Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8464199.1

Orthogroup ID

OG0001877

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1105

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8464199.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

aggactgaactgatgatgttgactccttcaatcaagactctgtcgagggagttggatatgctgcggattgaagaagacccgcctccgggtgtggagatgagtatggtgctacctgacttggacagattgcggcttgtacaagacccacctgctggcgcggagattagtttggtgctcccaggtttggacagattgcggcttgtagaacactcaaccgcaggcggagaggatgtttttgcaaggctgcagaaaaaagtgtcggattacccacccccgggcgcagattatactcgtgcaaggtataggctgtttaaagagttgaagaggctgctacaagacccacctgcagggatcagtgtggttcccccggacttctacaattgcgatataatgtcgtggaatgttgttatagctcctcactccttggattctccttgggagggaggcgcatttaagttgactcttcagtttagtgaggattatccactcaaaccaccaatggtgcgatttgtttctcaaatgtttcatccaaacatttctgcagatggaattatgtcttttaataatttactggatcggtggccttctataaatgacgtggaagatatactcaagtatatccagtccctaatatgtcatcccaacccgaagtgtcctgcaaattctgaagctttctacatgtacttcagtgagaacagactggagtacaaccgaagagtgaggatgatcgtggatcagagttggatggcagactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

251

Amino Acids

28.79

Weight (kDa)

5.11

Isoelectric Point (pI)

