Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002957

Physical Location & Seq

Genomic Coordinates Forward (+)

25743344 .. 25748575

Gene Structure 5232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G64390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2574 bp

ATGGAGCGAAATAGCGTTAAATTTCATGCAGAGAAGAGATCCGGAGCGTTTGATCCAGGTTCAGGATTCGGATCTTCCAAGAGGGTCAAAACGCATCACACGCAGCTGCTCTCAGCTCTGGTTGTGCCGGTGGGACACGCGGCGTTTAGATTGCTCTGCCCTTTATCACACGTCGGTGCGGTGATTGGAAAATCTGGAAACGTAATCAAACAGCTCCAACAATCAACCGGAGCTAAGATACGGGTCGAGGAGCCTCCGTCTGGGTCTCCGGATCGGGTCATCACGATAATCGCACAAGCAGATTCGAAATCAAGGGTGAAATTGGGTGCTAATAACAATGGCAATGCAGAAGGAGAGAAAAAGGAGGAGGAAGTTGAGGTATCTAAAGCACAAGGAGCGTTGATTAAGGTATTCGAGCTTTTAGCGGCGGAAGCTGATAGTGATACGGTCGTGTGCCGATTGTTGACGGAGTCTAGCCATGCCGGTGCTGTGATAGGCAAAGGTGGTCAAATGGTTGGGAGTATTAGGAAAGAAACTGGCTGCAAAATTTCTATACGGATTGAGAATTTGCCGATTTGCGCTGATACTGATGACGAGATGGTGGAGGTTGAAGGAAATGCTATCGCTGTAAAGAAAGCTCTTGTGTCTATCTCCCGCTGCTTGCAAAATTGTCAATCGATTGACAAGGTAAGGATGGTTGGAAACAGACCTCTCGAAAAAGAGTTCCAAGCATCTTTGCATAGGCCTATAGAGACAATAATTCAGGAGTCACTTCCTAGGTCCGTTGAAGTTAACCCTTACGATTATAGGCTGAGAAACGACGAGATATTTCCCCGGGGCACTGTAGCTCGGGCTAATGATGTGATTCCTCATGATACTTTGCATCTTAGGCGTATCGAGGCGGTTCCCCAGGGTGCTTTACGCATGCATATTGAGGCAGACCGGCAAGATGTTTTACGCAGGCATGTTGAGGCGGACCGGCAAGATGCTTTACGCAGGCGTATTGATGTAGTTCCTCAAGAAACGTTATACATGCCTTCTGATGTTCTCAGGGGAGATTGTTTTCGACAGCATAGAGAGAGGGATGATTCTCATGATTCCTTGCATAGACCTTTCGAAATGGTTCCACGTGATGCTATGGGCATGCCTTTTGAGTCGTTTCCACGTGATGCTTACGGAAGGCCTATTGAAACAATGACACAAGAAACTCTTCGTGGGCAAAGTGCAGATTATCTTGCACATCGTTATTCGACTTTAGACACACATCCTCACAGCTTCACTACGTCTGCTTCAATGGCTAACACTGCCACCATGAAGCCACCTCCATCAGAAGTGGAAGTAGGGAACCAAGATGTGGTTTTTAAGATACTTTGTTCCACTGAGAATGCTGGCGGAGTTATCGGGACTGGAGGTAAAGTTGTCAGGATGCTTCATAGCGAAACAGGTGCCTTCATAAATGTGGGAAATACACTTGATGATTGTGAAGAACGTCTGATTGCAGTAACTGCATCAGAGAACCCTGAATGTCAAAGCTCGCCAGCCCAGAAAGCGATTATGCTTATTTTTTCAAGATTATTTGAGCTTGCCACTAACAAAATCCTAGATAATGGCCCAAGGTCATCTATCACTGCACGGCTTGTTGTCCCAACAAGTCAGATTGGTTGTGTGCTGGGAAAAGGAGGTGTTATTGTTTCGGAAATGCGGAAAACCACTGGGGCTGCAATTCAAATTTTGAAGGTTGAGCAGAACCCAAAATGTATTTCAGAGAATGATCAAGTTGTGCAGATTACAGGAGAGTTCCCTAATGTGAGAGAAGCCATTTTCCATATTACAAGCAGGCTGCGAGACAGTGTTTTCTCCAACTCAATGAAAAATTCCTTAGCCAAGAGCAGCTCCGCCTTAACTACTGAGAGATTCTACGACAGACAATCAGACAATCCTCTGTCTATTGGGTCTCATCAATCCGTTAGTAATCCAGCTACCAACTCCTCAAGTCTGCACAGAAGATCTGAGGATTCCTTTTTAAGTGGGTCTCATTCATCAGTTAACTATTCCAGATCAGTTGGCACAGATCCTTACATAAGACCAGAAGACCCATTTCCTGATAGGTTTAATCCCTCAGCAGGCTATTCTCATAATTTTGGTCGGCGGTTTACCATGGACCACAGTGATAACTCCCATCACTTAACTGAGGCCCCATCTCGTTTGTGGGCGTCCCCGCCTCCAGCAGCTCCAAGAGGCTTATCTGATGCCAGTGGCGGATTATCTTCTGCAAGGGCTGGCCATGTACTTGGCAGTGGACACAAATCTGCCATCGTTACAAACACTACCGTGGAAATTAGAGTTCCAGCTAATGCTATGAGCTTTGTGTATGGAGAGCAGGGTTACAATCTGGAACAACTGAGACAGATATCGGGTGCAAGGGTCATAATCCATGAACCTCCTCTAGGAACAAGTGACAGGATCATTGTCATATCTGGAACACCTGATCAAACCCAGGCTGCCCAAAACCTTCTTCATGCCTTCATCCTTACAGGTGAAACCTCATTGTCCAAAAAATACAACCTAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009909 GO:0009911 GO:0016604 GO:0016607 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0070013 GO:0090567 GO:0090700 GO:0099402 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

857

Amino Acids

93.69

Weight (kDa)

7.02

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	50 - 101	1.8e-14	KH domain
KH_1	PF00013	153 - 217	4.5e-12	KH domain
KH_1	PF00013	454 - 506	2.7e-06	KH domain
KH_1	PF00013	543 - 611	5.2e-14	KH domain
KH_1	PF00013	777 - 840	1.5e-13	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64390 AT5G64390 AT5G64390
fragaria_vesca	FvH4_2g11560 FvH4_2g11560 FvH4_2g11560
malus_domestica	MD05G1048400.v1.1 MD10G1054800.v1.1
prunus_persica	Prupe.8G070900_v2.0.a1
pyrus_communis	pycom05g04000 pycom10g04180
rosa_chinensis	RchiOBHm_Chr1g0353311 RchiOBHm_Chr4g0385021 RchiOBHm_Chr6g0270731 RchiOBHm_Chr6g0272811
rosa_laevigata	RLG00000013774
rosa_multiflora	Rmu_co8284529.1_g000001 Rmu_sc0000642.1_g000012 Rmu_sc0041041.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085770 Rroxscaffold_7G00197640
rosa_rugosa	Rorug06G0056000 Rorug06G0056100 Rorug06G0056200
rosa_samantha	Rh2DG204000 Rh4CG002400 Rh4CG168900 Rh6AG157400 Rh6AG175200 Rh6BG140200 Rh6BG178600 Rh6CG174800 Rh6DG123600 Rh6DG167400 Rh6DG180500 Rh7AG209600 Rh7CG359700
rosa_wichuraiana	Rw6G014930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1445
AccB7I	CCANNNNNTGG	1 cut(s)	1354
AccII	CGCG	1 cut(s)	140
AccIII	TCCGGA	2 cut(s)	41, 268
AclI	AACGTT	1 cut(s)	1025
