Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000078.1

Orthogroup ID

OG0001877

Physical Location & Seq

Genomic Coordinates Reverse (-)

43860 .. 44875

Gene Structure 1016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000078.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgttgactccttcaatcaagactctgtcgagggagttggatatgctgcggattgaagaagacccgcctccgggtgtggagatgagtatggtgctacctgacttggacagattgatgcttgtacaagacccacctgctggcgcggagattagtttggtgctcccaggtttggacagattgcggcttgtagaacactcaaccgcaggcggagaggatgtttttgcaaggctgcagaaaaaagtgtcggattacccacccccgggcgcagattatactcgtgcaaggtataggctgtttaaagagttgaagaggctgctacaagacccacctgcagggatcagtgtggttcccccggacttctacaattgcgatataatgtcgtggaatgttgttatagctcctcactccttggattctccttgggagggaggcgcatttaagttgactcttcagtttagtgaggattatccactcaaaccaccaatggtgcgatttgtttctcaaatgtttcatccaaacatttctgcagatggaattatgtcttttaataatttactggatcggtggccttctataaatgacgtggaagatatactcaagtatatccagtccctaatatgtcatcccaacccgaagtgtcctgcaaattctgaagctttctacatgtacttcagtgagaacagactggagtacaaccgaagagtgaggatgatcgtggatcagagttggatggcagactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

246

Amino Acids

28.13

Weight (kDa)

5.0

Isoelectric Point (pI)

