Rh7CG038600

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001877
Physical Location & Seq
Forward (+)
2609112 .. 2611887
2776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG038600.1

Sequence Viewer

Length: 528 bp
ATGCCCAACCCGATTCGGATCGAGACCTCTTGGAGATTCGGAGGAGCTCCAGGTGGTAGCGGGGTAGTAATGTCGACTCCTGCAAGGAAGAGGCTGATGAGAGACTTCAAGAGGCTGCAACAGGACCCACCTGCAGGGATTAGTGGGGCTCCCCAAGACAACAATATAATGCTGTGGAATGCCGTTATATTTGGTCCTGATGATACCCCTTGGGATGGAGGCACGTTTAAGTTGACTCTTCAGTTCACAGAAGATTATCCAAACAAACCACCAACGGTGCGATTTGTTTCTCGAATGTTTCATCCAAATATTTATGCCGATGGAAGTATTTGTTTAGATATTTTGCAAAATCAGTGGAGTCCTATTTATGACGTGGCAGCTATACTCACATCTATCCAGTCACTACTATGTGATCCGAACCCAAATTCTCCTGCAAATTCAGAAGCTGCTCGCATGTTCAGCGAGAACAAGCGAGAGTACAACCGAAGAGTTAGGGAAATCGTGGAACAGAGTTGGACAGCAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
UQ_con

Protein Analysis

175

Amino Acids

19.72

Weight (kDa)

5.85

Isoelectric Point (pI)