AclWI	GGATC	6 cut(s)	33, 47, 79, 279, 2066, 2471
AcoI	YGGCCR	1 cut(s)	2281
AcsI	RAATTY	5 cut(s)	20, 546, 565, 1728, 1873
AcvI	CACGTG	2 cut(s)	1130, 1166
AcyI	GRCGYC	1 cut(s)	2213
AfaI	GTAC	1 cut(s)	2289
AfiI	CCNNNNNNNGG	5 cut(s)	62, 260, 1354, 2123, 2447
AflIII	ACRYGT	1 cut(s)	169
AgsI	TTSAA	7 cut(s)	611, 788, 1190, 1293, 1569, 1727, 1735
AjiI	CACGTC	1 cut(s)	172
AjnI	CCWGG	3 cut(s)	55, 909, 2496
AjuI	GAANNNNNNNTTGG	4 cut(s)	1744, 1776, 2499, 2531
AleI	CACNNNNGTG	2 cut(s)	174, 2330
Alw26I	GTCTC	6 cut(s)	270, 746, 1839, 1959, 2037, 2398
AlwI	GGATC	6 cut(s)	33, 47, 79, 279, 2066, 2471
AlwNI	CAGNNNCTG	1 cut(s)	1505
Ama87I	CYCGRG	2 cut(s)	834, 849
Aor13HI	TCCGGA	2 cut(s)	41, 268
AoxI	GGCC	5 cut(s)	743, 1181, 1609, 2193, 2281
ApeKI	GCWGC	9 cut(s)	103, 106, 540, 657, 1718, 1840, 1890, 2228, 2501
ApoI	RAATTY	5 cut(s)	20, 546, 565, 1728, 1873
Asp700I	GAANNNNTTC	2 cut(s)	1122, 1209
AspA2I	CCTAGG	1 cut(s)	776
AspLEI	GCGC	1 cut(s)	581
AspS9I	GGNCC	5 cut(s)	780, 976, 1610, 2161, 2194
AsuC2I	CCSGG	2 cut(s)	835, 836
AsuHPI	GGTGA	3 cut(s)	193, 328, 2549
AsuII	TTCGAA	2 cut(s)	305, 1116
AvaI	CYCGRG	2 cut(s)	834, 849
AvaII	GGWCC	3 cut(s)	780, 976, 2161
AvrII	CCTAGG	1 cut(s)	776
BaeGI	GKGCMC	1 cut(s)	842
BaeI	ACNNNNGTAYC	2 cut(s)	435, 468
BalI	TGGCCA	1 cut(s)	2283
BanI	GGYRCC	1 cut(s)	1445
BbrPI	CACGTG	2 cut(s)	1130, 1166
BbsI	GAAGAC	1 cut(s)	2097
BbvCI	CCTCAGC	1 cut(s)	2119
BbvI	GCAGC	9 cut(s)	93, 115, 527, 644, 1705, 1827, 1902, 2240, 2488
BccI	CCATC	6 cut(s)	592, 688, 1333, 2187, 2206, 2321
BceAI	ACGGC	1 cut(s)	1649
BcgI	CGANNNNNNTGC	2 cut(s)	1427, 1461
BciT130I	CCWGG	3 cut(s)	57, 911, 2498
BclI	TGATCA	2 cut(s)	1771, 2488
BcnI	CCSGG	2 cut(s)	835, 836
BcoDI	GTCTC	6 cut(s)	270, 746, 1839, 1959, 2037, 2398
BfaI	CTAG	5 cut(s)	474, 777, 1601, 2447, 2572
BfmI	CTRYAG	2 cut(s)	747, 843
BglII	AGATCT	1 cut(s)	2006
BlnI	CCTAGG	1 cut(s)	776
Bme1390I	CCNGG	5 cut(s)	57, 835, 836, 911, 2498
Bme18I	GGWCC	3 cut(s)	780, 976, 2161
BmeT110I	CYCGRG	2 cut(s)	834, 849
BmgBI	CACGTC	1 cut(s)	172
BmgT120I	GGNCC	5 cut(s)	780, 976, 1610, 2161, 2194
BmiI	GGNNCC	6 cut(s)	252, 906, 1125, 1346, 1447, 2196
BmrFI	CCNGG	5 cut(s)	57, 835, 836, 911, 2498
BmrI	ACTGGG	1 cut(s)	1722