61.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62540
fragaria_vesca	FvH4_5g15330 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830 FvH4_6g02830
malus_domestica	MD06G1189200.v1.1 MD13G1077300.v1.1 MD14G1196200.v1.1 MD16G1077400.v1.1
prunus_persica	Prupe.1G269700_v2.0.a1 Prupe.1G269700_v2.0.a1 Prupe.5G187900_v2.0.a1 Prupe.5G188000_v2.0.a1 Prupe.5G188000_v2.0.a1
pyrus_communis	pycom06g16810 pycom14g16290 pycom16g06670
rosa_chinensis	RchiOBHm_Chr3g0450771 RchiOBHm_Chr3g0450881 RchiOBHm_Chr7g0180751
rosa_laevigata	RLG00000005235 RLG00000025697
rosa_multiflora	Rmu_co8464199.1_g000001 Rmu_sc0000078.1_g000010 Rmu_sc0000078.1_g000023
rosa_roxburghii	Rroxscaffold_3G00272590 Rroxscaffold_6G00428420 Rroxscaffold_6G00428500
rosa_rugosa	Rorug02G0630400 Rorug06G0435500
rosa_samantha	Rh3AG031600 Rh3AG032700 Rh3BG032200 Rh3BG032900 Rh3CG030900 Rh3CG031700 Rh3DG031800 Rh3DG032600 Rh7AG037200 Rh7BG036900 Rh7CG038600 Rh7DG037100
rosa_wichuraiana	Rw3G002420 Rw7G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	142, 337
Acc36I	ACCTGC	2 cut(s)	142, 337
AccB7I	CCANNNNNTGG	1 cut(s)	137
AccII	CGCG	1 cut(s)	143
AciI	CCGC	6 cut(s)	49, 65, 143, 181, 201, 207
AclWI	GGATC	3 cut(s)	344, 567, 726
AcsI	RAATTY	1 cut(s)	646
AcuI	CTGAAG	3 cut(s)	434, 655, 672
AfaI	GTAC	3 cut(s)	123, 668, 692
AfiI	CCNNNNNNNGG	8 cut(s)	70, 71, 137, 169, 259, 260, 332, 425
AflIII	ACRYGT	1 cut(s)	663
AgsI	TTSAA	3 cut(s)	15, 56, 307
AjiI	CACGTC	1 cut(s)	583
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	2 cut(s)	398, 656
AluI	AGCT	2 cut(s)	398, 656
Alw21I	GWGCWC	1 cut(s)	162
AlwI	GGATC	3 cut(s)	344, 567, 726
Ama87I	CYCGRG	1 cut(s)	259
AoxI	GGCC	1 cut(s)	566
ApeKI	GCWGC	3 cut(s)	46, 229, 313
ApoI	RAATTY	1 cut(s)	646
AspLEI	GCGC	3 cut(s)	143, 266, 434
AsuC2I	CCSGG	4 cut(s)	72, 260, 261, 353
AvaI	CYCGRG	1 cut(s)	259
BauI	CACGAG	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	3 cut(s)	33, 216, 300
BccI	CCATC	2 cut(s)	524, 724
BciT130I	CCWGG	1 cut(s)	165
BcnI	CCSGG	4 cut(s)	72, 260, 261, 353
BfaI	CTAG	1 cut(s)	739
BfmI	CTRYAG	3 cut(s)	230, 330, 525
BfuAI	ACCTGC	2 cut(s)	142, 337
BisI	GCNGC	4 cut(s)	47, 182, 230, 314
BlsI	GCNGC	4 cut(s)	48, 183, 231, 315
Bme1390I	CCNGG	5 cut(s)	72, 165, 260, 261, 353
BmeT110I	CYCGRG	1 cut(s)	259
BmgBI	CACGTC	1 cut(s)	583
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	5 cut(s)	72, 165, 260, 261, 353
BmsI	GCATC	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	707
BpuEI	CTTGAG	1 cut(s)	581
BpuMI	CCSGG	4 cut(s)	72, 260, 261, 353
BsaJI	CCNNGG	6 cut(s)	163, 258, 259, 351, 408, 419
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	8 cut(s)	70, 71, 137, 169, 259, 260, 332, 425
Bse1I	ACTGG	3 cut(s)	561, 607, 690
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	6 cut(s)	163, 258, 259, 351, 408, 419
BseGI	GGATG	5 cut(s)	220, 511, 622, 714, 735
BseLI	CCNNNNNNNGG	8 cut(s)	70, 71, 137, 169, 259, 260, 332, 425
BseNI	ACTGG	3 cut(s)	561, 607, 690
BseRI	GAGGAG	1 cut(s)	390
BseXI	GCAGC	3 cut(s)	33, 216, 300