71.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 31 - 167 9.5e-54 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 139
Acc36I ACCTGC 1 cut(s) 139
AccI GTMKAC 1 cut(s) 74
AciI CCGC 1 cut(s) 60
AclWI GGATC 2 cut(s) 26, 407
AcsI RAATTY 2 cut(s) 424, 436
AcuI CTGAAG 1 cut(s) 224
AfaI GTAC 1 cut(s) 479
AfiI CCNNNNNNNGG 2 cut(s) 134, 215
AgsI TTSAA 1 cut(s) 109
AjiI CACGTC 1 cut(s) 373
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 3 cut(s) 47, 380, 446
AluI AGCT 3 cut(s) 47, 380, 446
Alw21I GWGCWC 1 cut(s) 49
Alw26I GTCTC 2 cut(s) 17, 96
AlwI GGATC 2 cut(s) 26, 407
AlwNI CAGNNNCTG 1 cut(s) 446
ApeKI GCWGC 3 cut(s) 115, 377, 446
ApoI RAATTY 2 cut(s) 424, 436
AspS9I GGNCC 2 cut(s) 124, 194
AvaII GGWCC 2 cut(s) 124, 194
BanII GRGCYC 2 cut(s) 49, 151
Bbv12I GWGCWC 1 cut(s) 49
BbvI GCAGC 3 cut(s) 102, 389, 433
BccI CCATC 2 cut(s) 209, 314
BceAI ACGGC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 51
BcoDI GTCTC 2 cut(s) 17, 96
BfmI CTRYAG 1 cut(s) 132
BfuAI ACCTGC 1 cut(s) 139
BisI GCNGC 3 cut(s) 116, 378, 447
BlsI GCNGC 3 cut(s) 117, 379, 448
Bme1390I CCNGG 1 cut(s) 51
Bme18I GGWCC 2 cut(s) 124, 194
BmgBI CACGTC 1 cut(s) 373
BmgT120I GGNCC 2 cut(s) 124, 194
BmiI GGNNCC 2 cut(s) 126, 150
BmrFI CCNGG 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 33
BsaBI GATNNNNATC 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 209
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 215
Bse1I ACTGG 1 cut(s) 397
Bse8I GATNNNNATC 1 cut(s) 17
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 209
BseGI GGATG 2 cut(s) 220, 301
BseJI GATNNNNATC 1 cut(s) 17
BseLI CCNNNNNNNGG 2 cut(s) 134, 215
BseNI ACTGG 1 cut(s) 397
BseRI GAGGAG 1 cut(s) 57
BseXI GCAGC 3 cut(s) 102, 389, 433
BsiHKAI GWGCWC 1 cut(s) 49
BslI CCNNNNNNNGG 2 cut(s) 134, 215
BsmAI GTCTC 2 cut(s) 17, 96
BsmI GAATGC 1 cut(s) 184
Bso31I GGTCTC 1 cut(s) 17
Bsp1286I GDGCHC 2 cut(s) 49, 151
Bsp143I GATC 2 cut(s) 18, 412
BspACI CCGC 1 cut(s) 60
BspLI GGNNCC 2 cut(s) 126, 150
BspMAI CTGCAG 1 cut(s) 136
BspMI ACCTGC 1 cut(s) 139
BspPI GGATC 2 cut(s) 26, 407
BspTNI GGTCTC 1 cut(s) 17
BsrI ACTGG 1 cut(s) 397
BssECI CCNNGG 1 cut(s) 209
BssMI GATC 2 cut(s) 18, 412
BssT1I CCWWGG 1 cut(s) 209
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 277
Bst6I CTCTTC 3 cut(s) 83, 243, 481
BstC8I GCNNGC 1 cut(s) 451
BstF5I GGATG 2 cut(s) 220, 301
BstKTI GATC 2 cut(s) 21, 415
BstMAI GTCTC 2 cut(s) 17, 96
BstMBI GATC 2 cut(s) 18, 412
BstMWI GCNNNNNNNGC 1 cut(s) 459
BstNI CCWGG 1 cut(s) 51
BstNSI RCATGY 1 cut(s) 457
BstSCI CCNGG 1 cut(s) 49
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 3 cut(s) 102, 389, 433
BtrI CACGTC 1 cut(s) 373
BtsCI GGATG 2 cut(s) 220, 301
BtsIMutI CAGTG 1 cut(s) 359
BveI ACCTGC 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 451
CaiI CAGNNNCTG 1 cut(s) 446
Cfr13I GGNCC 2 cut(s) 124, 194
Csp6I GTAC 1 cut(s) 478
CspCI CAANNNNNGTGG 2 cut(s) 335, 370
CviAII CATG 1 cut(s) 454
CviJI RGCY 6 cut(s) 47, 94, 115, 149, 380, 446
CviKI_1 RGCY 6 cut(s) 47, 94, 115, 149, 380, 446
CviQI GTAC 1 cut(s) 478
DpnI GATC 2 cut(s) 20, 414
DpnII GATC 2 cut(s) 18, 412
Eam1104I CTCTTC 3 cut(s) 83, 243, 481
EarI CTCTTC 3 cut(s) 83, 243, 481
Ecl136II GAGCTC 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 209
Eco24I GRGCYC 2 cut(s) 49, 151
Eco31I GGTCTC 1 cut(s) 17
Eco47I GGWCC 2 cut(s) 124, 194
Eco53kI GAGCTC 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 224
EcoICRI GAGCTC 1 cut(s) 47