BmsI	GCATC	9 cut(s)	103, 740, 892, 976, 1123, 1159, 1416, 1517, 2239
BmuI	ACTGGG	1 cut(s)	1722
BpiI	GAAGAC	1 cut(s)	2097
BpmI	CTGGAG	2 cut(s)	1428, 2208
Bpu10I	CCTNAGC	2 cut(s)	1879, 2119
Bpu14I	TTCGAA	2 cut(s)	305, 1116
BpuEI	CTTGAG	2 cut(s)	1002, 1975
BpuMI	CCSGG	2 cut(s)	835, 836
Bsa29I	ATCGAT	1 cut(s)	677
BsaAI	YACGTR	2 cut(s)	1130, 1166
BsaBI	GATNNNNATC	1 cut(s)	70
BsaHI	GRCGYC	1 cut(s)	2213
BsaI	GGTCTC	3 cut(s)	270, 1959, 2037
BsaWI	WCCGGW	3 cut(s)	41, 227, 268
BsaXI	ACNNNNNCTCC	4 cut(s)	242, 272, 1401, 1431
Bsc4I	CCNNNNNNNGG	5 cut(s)	62, 260, 1354, 2123, 2447
Bse118I	RCCGGY	4 cut(s)	127, 482, 942, 978
Bse1I	ACTGG	4 cut(s)	541, 1411, 1717, 2253
Bse3DI	GCAATG	1 cut(s)	349
Bse8I	GATNNNNATC	1 cut(s)	70
BseAI	TCCGGA	2 cut(s)	41, 268
BseBI	CCWGG	3 cut(s)	57, 911, 2498
BseCI	ATCGAT	1 cut(s)	677
BseGI	GGATG	5 cut(s)	699, 1090, 1264, 1431, 2526
BseJI	GATNNNNATC	1 cut(s)	70
BseLI	CCNNNNNNNGG	5 cut(s)	62, 260, 1354, 2123, 2447
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	9 cut(s)	126, 803, 1063, 1371, 1899, 2001, 2133, 2181, 2393
BseNI	ACTGG	4 cut(s)	541, 1411, 1717, 2253
BseRI	GAGGAG	4 cut(s)	263, 380, 1978, 2433
BseSI	GKGCMC	1 cut(s)	842
BseXI	GCAGC	9 cut(s)	93, 115, 527, 644, 1705, 1827, 1902, 2240, 2488
BseYI	CCCAGC	1 cut(s)	1669
BsgI	GTGCAG	4 cut(s)	1245, 1614, 1802, 1982
Bsh1236I	CGCG	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	450
BshFI	GGCC	5 cut(s)	745, 1183, 1611, 2195, 2283
BshNI	GGYRCC	1 cut(s)	1445
BshVI	ATCGAT	1 cut(s)	677
BsiEI	CGRYCG	1 cut(s)	450
BsiHKCI	CYCGRG	2 cut(s)	834, 849
BsiSI	CCGG	8 cut(s)	42, 128, 228, 269, 483, 835, 943, 979
BslFI	GGGAC	4 cut(s)	147, 1417, 1628, 2200
BslI	CCNNNNNNNGG	5 cut(s)	62, 260, 1354, 2123, 2447
BsmAI	GTCTC	6 cut(s)	270, 746, 1839, 1959, 2037, 2398
BsmFI	GGGAC	4 cut(s)	147, 1417, 1628, 2200
BsmI	GAATGC	1 cut(s)	1390
BsnI	GGCC	5 cut(s)	745, 1183, 1611, 2195, 2283
Bso31I	GGTCTC	3 cut(s)	270, 1959, 2037
BsoBI	CYCGRG	2 cut(s)	834, 849
Bsp119I	TTCGAA	2 cut(s)	305, 1116
Bsp1286I	GDGCHC	1 cut(s)	842
Bsp13I	TCCGGA	2 cut(s)	41, 268
Bsp19I	CCATGG	1 cut(s)	2157
BspANI	GGCC	5 cut(s)	745, 1183, 1611, 2195, 2283
BspCNI	CTCAG	9 cut(s)	125, 804, 1062, 1372, 1900, 2002, 2132, 2182, 2394
BspDI	ATCGAT	1 cut(s)	677
