RchiOBHm_Chr1g0353311

KH domain-containing protein At4g18375-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
46574296 .. 46575752
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57895

Sequence Viewer

Length: 1071 bp
ATGATGTGGCAGATAGAAGGGGATATTTTGGCTGTAAAGAAAGCACTTGTTGCTGTCTCCGGCCATCTTCAAGATTGTCCACCAGTTGACAAGACAAGGATGACTAGAAGTAGGCCTATTGAGACAGTTCCTCGTGAAACTTTACCTGATATTCGTGTAGATCACCTTTCACAGAGGAACTCAGTGATTTCCAATTTGCCGAGTAGCTCCATGAGTTATGCTTCAGGAGTTTGTCTGCCATCAATAGAGGCTGAAAGGATCTCAACACTGGATACAAGAACACTCCAGCAGGAAGTTACTTTTAAGATTCTTTGCGCCAATGATAGGGTTGGGGGTGTCATTGGAAAAGGGGGTGCCATTGTCAAGGCTCTTCAGAATGAGACTGGTGCTACTATAAGTGTTGGAGGATCTGTGGCCGAGTGTGATGAAAGATTAATTACTAATCCTGAGTCCCGCTACTCTCCAGCACAAAAAGGTCTTGTTCTTGTCTTCTCAAGGTCTGTAGAGGCAGGCATTGAAAAGAGGCAAGACTCGAGCTCCAAAGGGTCACCTCTTATTGCACGCCTTGTTGTCCCGACAAGCCAAATTCGGAAGGTAACTGGTACCGGTATACGGATAATAGGTGGTGTCCAGGTCCCGAAGTGTGCCGTAGAGAATGACGAAGTTGTACAGGTGTCAAGAAATTTTTCAAGTGTGCAAGATGCTTTGTACAATATTACTGGTAGGTTACGAGATAACCTTTTCTCCAACACAGTAAATAATTCTGGAAGGAGGAATAGTTCAGCCGTGCTAACAGATACCAATCCTTATGGAAGACTCAGGGATCCTGGTCCCACTGGATTTCAGCCTTCTTCATCAGTTGGTGTTACTCATGGTCTCGGTCGACATACTACTCTAACTCAAAGTATGGATCATCTTGGACTTTCCCATAATTTAGATCATCCTTCTTCACCAAGGCCATGGGCATCACAGATGGTTGCTCCAAGGGGAATCTCAGATACTAGCAGGGGTTTGACTTCTCTTAAAAGTGGCTCGGATCTTGGTAGGTTAGTAATGTCGCACAATGCATAG

Protein Analysis

356

Amino Acids

38.2

Weight (kDa)

9.42

Isoelectric Point (pI)