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	1 cut(s)	568
BsiHKAI	GWGCWC	1 cut(s)	162
BsiHKCI	CYCGRG	1 cut(s)	259
BsiSI	CCGG	3 cut(s)	71, 260, 353
BslFI	GGGAC	1 cut(s)	595
BslI	CCNNNNNNNGG	8 cut(s)	70, 71, 137, 169, 259, 260, 332, 425
BsmFI	GGGAC	1 cut(s)	595
BsnI	GGCC	1 cut(s)	568
BsoBI	CYCGRG	1 cut(s)	259
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp1407I	TGTACA	1 cut(s)	121
Bsp143I	GATC	4 cut(s)	336, 559, 711, 718
BspACI	CCGC	6 cut(s)	49, 65, 143, 181, 201, 207
BspANI	GGCC	1 cut(s)	568
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	348
BspMAI	CTGCAG	3 cut(s)	234, 334, 529
BspMI	ACCTGC	2 cut(s)	142, 337
BspPI	GGATC	3 cut(s)	344, 567, 726
BsrGI	TGTACA	1 cut(s)	121
BsrI	ACTGG	3 cut(s)	561, 607, 690
BssECI	CCNNGG	6 cut(s)	163, 258, 259, 351, 408, 419
BssMI	GATC	4 cut(s)	336, 559, 711, 718
BssSI	CACGAG	1 cut(s)	276
BssT1I	CCWWGG	2 cut(s)	408, 419
Bst2BI	CACGAG	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	165
Bst6I	CTCTTC	3 cut(s)	302, 453, 694
BstAUI	TGTACA	1 cut(s)	121
BstC8I	GCNNGC	2 cut(s)	139, 205
BstF5I	GGATG	5 cut(s)	220, 511, 622, 714, 735
BstFNI	CGCG	1 cut(s)	143
BstHHI	GCGC	3 cut(s)	143, 266, 434
BstKTI	GATC	4 cut(s)	339, 562, 714, 721
BstMBI	GATC	4 cut(s)	336, 559, 711, 718
BstNI	CCWGG	1 cut(s)	165
BstNSI	RCATGY	1 cut(s)	667
BstSCI	CCNGG	5 cut(s)	70, 163, 258, 259, 351
BstSFI	CTRYAG	3 cut(s)	230, 330, 525
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	3 cut(s)	33, 216, 300
BstV2I	GAAGAC	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	568
BtrI	CACGTC	1 cut(s)	583
BtsCI	GGATG	5 cut(s)	220, 511, 622, 714, 735
BtsIMutI	CAGTG	2 cut(s)	346, 679
BveI	ACCTGC	2 cut(s)	142, 337
Cac8I	GCNNGC	2 cut(s)	139, 205
CfoI	GCGC	3 cut(s)	143, 266, 434
Cfr9I	CCCGGG	1 cut(s)	259
Csp6I	GTAC	3 cut(s)	122, 667, 691
CviAII	CATG	1 cut(s)	664
CviJI	RGCY	7 cut(s)	184, 229, 292, 313, 398, 568, 656
CviKI_1	RGCY	7 cut(s)	184, 229, 292, 313, 398, 568, 656
CviQI	GTAC	3 cut(s)	122, 667, 691
DpnI	GATC	4 cut(s)	338, 561, 713, 720
DpnII	GATC	4 cut(s)	336, 559, 711, 718
DraI	TTTAAA	1 cut(s)	298
Eam1104I	CTCTTC	3 cut(s)	302, 453, 694
EarI	CTCTTC	3 cut(s)	302, 453, 694
EciI	GGCGGA	1 cut(s)	222
Eco130I	CCWWGG	2 cut(s)	408, 419
Eco57I	CTGAAG	3 cut(s)	434, 655, 672
Eco88I	CYCGRG	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	163
EcoT14I	CCWWGG	2 cut(s)	408, 419
ErhI	CCWWGG	2 cut(s)	408, 419
FaeI	CATG	1 cut(s)	667
FaqI	GGGAC	1 cut(s)	595
FatI	CATG	1 cut(s)	663
FauI	CCCGC	1 cut(s)	72
Fnu4HI	GCNGC	4 cut(s)	47, 182, 230, 314
FokI	GGATG	4 cut(s)	227, 498, 609, 721
Fsp4HI	GCNGC	4 cut(s)	47, 182, 230, 314
FspBI	CTAG	1 cut(s)	739
GlaI	GCGC	3 cut(s)	142, 265, 433
GluI	GCNGC	4 cut(s)	47, 182, 230, 314
GsuI	CTGGAG	1 cut(s)	707
HaeIII	GGCC	1 cut(s)	568
HapII	CCGG	3 cut(s)	71, 260, 353
HhaI	GCGC	3 cut(s)	143, 266, 434
Hin1II	CATG	1 cut(s)	667
Hin6I	GCGC	3 cut(s)	141, 264, 432
HinP1I	GCGC	3 cut(s)	141, 264, 432
HincII	GTYRAC	2 cut(s)	6, 444
HindII	GTYRAC	2 cut(s)	6, 444
HindIII	AAGCTT	1 cut(s)	654
HinfI	GANTC	4 cut(s)	7, 22, 413, 445
HpaII	CCGG	3 cut(s)	71, 260, 353