BspEI	TCCGGA	2 cut(s)	41, 268
BspFNI	CGCG	1 cut(s)	140
BspHI	TCATGA	2 cut(s)	871, 1093
BspLI	GGNNCC	6 cut(s)	252, 906, 1125, 1346, 1447, 2196
BspPI	GGATC	6 cut(s)	33, 47, 79, 279, 2066, 2471
BspT104I	TTCGAA	2 cut(s)	305, 1116
BspT107I	GGYRCC	1 cut(s)	1445
BspTNI	GGTCTC	3 cut(s)	270, 1959, 2037
BsrDI	GCAATG	1 cut(s)	349
BsrFI	RCCGGY	4 cut(s)	127, 482, 942, 978
BsrI	ACTGG	4 cut(s)	541, 1411, 1717, 2253
BssAI	RCCGGY	4 cut(s)	127, 482, 942, 978
BssNI	GRCGYC	1 cut(s)	2213
BssT1I	CCWWGG	3 cut(s)	776, 1613, 2157
Bst2UI	CCWGG	3 cut(s)	57, 911, 2498
Bst4CI	ACNGT	5 cut(s)	448, 844, 1850, 2168, 2332
Bst6I	CTCTTC	2 cut(s)	29, 1215
BstACI	GRCGYC	1 cut(s)	2213
BstAPI	GCANNNNNTGC	1 cut(s)	1505
BstBAI	YACGTR	2 cut(s)	1130, 1166
BstBI	TTCGAA	2 cut(s)	305, 1116
BstDSI	CCRYGG	2 cut(s)	2157, 2331
BstENI	CCTNNNNNAGG	1 cut(s)	2445
BstF5I	GGATG	5 cut(s)	699, 1090, 1264, 1431, 2526
BstFNI	CGCG	1 cut(s)	140
BstHHI	GCGC	1 cut(s)	581
BstMAI	GTCTC	6 cut(s)	270, 746, 1839, 1959, 2037, 2398
BstMCI	CGRYCG	1 cut(s)	450
BstMWI	GCNNNNNNNGC	8 cut(s)	100, 395, 431, 889, 1295, 1304, 1505, 1547
BstNI	CCWGG	3 cut(s)	57, 911, 2498
BstNSI	RCATGY	4 cut(s)	928, 968, 1036, 1147
BstSCI	CCNGG	5 cut(s)	55, 833, 834, 909, 2496
BstSFI	CTRYAG	2 cut(s)	747, 843
BstSLI	GKGCMC	1 cut(s)	842
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	9 cut(s)	93, 115, 527, 644, 1705, 1827, 1902, 2240, 2488
BstV2I	GAAGAC	1 cut(s)	2097
BstX2I	RGATCY	4 cut(s)	38, 71, 2006, 2071
BstXI	CCANNNNNNTGG	1 cut(s)	2291
BstYI	RGATCY	4 cut(s)	38, 71, 2006, 2071
Bsu15I	ATCGAT	1 cut(s)	677
BsuRI	GGCC	5 cut(s)	745, 1183, 1611, 2195, 2283
BsuTUI	ATCGAT	1 cut(s)	677
BtgI	CCRYGG	2 cut(s)	2157, 2331
BtrI	CACGTC	1 cut(s)	172
BtsCI	GGATG	5 cut(s)	699, 1090, 1264, 1431, 2526
BtsI	GCAGTG	3 cut(s)	1302, 1626, 2302
BtsIMutI	CAGTG	9 cut(s)	840, 1302, 1377, 1626, 1710, 1855, 2173, 2260, 2302
CaiI	CAGNNNCTG	1 cut(s)	1505
CciI	TCATGA	2 cut(s)	871, 1093
CfoI	GCGC	1 cut(s)	581
Cfr10I	RCCGGY	4 cut(s)	127, 482, 942, 978
Cfr13I	GGNCC	5 cut(s)	780, 976, 1610, 2161, 2194
Cfr9I	CCCGGG	1 cut(s)	834
ClaI	ATCGAT	1 cut(s)	677
CpoI	CGGWCCG	1 cut(s)	976
CseI	GACGC	1 cut(s)	2202
Csp6I	GTAC	1 cut(s)	2288
CspI	CGGWCCG	1 cut(s)	976
CviQI	GTAC	1 cut(s)	2288