50.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 100 - 147 6.1e-10 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 602
AccB1I GGYRCC 2 cut(s) 353, 602
AccI GTMKAC 2 cut(s) 610, 883
AciI CCGC 1 cut(s) 454
AclWI GGATC 6 cut(s) 266, 415, 818, 831, 918, 1044
AcoI YGGCCR 2 cut(s) 61, 414
AcsI RAATTY 2 cut(s) 585, 682
AcuI CTGAAG 2 cut(s) 207, 356
AfaI GTAC 3 cut(s) 604, 669, 710
AfiI CCNNNNNNNGG 2 cut(s) 324, 612
AgeI ACCGGT 1 cut(s) 605
AgsI TTSAA 3 cut(s) 71, 518, 690
AjnI CCWGG 2 cut(s) 630, 826
AloI GAACNNNNNNTCC 2 cut(s) 763, 795
AluBI AGCT 2 cut(s) 207, 537
AluI AGCT 2 cut(s) 207, 537
Alw21I GWGCWC 1 cut(s) 539
Alw26I GTCTC 4 cut(s) 61, 116, 374, 881
AlwI GGATC 6 cut(s) 266, 415, 818, 831, 918, 1044
Ama87I CYCGRG 1 cut(s) 532
AoxI GGCC 4 cut(s) 61, 113, 414, 956
ApoI RAATTY 2 cut(s) 585, 682
AseI ATTAAT 1 cut(s) 434
AsiGI ACCGGT 1 cut(s) 605
Asp700I GAANNNNTTC 1 cut(s) 685
Asp718I GGTACC 1 cut(s) 602
AspLEI GCGC 1 cut(s) 317
AspS9I GGNCC 2 cut(s) 634, 830
AsuHPI GGTGA 3 cut(s) 155, 540, 942
AvaI CYCGRG 1 cut(s) 532
AvaII GGWCC 2 cut(s) 634, 830
BamHI GGATCC 1 cut(s) 823
BanI GGYRCC 2 cut(s) 353, 602
BanII GRGCYC 1 cut(s) 539
BauI CACGAG 1 cut(s) 132
BbsI GAAGAC 2 cut(s) 481, 820
Bbv12I GWGCWC 1 cut(s) 539
BccI CCATC 3 cut(s) 72, 247, 967
BceAI ACGGC 2 cut(s) 632, 770
BciT130I CCWGG 2 cut(s) 632, 828
BciVI GTATCC 1 cut(s) 265
BcoDI GTCTC 4 cut(s) 61, 116, 374, 881
BfaI CTAG 2 cut(s) 105, 1002
BfmI CTRYAG 1 cut(s) 501
BfuI GTATCC 1 cut(s) 265
Bme1390I CCNGG 2 cut(s) 632, 828
Bme18I GGWCC 2 cut(s) 634, 830
BmeT110I CYCGRG 1 cut(s) 532
BmgT120I GGNCC 2 cut(s) 634, 830
BmiI GGNNCC 5 cut(s) 355, 604, 636, 825, 832
BmrFI CCNGG 2 cut(s) 632, 828
BmsI GCATC 2 cut(s) 691, 974
BpiI GAAGAC 2 cut(s) 481, 820
BpmI CTGGAG 2 cut(s) 269, 447
BpuEI CTTGAG 1 cut(s) 478
BsaBI GATNNNNATC 1 cut(s) 801
BsaI GGTCTC 1 cut(s) 881
BsaJI CCNNGG 3 cut(s) 953, 959, 983
BsaWI WCCGGW 1 cut(s) 605
BsaXI ACNNNNNCTCC 8 cut(s) 396, 426, 521, 551, 728, 758, 763, 793
Bsc4I CCNNNNNNNGG 2 cut(s) 324, 612
Bse118I RCCGGY 1 cut(s) 605
Bse1I ACTGG 6 cut(s) 83, 273, 388, 604, 724, 841
Bse8I GATNNNNATC 1 cut(s) 801
BseBI CCWGG 2 cut(s) 632, 828
BseDI CCNNGG 3 cut(s) 953, 959, 983
BseGI GGATG 2 cut(s) 105, 940
BseJI GATNNNNATC 1 cut(s) 801
BseLI CCNNNNNNNGG 2 cut(s) 324, 612
