Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001877

Physical Location & Seq

Genomic Coordinates Forward (+)

20950361 .. 20951618

Gene Structure 1258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g16810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAGAGACTTCAAGAGGCTGCAACAGGACCCGCCTGCAGGGATTAGTGGGGCGCCACAGGATAACAATATAATGTTGTGGAATGCTGTTATATTTGGTCCCGATGATACTCCTTGGGATGGAGGCACATTTAAGTTGACTCTTCAGTTTACGGAGGATTATCCAAACAAACCACCAACAGTCCGGTTTGTTTCTAGGATGTTTCATCCAAATATTTATGCGGATGGAAGTATTTGTTTGGATATTTTACAGAATCAGTGGAGTCCTATATATGACGTGGCAGCTATACTCACGTCCATCCAGTCACTACTATGTGATCCCAACCCAAACTCTCCTGCAAATTCAGAAGCTGCTCGCATGTTTAGCGAGAACAAGCGTGAGTACAACCGAAGAGTGAGGGAAATCGTGGAACAGAGTTGGACAGCAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

144

Amino Acids

16.31

Weight (kDa)

4.79

Isoelectric Point (pI)

70.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62540
fragaria_vesca	FvH4_5g15330 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830
malus_domestica	MD06G1189200.v1.1 MD13G1077300.v1.1 MD14G1196200.v1.1 MD16G1077400.v1.1
prunus_persica	Prupe.1G269700_v2.0.a1 Prupe.1G269700_v2.0.a1 Prupe.5G187900_v2.0.a1 Prupe.5G188000_v2.0.a1 Prupe.5G188000_v2.0.a1
pyrus_communis	pycom06g16810 pycom14g16290 pycom16g06670
rosa_chinensis	RchiOBHm_Chr3g0450771 RchiOBHm_Chr3g0450881 RchiOBHm_Chr7g0180751
rosa_laevigata	RLG00000005235 RLG00000025697
rosa_multiflora	Rmu_co8464199.1_g000001 Rmu_sc0000078.1_g000010 Rmu_sc0000078.1_g000023
rosa_roxburghii	Rroxscaffold_3G00272590 Rroxscaffold_6G00428420 Rroxscaffold_6G00428500
rosa_rugosa	Rorug02G0630400 Rorug06G0435500
rosa_samantha	Rh3AG031600 Rh3AG032700 Rh3BG032200 Rh3BG032900 Rh3CG030900 Rh3CG031700 Rh3DG031800 Rh3DG032600 Rh7AG037200 Rh7BG036900 Rh7CG038600 Rh7DG037100
rosa_wichuraiana	Rw3G002420 Rw7G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	52
AciI	CCGC	2 cut(s)	32, 221
AclWI	GGATC	1 cut(s)	311
AcsI	RAATTY	1 cut(s)	340
AcuI	CTGAAG	1 cut(s)	128
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	2 cut(s)	38, 119
AgsI	TTSAA	1 cut(s)	13
AjiI	CACGTC	2 cut(s)	277, 294
AluBI	AGCT	2 cut(s)	284, 350
AluI	AGCT	2 cut(s)	284, 350
AlwI	GGATC	1 cut(s)	311
AlwNI	CAGNNNCTG	1 cut(s)	350
ApeKI	GCWGC	3 cut(s)	19, 281, 350
ApoI	RAATTY	1 cut(s)	340
AspLEI	GCGC	1 cut(s)	55
AspS9I	GGNCC	2 cut(s)	28, 98
AvaII	GGWCC	2 cut(s)	28, 98
BanI	GGYRCC	1 cut(s)	52
BbvI	GCAGC	3 cut(s)	6, 293, 337
BccI	CCATC	3 cut(s)	113, 218, 305
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	56
BisI	GCNGC	3 cut(s)	20, 282, 351
BlsI	GCNGC	3 cut(s)	21, 283, 352
Bme18I	GGWCC	2 cut(s)	28, 98
BmgBI	CACGTC	2 cut(s)	277, 294
BmgT120I	GGNCC	2 cut(s)	28, 98
BmiI	GGNNCC	3 cut(s)	30, 54, 100
BsaHI	GRCGYC	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	113
BsaWI	WCCGGW	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 119
Bse1I	ACTGG	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	5 cut(s)	124, 204, 205, 229, 297
BseLI	CCNNNNNNNGG	2 cut(s)	38, 119
BseNI	ACTGG	1 cut(s)	301
BseXI	GCAGC	3 cut(s)	6, 293, 337
BshNI	GGYRCC	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	184
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	2 cut(s)	38, 119
BsmFI	GGGAC	1 cut(s)	84
BsmI	GAATGC	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	316
BspACI	CCGC	2 cut(s)	32, 221
BspLI	GGNNCC	3 cut(s)	30, 54, 100
BspMAI	CTGCAG	1 cut(s)	40
BspPI	GGATC	1 cut(s)	311
BspT107I	GGYRCC	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	1 cut(s)	316
BssNI	GRCGYC	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	2 cut(s)	147, 385
BstACI	GRCGYC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	36, 355
BstF5I	GGATG	5 cut(s)	124, 204, 205, 229, 297
BstH2I	RGCGCY	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	1 cut(s)	363
BstNSI	RCATGY	1 cut(s)	361
BstSFI	CTRYAG	1 cut(s)	36
BstV1I	GCAGC	3 cut(s)	6, 293, 337
BtrI	CACGTC	2 cut(s)	277, 294
BtsCI	GGATG	5 cut(s)	124, 204, 205, 229, 297
BtsIMutI	CAGTG	1 cut(s)	263