EaeI	YGGCCR	1 cut(s)	2281
Eam1104I	CTCTTC	2 cut(s)	29, 1215
EarI	CTCTTC	2 cut(s)	29, 1215
EciI	GGCGGA	5 cut(s)	443, 989, 1407, 1885, 2274
Eco130I	CCWWGG	3 cut(s)	776, 1613, 2157
Eco147I	AGGCCT	2 cut(s)	745, 1183
Eco31I	GGTCTC	3 cut(s)	270, 1959, 2037
Eco32I	GATATC	1 cut(s)	2412
Eco47I	GGWCC	3 cut(s)	780, 976, 2161
Eco72I	CACGTG	2 cut(s)	1130, 1166
Eco88I	CYCGRG	2 cut(s)	834, 849
EcoNI	CCTNNNNNAGG	1 cut(s)	2445
EcoO109I	RGGNCCY	1 cut(s)	2194
EcoRII	CCWGG	3 cut(s)	55, 909, 2496
EcoRV	GATATC	1 cut(s)	2412
EcoT14I	CCWWGG	3 cut(s)	776, 1613, 2157
EcoT22I	ATGCAT	1 cut(s)	930
ErhI	CCWWGG	3 cut(s)	776, 1613, 2157
FalI	AAGNNNNNCTT	2 cut(s)	1194, 1226
FaqI	GGGAC	4 cut(s)	147, 1417, 1628, 2200
FauI	CCCGC	2 cut(s)	662, 2226
FbaI	TGATCA	2 cut(s)	1771, 2488
FokI	GGATG	5 cut(s)	706, 1097, 1251, 1438, 2513
FspBI	CTAG	5 cut(s)	474, 777, 1601, 2447, 2572
GlaI	GCGC	1 cut(s)	580
GsaI	CCCAGC	1 cut(s)	1673
GsuI	CTGGAG	2 cut(s)	1428, 2208
HaeIII	GGCC	5 cut(s)	745, 1183, 1611, 2195, 2283
HapII	CCGG	8 cut(s)	42, 128, 228, 269, 483, 835, 943, 979
HgaI	GACGC	1 cut(s)	2202
HhaI	GCGC	1 cut(s)	581
Hin1I	GRCGYC	1 cut(s)	2213
Hin6I	GCGC	1 cut(s)	579
HinP1I	GCGC	1 cut(s)	579
HincII	GTYRAC	3 cut(s)	465, 793, 2047
HindII	GTYRAC	3 cut(s)	465, 793, 2047
HpaI	GTTAAC	2 cut(s)	793, 2047
HpaII	CCGG	8 cut(s)	42, 128, 228, 269, 483, 835, 943, 979
HphI	GGTGA	3 cut(s)	193, 328, 2549
Hpy166II	GTNNAC	5 cut(s)	465, 793, 2047, 2154, 2300
Hpy8I	GTNNAC	5 cut(s)	465, 793, 2047, 2154, 2300
Hpy99I	CGWCG	2 cut(s)	176, 824
HpyAV	CCTTC	8 cut(s)	344, 605, 1047, 1173, 1459, 1729, 2522, 2533
HpyCH4III	ACNGT	5 cut(s)	448, 844, 1850, 2168, 2332
HpyCH4IV	ACGT	7 cut(s)	171, 201, 1025, 1129, 1165, 1283, 1489
HpyF10VI	GCNNNNNNNGC	8 cut(s)	100, 395, 431, 889, 1295, 1304, 1505, 1547
HpySE526I	ACGT	7 cut(s)	171, 201, 1025, 1129, 1165, 1283, 1489
Hsp92I	GRCGYC	1 cut(s)	2213
HspAI	GCGC	1 cut(s)	579
Kpn2I	TCCGGA	2 cut(s)	41, 268
Ksp22I	TGATCA	2 cut(s)	1771, 2488
KspAI	GTTAAC	2 cut(s)	793, 2047
LmnI	GCTCC	8 cut(s)	4, 44, 219, 230, 250, 395, 1898, 2236
Lsp1109I	GCAGC	9 cut(s)	93, 115, 527, 644, 1705, 1827, 1902, 2240, 2488
LweI	GCATC	9 cut(s)	103, 740, 892, 976, 1123, 1159, 1416, 1517, 2239