61.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62540
fragaria_vesca	FvH4_5g15330 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830
malus_domestica	MD06G1189200.v1.1 MD13G1077300.v1.1 MD14G1196200.v1.1 MD16G1077400.v1.1
prunus_persica	Prupe.1G269700_v2.0.a1 Prupe.1G269700_v2.0.a1 Prupe.5G187900_v2.0.a1 Prupe.5G188000_v2.0.a1 Prupe.5G188000_v2.0.a1
pyrus_communis	pycom06g16810 pycom14g16290 pycom16g06670
rosa_chinensis	RchiOBHm_Chr3g0450771 RchiOBHm_Chr3g0450881 RchiOBHm_Chr7g0180751
rosa_laevigata	RLG00000005235 RLG00000025697
rosa_multiflora	Rmu_co8464199.1_g000001 Rmu_sc0000078.1_g000010 Rmu_sc0000078.1_g000023
rosa_roxburghii	Rroxscaffold_3G00272590 Rroxscaffold_6G00428420 Rroxscaffold_6G00428500
rosa_rugosa	Rorug02G0630400 Rorug06G0435500
rosa_samantha	Rh3AG031600 Rh3AG032700 Rh3BG032200 Rh3BG032900 Rh3CG030900 Rh3CG031700 Rh3DG031800 Rh3DG032600 Rh7AG037200 Rh7BG036900 Rh7CG038600 Rh7DG037100
rosa_wichuraiana	Rw3G002420 Rw7G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	157, 352
Acc36I	ACCTGC	2 cut(s)	157, 352
AccB7I	CCANNNNNTGG	1 cut(s)	152
AccII	CGCG	1 cut(s)	158
AciI	CCGC	7 cut(s)	64, 80, 130, 158, 196, 216, 222
AclWI	GGATC	3 cut(s)	359, 582, 741
AcsI	RAATTY	1 cut(s)	661
AcuI	CTGAAG	3 cut(s)	449, 670, 687
AfaI	GTAC	3 cut(s)	138, 683, 707
AfiI	CCNNNNNNNGG	8 cut(s)	85, 86, 152, 184, 274, 275, 347, 440
AflIII	ACRYGT	1 cut(s)	678
AgsI	TTSAA	3 cut(s)	30, 71, 322
AjiI	CACGTC	1 cut(s)	598
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	2 cut(s)	413, 671
AluI	AGCT	2 cut(s)	413, 671
Alw21I	GWGCWC	1 cut(s)	177
AlwI	GGATC	3 cut(s)	359, 582, 741
Ama87I	CYCGRG	1 cut(s)	274
AoxI	GGCC	1 cut(s)	581
ApeKI	GCWGC	3 cut(s)	61, 244, 328
ApoI	RAATTY	1 cut(s)	661
AspLEI	GCGC	3 cut(s)	158, 281, 449
AsuC2I	CCSGG	4 cut(s)	87, 275, 276, 368
AvaI	CYCGRG	1 cut(s)	274
BauI	CACGAG	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	3 cut(s)	48, 231, 315
BccI	CCATC	2 cut(s)	539, 739
BciT130I	CCWGG	1 cut(s)	180
BcnI	CCSGG	4 cut(s)	87, 275, 276, 368
BfaI	CTAG	1 cut(s)	754
BfmI	CTRYAG	3 cut(s)	245, 345, 540
BfuAI	ACCTGC	2 cut(s)	157, 352
BisI	GCNGC	5 cut(s)	62, 131, 197, 245, 329
BlsI	GCNGC	5 cut(s)	63, 132, 198, 246, 330
Bme1390I	CCNGG	5 cut(s)	87, 180, 275, 276, 368
BmeT110I	CYCGRG	1 cut(s)	274
BmgBI	CACGTC	1 cut(s)	598
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	5 cut(s)	87, 180, 275, 276, 368
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	722
BpuEI	CTTGAG	1 cut(s)	596
BpuMI	CCSGG	4 cut(s)	87, 275, 276, 368
BsaJI	CCNNGG	6 cut(s)	178, 273, 274, 366, 423, 434
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bsc4I	CCNNNNNNNGG	8 cut(s)	85, 86, 152, 184, 274, 275, 347, 440
Bse1I	ACTGG	3 cut(s)	576, 622, 705
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	6 cut(s)	178, 273, 274, 366, 423, 434
BseGI	GGATG	5 cut(s)	235, 526, 637, 729, 750
BseLI	CCNNNNNNNGG	8 cut(s)	85, 86, 152, 184, 274, 275, 347, 440
BseNI	ACTGG	3 cut(s)	576, 622, 705
BseRI	GAGGAG	1 cut(s)	405
BseXI	GCAGC	3 cut(s)	48, 231, 315