BseMII CTCAG 4 cut(s) 195, 438, 832, 1008
BseNI ACTGG 6 cut(s) 83, 273, 388, 604, 724, 841
Bsh1285I CGRYCG 1 cut(s) 883
BshFI GGCC 4 cut(s) 63, 115, 416, 958
BshNI GGYRCC 2 cut(s) 353, 602
BshTI ACCGGT 1 cut(s) 605
BsiEI CGRYCG 1 cut(s) 883
BsiHKAI GWGCWC 1 cut(s) 539
BsiHKCI CYCGRG 1 cut(s) 532
BsiSI CCGG 2 cut(s) 60, 606
BslFI GGGAC 4 cut(s) 436, 557, 620, 816
BslI CCNNNNNNNGG 2 cut(s) 324, 612
BsmAI GTCTC 4 cut(s) 61, 116, 374, 881
BsmFI GGGAC 4 cut(s) 436, 557, 620, 816
BsnI GGCC 4 cut(s) 63, 115, 416, 958
Bso31I GGTCTC 1 cut(s) 881
BsoBI CYCGRG 1 cut(s) 532
Bsp1286I GDGCHC 1 cut(s) 539
Bsp1407I TGTACA 2 cut(s) 667, 708
Bsp143I GATC 7 cut(s) 160, 258, 407, 823, 910, 937, 1036
Bsp19I CCATGG 1 cut(s) 959
BspACI CCGC 1 cut(s) 454
BspANI GGCC 4 cut(s) 63, 115, 416, 958
BspCNI CTCAG 4 cut(s) 194, 439, 831, 1007
BspLI GGNNCC 5 cut(s) 355, 604, 636, 825, 832
BspPI GGATC 6 cut(s) 266, 415, 818, 831, 918, 1044
BspQI GCTCTTC 1 cut(s) 375
BspT107I GGYRCC 2 cut(s) 353, 602
BspTNI GGTCTC 1 cut(s) 881
BsrFI RCCGGY 1 cut(s) 605
BsrGI TGTACA 2 cut(s) 667, 708
BsrI ACTGG 6 cut(s) 83, 273, 388, 604, 724, 841
BssAI RCCGGY 1 cut(s) 605
BssECI CCNNGG 3 cut(s) 953, 959, 983
BssMI GATC 7 cut(s) 160, 258, 407, 823, 910, 937, 1036
BssNAI GTATAC 1 cut(s) 611
BssSI CACGAG 1 cut(s) 132
BssT1I CCWWGG 3 cut(s) 953, 959, 983
Bst1107I GTATAC 1 cut(s) 611
Bst2BI CACGAG 1 cut(s) 132
Bst2UI CCWGG 2 cut(s) 632, 828
Bst4CI ACNGT 2 cut(s) 127, 754
Bst6I CTCTTC 1 cut(s) 375
BstAPI GCANNNNNTGC 1 cut(s) 50
BstAUI TGTACA 2 cut(s) 667, 708
BstC8I GCNNGC 2 cut(s) 511, 562
BstDEI CTNAG 4 cut(s) 181, 447, 818, 994
BstDSI CCRYGG 1 cut(s) 959
BstEII GGTNACC 1 cut(s) 546
BstF5I GGATG 2 cut(s) 105, 940
BstHHI GCGC 1 cut(s) 317
BstKTI GATC 7 cut(s) 163, 261, 410, 826, 913, 940, 1039
BstMAI GTCTC 4 cut(s) 61, 116, 374, 881
BstMBI GATC 7 cut(s) 160, 258, 407, 823, 910, 937, 1036
BstMCI CGRYCG 1 cut(s) 883
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 2 cut(s) 632, 828
BstPI GGTNACC 1 cut(s) 546
BstSCI CCNGG 2 cut(s) 630, 826
BstSFI CTRYAG 1 cut(s) 501
BstV2I GAAGAC 2 cut(s) 481, 820
BstX2I RGATCY 4 cut(s) 258, 407, 823, 1036
BstXI CCANNNNNNTGG 1 cut(s) 960
BstYI RGATCY 4 cut(s) 258, 407, 823, 1036
BstZ17I GTATAC 1 cut(s) 611
BsuI GTATCC 1 cut(s) 265
BsuRI GGCC 4 cut(s) 63, 115, 416, 958