EcoO109I RGGNCCY 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 209
EcoT38I GRGCYC 2 cut(s) 49, 151
ErhI CCWWGG 1 cut(s) 209
FaeI CATG 1 cut(s) 457
FaiI YATR 7 cut(s) 167, 188, 315, 369, 383, 409, 455
FatI CATG 1 cut(s) 453
FauI CCCGC 1 cut(s) 53
FblI GTMKAC 1 cut(s) 74
Fnu4HI GCNGC 3 cut(s) 116, 378, 447
FokI GGATG 2 cut(s) 227, 288
FriOI GRGCYC 2 cut(s) 49, 151
Fsp4HI GCNGC 3 cut(s) 116, 378, 447
GluI GCNGC 3 cut(s) 116, 378, 447
GsuI CTGGAG 1 cut(s) 33
Hin1II CATG 1 cut(s) 457
HincII GTYRAC 2 cut(s) 75, 234
HindII GTYRAC 2 cut(s) 75, 234
HinfI GANTC 5 cut(s) 13, 36, 76, 235, 358
Hpy166II GTNNAC 3 cut(s) 75, 234, 246
Hpy188I TCNGA 4 cut(s) 18, 41, 417, 442
Hpy188III TCNNGA 4 cut(s) 22, 109, 197, 291
Hpy8I GTNNAC 3 cut(s) 75, 234, 246
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4IV ACGT 2 cut(s) 224, 372
HpyCH4V TGCA 5 cut(s) 83, 118, 134, 346, 434
HpyF10VI GCNNNNNNNGC 1 cut(s) 459
HpySE526I ACGT 2 cut(s) 224, 372
Hsp92II CATG 1 cut(s) 457
Kzo9I GATC 2 cut(s) 18, 412
LmnI GCTCC 3 cut(s) 44, 52, 154
LpnPI CCDG 9 cut(s) 36, 63, 93, 107, 120, 144, 210, 410, 444
Lsp1109I GCAGC 3 cut(s) 102, 389, 433
MaeII ACGT 2 cut(s) 224, 372
MaeIII GTNAC 1 cut(s) 399
MalI GATC 2 cut(s) 20, 414
MboI GATC 2 cut(s) 18, 412
MboII GAAGA 4 cut(s) 100, 230, 263, 498
MhlI GDGCHC 2 cut(s) 49, 151
MluCI AATT 2 cut(s) 424, 436
MlyI GAGTC 3 cut(s) 70, 229, 367
MmeI TCCRAC 1 cut(s) 494
MnlI CCTC 5 cut(s) 35, 37, 84, 105, 212
MseI TTAA 1 cut(s) 228
MslI CAYNNNNRTG 1 cut(s) 406
MspR9I CCNGG 1 cut(s) 51
Mva1269I GAATGC 1 cut(s) 184
MvaI CCWGG 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 459
NdeII GATC 2 cut(s) 18, 412
NlaIII CATG 1 cut(s) 457
NlaIV GGNNCC 2 cut(s) 126, 150
NmuCI GTSAC 1 cut(s) 399
NspI RCATGY 1 cut(s) 457
PaqCI CACCTGC 1 cut(s) 139
PctI GAATGC 1 cut(s) 184
PfeI GAWTC 2 cut(s) 13, 36
PkrI GCNGC 3 cut(s) 117, 379, 448
PleI GAGTC 3 cut(s) 70, 229, 366
PpsI GAGTC 3 cut(s) 70, 229, 366
PpuMI RGGWCCY 1 cut(s) 124
Psp124BI GAGCTC 1 cut(s) 49
Psp5II RGGWCCY 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 2 cut(s) 126, 150
PspPI GGNCC 2 cut(s) 124, 194
PspPPI RGGWCCY 1 cut(s) 124
PstI CTGCAG 1 cut(s) 136
PstNI CAGNNNCTG 1 cut(s) 446
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
RseI CAYNNNNRTG 1 cut(s) 406
SacI GAGCTC 1 cut(s) 49
SalI GTCGAC 1 cut(s) 73
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 3 cut(s) 116, 378, 447
Sau3AI GATC 2 cut(s) 18, 412
Sau96I GGNCC 2 cut(s) 124, 194
SbfI CCTGCAGG 1 cut(s) 136
SchI GAGTC 3 cut(s) 70, 229, 367
ScrFI CCNGG 1 cut(s) 51
SdaI CCTGCAGG 1 cut(s) 136
SduI GDGCHC 2 cut(s) 49, 151
SetI ASST 8 cut(s) 29, 49, 55, 133, 227, 375, 382, 448
SfcI CTRYAG 1 cut(s) 132
SinI GGWCC 2 cut(s) 124, 194
SmiMI CAYNNNNRTG 1 cut(s) 406
Sse8387I CCTGCAGG 1 cut(s) 136
Sse9I AATT 2 cut(s) 424, 436
SsiI CCGC 1 cut(s) 60
SspI AATATT 1 cut(s) 310
SstI GAGCTC 1 cut(s) 49
StyD4I CCNGG 1 cut(s) 49
StyI CCWWGG 1 cut(s) 209
TaaI ACNGT 1 cut(s) 277
TaiI ACGT 2 cut(s) 227, 375
TaqI TCGA 3 cut(s) 21, 74, 292
TasI AATT 2 cut(s) 424, 436
TatI WGTACW 1 cut(s) 477
TfiI GAWTC 2 cut(s) 13, 36
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 1 cut(s) 359
TseFI GTSAC 1 cut(s) 399
TseI GCWGC 3 cut(s) 115, 377, 446
Tsp45I GTSAC 1 cut(s) 399
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 1 cut(s) 359
VpaK11BI GGWCC 2 cut(s) 124, 194
XapI RAATTY 2 cut(s) 424, 436
XceI RCATGY 1 cut(s) 457
XmiI GTMKAC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.