cut(s)	115
Bsp143I	GATC	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	81
BspMAI	CTGCAG	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	70
BspPI	GGATC	1 cut(s)	338
BspT107I	GGYRCC	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	140
BssMI	GATC	1 cut(s)	343
BssNI	GRCGYC	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	140
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	2 cut(s)	14, 412
BstACI	GRCGYC	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	382
BstF5I	GGATG	2 cut(s)	151, 232
BstH2I	RGCGCY	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	1 cut(s)	346
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	343
BstMWI	GCNNNNNNNGC	1 cut(s)	390
BstNSI	RCATGY	1 cut(s)	388
BstSFI	CTRYAG	1 cut(s)	63
BstV1I	GCAGC	3 cut(s)	33, 320, 364
BtsCI	GGATG	2 cut(s)	151, 232
BtsIMutI	CAGTG	1 cut(s)	290
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	382
CaiI	CAGNNNCTG	1 cut(s)	377
CfoI	GCGC	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	1 cut(s)	385
CviJI	RGCY	4 cut(s)	25, 46, 311, 377
CviKI_1	RGCY	4 cut(s)	25, 46, 311, 377
CviQI	GTAC	1 cut(s)	409
DinI	GGCGCC	1 cut(s)	81
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
Eam1104I	CTCTTC	2 cut(s)	14, 412
EarI	CTCTTC	2 cut(s)	14, 412
Eco130I	CCWWGG	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	155
EcoT14I	CCWWGG	1 cut(s)	140
EgeI	GGCGCC	1 cut(s)	81
EheI	GGCGCC	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	140
FaeI	CATG	1 cut(s)	388
FaiI	YATR	9 cut(s)	98, 119, 246, 296, 298, 300, 314, 340, 386
FatI	CATG	1 cut(s)	384
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	47, 309, 378
FokI	GGATG	2 cut(s)	158, 219
Fsp4HI	GCNGC	3 cut(s)	47, 309, 378
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	3 cut(s)	47, 309, 378
HaeII	RGCGCY	1 cut(s)	83
HhaI	GCGC	1 cut(s)	82
Hin1I	GRCGYC	1 cut(s)	80
Hin1II	CATG	1 cut(s)	388
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HincII	GTYRAC	2 cut(s)	6, 165
HindII	GTYRAC	2 cut(s)	6, 165
HinfI	GANTC	3 cut(s)	7, 280, 289
Hpy166II	GTNNAC	3 cut(s)	6, 165, 177
Hpy188I	TCNGA	2 cut(s)	212, 373
Hpy188III	TCNNGA	3 cut(s)	40, 128, 222
Hpy8I	GTNNAC	3 cut(s)	6, 165, 177
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	3 cut(s)	49, 65, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	390
HpySE526I	ACGT	1 cut(s)	155
Hsp92I	GRCGYC	1 cut(s)	80
Hsp92II	CATG	1 cut(s)	388
HspAI	GCGC	1 cut(s)	80
KasI	GGCGCC	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	343
LpnPI	CCDG	5 cut(s)	24, 51, 75, 141, 375
Lsp1109I	GCAGC	3 cut(s)	33, 320, 364
MaeII	ACGT	1 cut(s)	155
MaeIII	GTNAC	1 cut(s)	330
MalI	GATC	1 cut(s)	345
MboI	GATC	1 cut(s)	343
MboII	GAAGA	2 cut(s)	31, 429
MluCI	AATT	1 cut(s)	367
Mly113I	GGCGCC	1 cut(s)	80
MlyI	GAGTC	1 cut(s)	298
MmeI	TCCRAC	1 cut(s)	425
MnlI	CCTC	5 cut(s)	9, 15, 36, 143, 175
MseI	TTAA	1 cut(s)	159
MslI	CAYNNNNRTG	1 cut(s)	337
Mva1269I	GAATGC	1 cut(s)	115
MwoI	GCNNNNNNNGC	1 cut(s)	390
NarI	GGCGCC	1 cut(s)	80
NdeII	GATC	1 cut(s)	343
NlaIII	CATG	1 cut(s)	388
NlaIV	GGNNCC	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	330
NspI	RCATGY	1 cut(s)	388
PaqCI	CACCTGC	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PctI	GAATGC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	280
PkrI	GCNGC	3 cut(s)	48, 310, 379
PleI	GAGTC	1 cut(s)	297
PluTI	GGCGCC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	1 cut(s)	125
PstI	CTGCAG	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	377
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
RseI	CAYNNNNRTG	1 cut(s)	337
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	3 cut(s)	47, 309, 378
Sau3AI	GATC	1 cut(s)	343
Sau96I	GGNCC	1 cut(s)	125
SbfI	CCTGCAGG	1 cut(s)	67
SchI	GAGTC	1 cut(s)	298
SdaI	CCTGCAGG	1 cut(s)	67
SetI	ASST	4 cut(s)	64, 158, 313, 379
SfcI	CTRYAG	1 cut(s)	63
SfoI	GGCGCC	1 cut(s)	81
SinI	GGWCC	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	337
Sse8387I	CCTGCAGG	1 cut(s)	67
Sse9I	AATT	1 cut(s)	367
SspDI	GGCGCC	1 cut(s)	79
SspI	AATATT	1 cut(s)	241
StyI	CCWWGG	1 cut(s)	140
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	1 cut(s)	158
TaqI	TCGA	2 cut(s)	5, 223
TasI	AATT	1 cut(s)	367
TatI	WGTACW	1 cut(s)	408
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	290
TseFI	GTSAC	1 cut(s)	330
TseI	GCWGC	3 cut(s)	46, 308, 377
Tsp45I	GTSAC	1 cut(s)	330
TspDTI	ATGAA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	125
XceI	RCATGY	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.