BtgI CCRYGG 1 cut(s) 959
BtsCI GGATG 2 cut(s) 105, 940
BtsIMutI CAGTG 3 cut(s) 189, 266, 834
Cac8I GCNNGC 2 cut(s) 511, 562
CfoI GCGC 1 cut(s) 317
Cfr10I RCCGGY 1 cut(s) 605
Cfr13I GGNCC 2 cut(s) 634, 830
Csp6I GTAC 3 cut(s) 603, 668, 709
CspAI ACCGGT 1 cut(s) 605
CviAII CATG 3 cut(s) 211, 872, 960
CviQI GTAC 3 cut(s) 603, 668, 709
DdeI CTNAG 4 cut(s) 181, 447, 818, 994
DpnI GATC 7 cut(s) 162, 260, 409, 825, 912, 939, 1038
DpnII GATC 7 cut(s) 160, 258, 407, 823, 910, 937, 1036
EaeI YGGCCR 2 cut(s) 61, 414
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Ecl136II GAGCTC 1 cut(s) 537
Eco130I CCWWGG 3 cut(s) 953, 959, 983
Eco147I AGGCCT 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 539
Eco31I GGTCTC 1 cut(s) 881
Eco47I GGWCC 2 cut(s) 634, 830
Eco53kI GAGCTC 1 cut(s) 537
Eco57I CTGAAG 2 cut(s) 207, 356
Eco88I CYCGRG 1 cut(s) 532
Eco91I GGTNACC 1 cut(s) 546
EcoICRI GAGCTC 1 cut(s) 537
EcoO109I RGGNCCY 1 cut(s) 634
EcoO65I GGTNACC 1 cut(s) 546
EcoRII CCWGG 2 cut(s) 630, 826
EcoT14I CCWWGG 3 cut(s) 953, 959, 983
EcoT22I ATGCAT 1 cut(s) 1069
EcoT38I GRGCYC 1 cut(s) 539
ErhI CCWWGG 3 cut(s) 953, 959, 983
FaeI CATG 3 cut(s) 214, 875, 963
FaqI GGGAC 4 cut(s) 436, 557, 620, 816
FatI CATG 3 cut(s) 210, 871, 959
FauI CCCGC 1 cut(s) 461
FblI GTMKAC 2 cut(s) 610, 883
FokI GGATG 2 cut(s) 112, 927
FriOI GRGCYC 1 cut(s) 539
FspBI CTAG 2 cut(s) 105, 1002
GlaI GCGC 1 cut(s) 316
GsuI CTGGAG 2 cut(s) 269, 447
HaeIII GGCC 4 cut(s) 63, 115, 416, 958
HapII CCGG 2 cut(s) 60, 606
HhaI GCGC 1 cut(s) 317
Hin1II CATG 3 cut(s) 214, 875, 963
Hin6I GCGC 1 cut(s) 315
HinP1I GCGC 1 cut(s) 315
HincII GTYRAC 2 cut(s) 88, 884
HindII GTYRAC 2 cut(s) 88, 884
HinfI GANTC 5 cut(s) 307, 449, 530, 816, 990
HpaII CCGG 2 cut(s) 60, 606
HphI GGTGA 3 cut(s) 155, 540, 942
Hpy166II GTNNAC 4 cut(s) 80, 88, 611, 884
Hpy188I TCNGA 4 cut(s) 375, 591, 997, 1036
Hpy188III TCNNGA 8 cut(s) 71, 134, 225, 446, 574, 637, 678, 765
Hpy8I GTNNAC 4 cut(s) 80, 88, 611, 884
HpyAV CCTTC 5 cut(s) 11, 586, 762, 858, 954
HpyCH4III ACNGT 2 cut(s) 127, 754
HpyCH4V TGCA 3 cut(s) 560, 697, 1067
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 4 cut(s) 181, 447, 818, 994
Hsp92II CATG 3 cut(s) 214, 875, 963
HspAI GCGC 1 cut(s) 315
KpnI GGTACC 1 cut(s) 606
Kzo9I GATC 7 cut(s) 160, 258, 407, 823, 910, 937, 1036