Cac8I	GCNNGC	2 cut(s)	36, 355
CaiI	CAGNNNCTG	1 cut(s)	350
CfoI	GCGC	1 cut(s)	55
Cfr13I	GGNCC	2 cut(s)	28, 98
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	1 cut(s)	358
CviJI	RGCY	3 cut(s)	19, 284, 350
CviKI_1	RGCY	3 cut(s)	19, 284, 350
CviQI	GTAC	1 cut(s)	382
DinI	GGCGCC	1 cut(s)	54
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
Eam1104I	CTCTTC	2 cut(s)	147, 385
EarI	CTCTTC	2 cut(s)	147, 385
Eco130I	CCWWGG	1 cut(s)	113
Eco47I	GGWCC	2 cut(s)	28, 98
Eco57I	CTGAAG	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	113
EgeI	GGCGCC	1 cut(s)	54
EheI	GGCGCC	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	1 cut(s)	361
FaiI	YATR	9 cut(s)	71, 92, 219, 269, 271, 273, 287, 313, 359
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	1 cut(s)	357
FauI	CCCGC	1 cut(s)	39
Fnu4HI	GCNGC	3 cut(s)	20, 282, 351
FokI	GGATG	5 cut(s)	131, 192, 211, 236, 284
Fsp4HI	GCNGC	3 cut(s)	20, 282, 351
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	3 cut(s)	20, 282, 351
HaeII	RGCGCY	1 cut(s)	56
HapII	CCGG	1 cut(s)	184
HhaI	GCGC	1 cut(s)	55
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	1 cut(s)	361
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HinfI	GANTC	3 cut(s)	139, 253, 262
HpaII	CCGG	1 cut(s)	184
Hpy166II	GTNNAC	2 cut(s)	138, 150
Hpy188I	TCNGA	1 cut(s)	346
Hpy188III	TCNNGA	2 cut(s)	13, 101
Hpy8I	GTNNAC	2 cut(s)	138, 150
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	2 cut(s)	276, 293
HpyCH4V	TGCA	3 cut(s)	22, 38, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	363
HpySE526I	ACGT	2 cut(s)	276, 293
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	361
HspAI	GCGC	1 cut(s)	53
KasI	GGCGCC	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	316
LpnPI	CCDG	7 cut(s)	11, 24, 44, 48, 197, 314, 348
Lsp1109I	GCAGC	3 cut(s)	6, 293, 337
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	2 cut(s)	276, 293
MaeIII	GTNAC	1 cut(s)	303
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	2 cut(s)	134, 402
MluCI	AATT	1 cut(s)	340
Mly113I	GGCGCC	1 cut(s)	53
MlyI	GAGTC	2 cut(s)	133, 271
MmeI	TCCRAC	1 cut(s)	398
MnlI	CCTC	4 cut(s)	9, 116, 148, 390
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	1 cut(s)	310
MspI	CCGG	1 cut(s)	184
Mva1269I	GAATGC	1 cut(s)	88
MwoI	GCNNNNNNNGC	1 cut(s)	363
NarI	GGCGCC	1 cut(s)	53
NdeII	GATC	1 cut(s)	316
NlaIII	CATG	1 cut(s)	361
NlaIV	GGNNCC	3 cut(s)	30, 54, 100
NmuCI	GTSAC	1 cut(s)	303
NspI	RCATGY	1 cut(s)	361
PctI	GAATGC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	253
PkrI	GCNGC	3 cut(s)	21, 283, 352
PleI	GAGTC	2 cut(s)	133, 270
PluTI	GGCGCC	1 cut(s)	56
PpsI	GAGTC	2 cut(s)	133, 270
PpuMI	RGGWCCY	1 cut(s)	28
Psp5II	RGGWCCY	1 cut(s)	28
PspN4I	GGNNCC	3 cut(s)	30, 54, 100
PspPI	GGNCC	2 cut(s)	28, 98
PspPPI	RGGWCCY	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	40
PstNI	CAGNNNCTG	1 cut(s)	350
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
RseI	CAYNNNNRTG	1 cut(s)	310
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	3 cut(s)	20, 282, 351
Sau3AI	GATC	1 cut(s)	316
Sau96I	GGNCC	2 cut(s)	28, 98
SbfI	CCTGCAGG	1 cut(s)	40
SchI	GAGTC	2 cut(s)	133, 271
SdaI	CCTGCAGG	1 cut(s)	40
SetI	ASST	4 cut(s)	279, 286, 296, 352
SfcI	CTRYAG	1 cut(s)	36
SfoI	GGCGCC	1 cut(s)	54
SinI	GGWCC	2 cut(s)	28, 98
SmiMI	CAYNNNNRTG	1 cut(s)	310
Sse8387I	CCTGCAGG	1 cut(s)	40
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	2 cut(s)	32, 221
SspDI	GGCGCC	1 cut(s)	52
SspI	AATATT	1 cut(s)	214
SspMI	CTAG	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	2 cut(s)	279, 296
TasI	AATT	1 cut(s)	340
TatI	WGTACW	1 cut(s)	381
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	1 cut(s)	263
TseFI	GTSAC	1 cut(s)	303
TseI	GCWGC	3 cut(s)	19, 281, 350
Tsp45I	GTSAC	1 cut(s)	303
TspDTI	ATGAA	1 cut(s)	194
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	263
VpaK11BI	GGWCC	2 cut(s)	28, 98
XapI	RAATTY	1 cut(s)	340
XceI	RCATGY	1 cut(s)	361
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.