MaeI	CTAG	5 cut(s)	474, 777, 1601, 2447, 2572
MaeII	ACGT	7 cut(s)	171, 201, 1025, 1129, 1165, 1283, 1489
MaeIII	GTNAC	5 cut(s)	768, 1501, 2317, 2384, 2456
MboII	GAAGA	8 cut(s)	46, 66, 1202, 1496, 2016, 2102, 2259, 2507
MflI	RGATCY	4 cut(s)	38, 71, 2006, 2071
MhlI	GDGCHC	1 cut(s)	842
MlsI	TGGCCA	1 cut(s)	2283
MluNI	TGGCCA	1 cut(s)	2283
MlyI	GAGTC	3 cut(s)	479, 776, 1163
MmeI	TCCRAC	3 cut(s)	241, 679, 1884
Mox20I	TGGCCA	1 cut(s)	2283
Mph1103I	ATGCAT	1 cut(s)	930
MroI	TCCGGA	2 cut(s)	41, 268
MroXI	GAANNNNTTC	2 cut(s)	1122, 1209
MscI	TGGCCA	1 cut(s)	2283
MseI	TTAA	9 cut(s)	18, 405, 792, 1362, 1901, 2024, 2046, 2112, 2186
MslI	CAYNNNNRTG	4 cut(s)	174, 483, 1457, 2330
Msp20I	TGGCCA	1 cut(s)	2283
MspA1I	CMGCKG	2 cut(s)	106, 657
MspI	CCGG	8 cut(s)	42, 128, 228, 269, 483, 835, 943, 979
MspR9I	CCNGG	5 cut(s)	57, 835, 836, 911, 2498
Mva1269I	GAATGC	1 cut(s)	1390
MvaI	CCWGG	3 cut(s)	57, 911, 2498
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	8 cut(s)	100, 395, 431, 889, 1295, 1304, 1505, 1547
NciI	CCSGG	2 cut(s)	835, 836
NcoI	CCATGG	1 cut(s)	2157
NlaIV	GGNNCC	6 cut(s)	252, 906, 1125, 1346, 1447, 2196
NmuCI	GTSAC	2 cut(s)	768, 2456
NsiI	ATGCAT	1 cut(s)	930
NspI	RCATGY	4 cut(s)	928, 968, 1036, 1147
NspV	TTCGAA	2 cut(s)	305, 1116
OliI	CACNNNNGTG	2 cut(s)	174, 2330
PaeI	GCATGC	2 cut(s)	928, 1147
PagI	TCATGA	2 cut(s)	871, 1093
PasI	CCCWGGG	1 cut(s)	910
PceI	AGGCCT	2 cut(s)	745, 1183
PctI	GAATGC	1 cut(s)	1390
PdmI	GAANNNNTTC	2 cut(s)	1122, 1209
PfeI	GAWTC	7 cut(s)	66, 302, 865, 1088, 1097, 1914, 2015
PflFI	GACNNNGTC	1 cut(s)	469
PflMI	CCANNNNNTGG	1 cut(s)	1354
PleI	GAGTC	3 cut(s)	478, 775, 1162
PmaCI	CACGTG	2 cut(s)	1130, 1166
PmlI	CACGTG	2 cut(s)	1130, 1166
PpsI	GAGTC	3 cut(s)	478, 775, 1162
Ppu21I	YACGTR	2 cut(s)	1130, 1166
Psp1406I	AACGTT	1 cut(s)	1025
Psp6I	CCWGG	3 cut(s)	55, 909, 2496
PspCI	CACGTG	2 cut(s)	1130, 1166
PspFI	CCCAGC	1 cut(s)	1669
PspGI	CCWGG	3 cut(s)	55, 909, 2496
PspN4I	GGNNCC	6 cut(s)	252, 906, 1125, 1346, 1447, 2196
PspPI	GGNCC	5 cut(s)	780, 976, 1610, 2161, 2194
PstNI	CAGNNNCTG	1 cut(s)	1505
PsuI	RGATCY	4 cut(s)	38, 71, 2006, 2071
PsyI	GACNNNGTC	1 cut(s)	469
PvuII	CAGCTG	1 cut(s)	106
RsaI	GTAC	1 cut(s)	2289
RsaNI	GTAC	1 cut(s)	2288