Bsh1236I	CGCG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	583
BsiHKAI	GWGCWC	1 cut(s)	177
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	3 cut(s)	86, 275, 368
BslFI	GGGAC	1 cut(s)	610
BslI	CCNNNNNNNGG	8 cut(s)	85, 86, 152, 184, 274, 275, 347, 440
BsmFI	GGGAC	1 cut(s)	610
BsnI	GGCC	1 cut(s)	583
BsoBI	CYCGRG	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp1407I	TGTACA	1 cut(s)	136
Bsp143I	GATC	4 cut(s)	351, 574, 726, 733
BspACI	CCGC	7 cut(s)	64, 80, 130, 158, 196, 216, 222
BspANI	GGCC	1 cut(s)	583
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	1 cut(s)	363
BspMAI	CTGCAG	3 cut(s)	249, 349, 544
BspMI	ACCTGC	2 cut(s)	157, 352
BspPI	GGATC	3 cut(s)	359, 582, 741
BsrGI	TGTACA	1 cut(s)	136
BsrI	ACTGG	3 cut(s)	576, 622, 705
BssECI	CCNNGG	6 cut(s)	178, 273, 274, 366, 423, 434
BssMI	GATC	4 cut(s)	351, 574, 726, 733
BssSI	CACGAG	1 cut(s)	291
BssT1I	CCWWGG	2 cut(s)	423, 434
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	180
Bst6I	CTCTTC	3 cut(s)	317, 468, 709
BstAUI	TGTACA	1 cut(s)	136
BstC8I	GCNNGC	2 cut(s)	154, 220
BstF5I	GGATG	5 cut(s)	235, 526, 637, 729, 750
BstFNI	CGCG	1 cut(s)	158
BstHHI	GCGC	3 cut(s)	158, 281, 449
BstKTI	GATC	4 cut(s)	354, 577, 729, 736
BstMBI	GATC	4 cut(s)	351, 574, 726, 733
BstNI	CCWGG	1 cut(s)	180
BstNSI	RCATGY	1 cut(s)	682
BstSCI	CCNGG	5 cut(s)	85, 178, 273, 274, 366
BstSFI	CTRYAG	3 cut(s)	245, 345, 540
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	3 cut(s)	48, 231, 315
BstV2I	GAAGAC	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	583
BtrI	CACGTC	1 cut(s)	598
BtsCI	GGATG	5 cut(s)	235, 526, 637, 729, 750
BtsIMutI	CAGTG	2 cut(s)	361, 694
BveI	ACCTGC	2 cut(s)	157, 352
Cac8I	GCNNGC	2 cut(s)	154, 220
CfoI	GCGC	3 cut(s)	158, 281, 449
Cfr9I	CCCGGG	1 cut(s)	274
Csp6I	GTAC	3 cut(s)	137, 682, 706
CviAII	CATG	1 cut(s)	679
CviJI	RGCY	8 cut(s)	133, 199, 244, 307, 328, 413, 583, 671
CviKI_1	RGCY	8 cut(s)	133, 199, 244, 307, 328, 413, 583, 671
CviQI	GTAC	3 cut(s)	137, 682, 706
DpnI	GATC	4 cut(s)	353, 576, 728, 735
DpnII	GATC	4 cut(s)	351, 574, 726, 733
DraI	TTTAAA	1 cut(s)	313
Eam1104I	CTCTTC	3 cut(s)	317, 468, 709
EarI	CTCTTC	3 cut(s)	317, 468, 709
EciI	GGCGGA	1 cut(s)	237
Eco130I	CCWWGG	2 cut(s)	423, 434
Eco57I	CTGAAG	3 cut(s)	449, 670, 687
Eco88I	CYCGRG	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	178
EcoT14I	CCWWGG	2 cut(s)	423, 434
ErhI	CCWWGG	2 cut(s)	423, 434
FaeI	CATG	1 cut(s)	682
FaqI	GGGAC	1 cut(s)	610
FatI	CATG	1 cut(s)	678
FauI	CCCGC	1 cut(s)	87
Fnu4HI	GCNGC	5 cut(s)	62, 131, 197, 245, 329
FokI	GGATG	4 cut(s)	242, 513, 624, 736
Fsp4HI	GCNGC	5 cut(s)	62, 131, 197, 245, 329
FspBI	CTAG	1 cut(s)	754
GlaI	GCGC	3 cut(s)	157, 280, 448
GluI	GCNGC	5 cut(s)	62, 131, 197, 245, 329
GsuI	CTGGAG	1 cut(s)	722
HaeIII	GGCC	1 cut(s)	583
HapII	CCGG	3 cut(s)	86, 275, 368
HhaI	GCGC	3 cut(s)	158, 281, 449
Hin1II	CATG	1 cut(s)	682
Hin6I	GCGC	3 cut(s)	156, 279, 447
HinP1I	GCGC	3 cut(s)	156, 279, 447
HincII	GTYRAC	2 cut(s)	21, 459
HindII	GTYRAC	2 cut(s)	21, 459