Hpy166II	GTNNAC	2 cut(s)	6, 444
Hpy188I	TCNGA	3 cut(s)	247, 652, 723
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	2 cut(s)	6, 444
HpyAV	CCTTC	2 cut(s)	21, 579
HpyCH4IV	ACGT	1 cut(s)	582
HpyCH4V	TGCA	6 cut(s)	224, 232, 281, 332, 527, 644
HpySE526I	ACGT	1 cut(s)	582
Hsp92II	CATG	1 cut(s)	667
HspAI	GCGC	3 cut(s)	141, 264, 432
Kzo9I	GATC	4 cut(s)	336, 559, 711, 718
LmnI	GCTCC	2 cut(s)	165, 403
Lsp1109I	GCAGC	3 cut(s)	33, 216, 300
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	1 cut(s)	739
MaeII	ACGT	1 cut(s)	582
MalI	GATC	4 cut(s)	338, 561, 713, 720
MboI	GATC	4 cut(s)	336, 559, 711, 718
MboII	GAAGA	6 cut(s)	68, 71, 319, 440, 599, 711
MfeI	CAATTG	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	4 cut(s)	364, 534, 550, 646
MlyI	GAGTC	2 cut(s)	16, 439
MmeI	TCCRAC	3 cut(s)	18, 225, 707
MnlI	CCTC	9 cut(s)	24, 78, 205, 303, 411, 418, 422, 454, 699
MseI	TTAA	3 cut(s)	297, 438, 546
MspI	CCGG	3 cut(s)	71, 260, 353
MspR9I	CCNGG	5 cut(s)	72, 165, 260, 261, 353
MunI	CAATTG	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	165
MvnI	CGCG	1 cut(s)	143
NciI	CCSGG	4 cut(s)	72, 260, 261, 353
NdeII	GATC	4 cut(s)	336, 559, 711, 718
NlaIII	CATG	1 cut(s)	667
NlaIV	GGNNCC	1 cut(s)	348
NspI	RCATGY	1 cut(s)	667
PaqCI	CACCTGC	2 cut(s)	142, 337
PciI	ACATGT	1 cut(s)	663
PfeI	GAWTC	1 cut(s)	413
PflFI	GACNNNGTC	1 cut(s)	25
PflMI	CCANNNNNTGG	1 cut(s)	137
PkrI	GCNGC	4 cut(s)	48, 183, 231, 315
PleI	GAGTC	2 cut(s)	16, 439
PpsI	GAGTC	2 cut(s)	16, 439
PscI	ACATGT	1 cut(s)	663
Psp6I	CCWGG	1 cut(s)	163
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	348
PstI	CTGCAG	3 cut(s)	234, 334, 529
PsyI	GACNNNGTC	1 cut(s)	25
RsaI	GTAC	3 cut(s)	123, 668, 692
RsaNI	GTAC	3 cut(s)	122, 667, 691
SaqAI	TTAA	3 cut(s)	297, 438, 546
SatI	GCNGC	4 cut(s)	47, 182, 230, 314
Sau3AI	GATC	4 cut(s)	336, 559, 711, 718
SbfI	CCTGCAGG	1 cut(s)	334
SchI	GAGTC	2 cut(s)	16, 439
ScrFI	CCNGG	5 cut(s)	72, 165, 260, 261, 353
SdaI	CCTGCAGG	1 cut(s)	334
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	8 cut(s)	100, 136, 169, 287, 331, 400, 585, 658
SfaNI	GCATC	1 cut(s)	105
SfcI	CTRYAG	3 cut(s)	230, 330, 525
SmaI	CCCGGG	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
Sse8387I	CCTGCAGG	1 cut(s)	334
Sse9I	AATT	4 cut(s)	364, 534, 550, 646
SsiI	CCGC	6 cut(s)	49, 65, 143, 181, 201, 207
SspMI	CTAG	1 cut(s)	739
StyD4I	CCNGG	5 cut(s)	70, 163, 258, 259, 351
StyI	CCWWGG	2 cut(s)	408, 419
TaiI	ACGT	1 cut(s)	585
TaqI	TCGA	1 cut(s)	29
TasI	AATT	4 cut(s)	364, 534, 550, 646
TatI	WGTACW	3 cut(s)	121, 666, 690
TauI	GCSGC	1 cut(s)	184
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	3 cut(s)	297, 438, 546
Tru9I	TTAA	3 cut(s)	297, 438, 546
TscAI	CASTG	2 cut(s)	346, 679
TseI	GCWGC	3 cut(s)	46, 229, 313
TspDTI	ATGAA	1 cut(s)	500
TspMI	CCCGGG	1 cut(s)	259
TspRI	CASTG	2 cut(s)	346, 679
Tth111I	GACNNNGTC	1 cut(s)	25
Van91I	CCANNNNNTGG	1 cut(s)	137
XapI	RAATTY	1 cut(s)	646
XceI	RCATGY	1 cut(s)	667
XmaI	CCCGGG	1 cut(s)	259
XspI	CTAG	1 cut(s)	739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.