RseI	CAYNNNNRTG	4 cut(s)	174, 483, 1457, 2330
Rsr2I	CGGWCCG	1 cut(s)	976
RsrII	CGGWCCG	1 cut(s)	976
SaqAI	TTAA	9 cut(s)	18, 405, 792, 1362, 1901, 2024, 2046, 2112, 2186
Sau96I	GGNCC	5 cut(s)	780, 976, 1610, 2161, 2194
SchI	GAGTC	3 cut(s)	479, 776, 1163
ScrFI	CCNGG	5 cut(s)	57, 835, 836, 911, 2498
SduI	GDGCHC	1 cut(s)	842
SfaNI	GCATC	9 cut(s)	103, 740, 892, 976, 1123, 1159, 1416, 1517, 2239
SfcI	CTRYAG	2 cut(s)	747, 843
SfuI	TTCGAA	2 cut(s)	305, 1116
SinI	GGWCC	3 cut(s)	780, 976, 2161
SmaI	CCCGGG	1 cut(s)	836
SmiMI	CAYNNNNRTG	4 cut(s)	174, 483, 1457, 2330
SmlI	CTYRAG	2 cut(s)	1017, 1990
SmoI	CTYRAG	2 cut(s)	1017, 1990
SphI	GCATGC	2 cut(s)	928, 1147
SseBI	AGGCCT	2 cut(s)	745, 1183
SspMI	CTAG	5 cut(s)	474, 777, 1601, 2447, 2572
StuI	AGGCCT	2 cut(s)	745, 1183
StyD4I	CCNGG	5 cut(s)	55, 833, 834, 909, 2496
StyI	CCWWGG	3 cut(s)	776, 1613, 2157
TaaI	ACNGT	5 cut(s)	448, 844, 1850, 2168, 2332
TaiI	ACGT	7 cut(s)	174, 204, 1028, 1132, 1168, 1286, 1492
TaqI	TCGA	9 cut(s)	246, 305, 414, 677, 714, 897, 1066, 1116, 1250
TatI	WGTACW	1 cut(s)	2287
TauI	GCSGC	2 cut(s)	143, 428
TfiI	GAWTC	7 cut(s)	66, 302, 865, 1088, 1097, 1914, 2015
Tru1I	TTAA	9 cut(s)	18, 405, 792, 1362, 1901, 2024, 2046, 2112, 2186
Tru9I	TTAA	9 cut(s)	18, 405, 792, 1362, 1901, 2024, 2046, 2112, 2186
TscAI	CASTG	9 cut(s)	847, 1309, 1384, 1633, 1717, 1855, 2173, 2260, 2302
TseFI	GTSAC	2 cut(s)	768, 2456
TseI	GCWGC	9 cut(s)	103, 106, 540, 657, 1718, 1840, 1890, 2228, 2501
Tsp45I	GTSAC	2 cut(s)	768, 2456
TspDTI	ATGAA	9 cut(s)	14, 1328, 1421, 1441, 1883, 2028, 2451, 2507, 2515
TspGWI	ACGGA	6 cut(s)	246, 482, 571, 772, 1191, 1954
TspMI	CCCGGG	1 cut(s)	834
TspRI	CASTG	9 cut(s)	847, 1309, 1384, 1633, 1717, 1855, 2173, 2260, 2302
Tth111I	GACNNNGTC	1 cut(s)	469
Van91I	CCANNNNNTGG	1 cut(s)	1354
VpaK11BI	GGWCC	3 cut(s)	780, 976, 2161
XagI	CCTNNNNNAGG	1 cut(s)	2445
XapI	RAATTY	5 cut(s)	20, 546, 565, 1728, 1873
XceI	RCATGY	4 cut(s)	928, 968, 1036, 1147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2205
XmaI	CCCGGG	1 cut(s)	834
XmaJI	CCTAGG	1 cut(s)	776
XmnI	GAANNNNTTC	2 cut(s)	1122, 1209
XspI	CTAG	5 cut(s)	474, 777, 1601, 2447, 2572
Zsp2I	ATGCAT	1 cut(s)	930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.