HindIII	AAGCTT	1 cut(s)	669
HinfI	GANTC	4 cut(s)	22, 37, 428, 460
HpaII	CCGG	3 cut(s)	86, 275, 368
Hpy166II	GTNNAC	2 cut(s)	21, 459
Hpy188I	TCNGA	3 cut(s)	262, 667, 738
Hpy188III	TCNNGA	1 cut(s)	34
Hpy8I	GTNNAC	2 cut(s)	21, 459
HpyAV	CCTTC	2 cut(s)	36, 594
HpyCH4IV	ACGT	1 cut(s)	597
HpyCH4V	TGCA	6 cut(s)	239, 247, 296, 347, 542, 659
HpySE526I	ACGT	1 cut(s)	597
Hsp92II	CATG	1 cut(s)	682
HspAI	GCGC	3 cut(s)	156, 279, 447
Kzo9I	GATC	4 cut(s)	351, 574, 726, 733
LmnI	GCTCC	2 cut(s)	180, 418
Lsp1109I	GCAGC	3 cut(s)	48, 231, 315
MaeI	CTAG	1 cut(s)	754
MaeII	ACGT	1 cut(s)	597
MalI	GATC	4 cut(s)	353, 576, 728, 735
MboI	GATC	4 cut(s)	351, 574, 726, 733
MboII	GAAGA	6 cut(s)	83, 86, 334, 455, 614, 726
MfeI	CAATTG	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	4 cut(s)	379, 549, 565, 661
MlyI	GAGTC	3 cut(s)	16, 31, 454
MmeI	TCCRAC	3 cut(s)	33, 240, 722
MnlI	CCTC	9 cut(s)	39, 93, 220, 318, 426, 433, 437, 469, 714
MseI	TTAA	3 cut(s)	312, 453, 561
MspI	CCGG	3 cut(s)	86, 275, 368
MspR9I	CCNGG	5 cut(s)	87, 180, 275, 276, 368
MunI	CAATTG	1 cut(s)	379
MvaI	CCWGG	1 cut(s)	180
MvnI	CGCG	1 cut(s)	158
NciI	CCSGG	4 cut(s)	87, 275, 276, 368
NdeII	GATC	4 cut(s)	351, 574, 726, 733
NlaIII	CATG	1 cut(s)	682
NlaIV	GGNNCC	1 cut(s)	363
NspI	RCATGY	1 cut(s)	682
PaqCI	CACCTGC	2 cut(s)	157, 352
PciI	ACATGT	1 cut(s)	678
PfeI	GAWTC	1 cut(s)	428
PflFI	GACNNNGTC	1 cut(s)	40
PflMI	CCANNNNNTGG	1 cut(s)	152
PkrI	GCNGC	5 cut(s)	63, 132, 198, 246, 330
PleI	GAGTC	3 cut(s)	16, 31, 454
PpsI	GAGTC	3 cut(s)	16, 31, 454
PscI	ACATGT	1 cut(s)	678
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	363
PstI	CTGCAG	3 cut(s)	249, 349, 544
PsyI	GACNNNGTC	1 cut(s)	40
RsaI	GTAC	3 cut(s)	138, 683, 707
RsaNI	GTAC	3 cut(s)	137, 682, 706
SaqAI	TTAA	3 cut(s)	312, 453, 561
SatI	GCNGC	5 cut(s)	62, 131, 197, 245, 329
Sau3AI	GATC	4 cut(s)	351, 574, 726, 733
SbfI	CCTGCAGG	1 cut(s)	349
SchI	GAGTC	3 cut(s)	16, 31, 454
ScrFI	CCNGG	5 cut(s)	87, 180, 275, 276, 368
SdaI	CCTGCAGG	1 cut(s)	349
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	8 cut(s)	115, 151, 184, 302, 346, 415, 600, 673
SfcI	CTRYAG	3 cut(s)	245, 345, 540
SmaI	CCCGGG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
Sse8387I	CCTGCAGG	1 cut(s)	349
Sse9I	AATT	4 cut(s)	379, 549, 565, 661
SsiI	CCGC	7 cut(s)	64, 80, 130, 158, 196, 216, 222
SspMI	CTAG	1 cut(s)	754
StyD4I	CCNGG	5 cut(s)	85, 178, 273, 274, 366
StyI	CCWWGG	2 cut(s)	423, 434
TaiI	ACGT	1 cut(s)	600
TaqI	TCGA	1 cut(s)	44
TasI	AATT	4 cut(s)	379, 549, 565, 661
TatI	WGTACW	3 cut(s)	136, 681, 705
TauI	GCSGC	2 cut(s)	133, 199
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	3 cut(s)	312, 453, 561
Tru9I	TTAA	3 cut(s)	312, 453, 561
TscAI	CASTG	2 cut(s)	361, 694
TseI	GCWGC	3 cut(s)	61, 244, 328
TspDTI	ATGAA	1 cut(s)	515
TspMI	CCCGGG	1 cut(s)	274
TspRI	CASTG	2 cut(s)	361, 694
Tth111I	GACNNNGTC	1 cut(s)	40
Van91I	CCANNNNNTGG	1 cut(s)	152
XapI	RAATTY	1 cut(s)	661
XceI	RCATGY	1 cut(s)	682
XmaI	CCCGGG	1 cut(s)	274
XspI	CTAG	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.