LguI GCTCTTC 1 cut(s) 375
LmnI GCTCC 3 cut(s) 212, 542, 985
LweI GCATC 2 cut(s) 691, 974
MaeI CTAG 2 cut(s) 105, 1002
MaeIII GTNAC 5 cut(s) 295, 546, 595, 726, 865
MalI GATC 7 cut(s) 162, 260, 409, 825, 912, 939, 1038
MboI GATC 7 cut(s) 160, 258, 407, 823, 910, 937, 1036
MboII GAAGA 6 cut(s) 59, 362, 481, 825, 843, 939
MflI RGATCY 4 cut(s) 258, 407, 823, 1036
MhlI GDGCHC 1 cut(s) 539
MluCI AATT 6 cut(s) 193, 435, 585, 682, 760, 931
MlyI GAGTC 3 cut(s) 458, 524, 810
MmeI TCCRAC 2 cut(s) 382, 771
MnlI CCTC 8 cut(s) 141, 168, 241, 398, 499, 516, 561, 765
Mph1103I ATGCAT 1 cut(s) 1069
MroXI GAANNNNTTC 1 cut(s) 685
MseI TTAA 3 cut(s) 303, 434, 1023
MspI CCGG 2 cut(s) 60, 606
MspR9I CCNGG 2 cut(s) 632, 828
MvaI CCWGG 2 cut(s) 632, 828
MwoI GCNNNNNNNGC 1 cut(s) 50
NcoI CCATGG 1 cut(s) 959
NdeII GATC 7 cut(s) 160, 258, 407, 823, 910, 937, 1036
NlaIII CATG 3 cut(s) 214, 875, 963
NlaIV GGNNCC 5 cut(s) 355, 604, 636, 825, 832
NmeAIII GCCGAG 2 cut(s) 225, 442
NmuCI GTSAC 1 cut(s) 546
NsiI ATGCAT 1 cut(s) 1069
PaeR7I CTCGAG 1 cut(s) 532
PceI AGGCCT 1 cut(s) 115
PciSI GCTCTTC 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 685
PfeI GAWTC 2 cut(s) 307, 990
PinAI ACCGGT 1 cut(s) 605
PleI GAGTC 3 cut(s) 457, 524, 810
PpsI GAGTC 3 cut(s) 457, 524, 810
PpuMI RGGWCCY 1 cut(s) 634
PshBI ATTAAT 1 cut(s) 434
Psp124BI GAGCTC 1 cut(s) 539
Psp5II RGGWCCY 1 cut(s) 634
Psp6I CCWGG 2 cut(s) 630, 826
PspEI GGTNACC 1 cut(s) 546
PspGI CCWGG 2 cut(s) 630, 826
PspN4I GGNNCC 5 cut(s) 355, 604, 636, 825, 832
PspPI GGNCC 2 cut(s) 634, 830
PspPPI RGGWCCY 1 cut(s) 634
PspXI VCTCGAGB 1 cut(s) 532
PsuI RGATCY 4 cut(s) 258, 407, 823, 1036
RsaI GTAC 3 cut(s) 604, 669, 710
RsaNI GTAC 3 cut(s) 603, 668, 709
SacI GAGCTC 1 cut(s) 539
SalI GTCGAC 1 cut(s) 882
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 3 cut(s) 303, 434, 1023
Sau3AI GATC 7 cut(s) 160, 258, 407, 823, 910, 937, 1036
Sau96I GGNCC 2 cut(s) 634, 830
SchI GAGTC 3 cut(s) 458, 524, 810
ScrFI CCNGG 2 cut(s) 632, 828
SduI GDGCHC 1 cut(s) 539
SfaNI GCATC 2 cut(s) 691, 974
SfcI CTRYAG 1 cut(s) 501
Sfr274I CTCGAG 1 cut(s) 532
SinI GGWCC 2 cut(s) 634, 830
SlaI CTCGAG 1 cut(s) 532
SmlI CTYRAG 2 cut(s) 493, 532
SmoI CTYRAG 2 cut(s) 493, 532
Sse9I AATT 6 cut(s) 193, 435, 585, 682, 760, 931
SseBI AGGCCT 1 cut(s) 115
SsiI CCGC 1 cut(s) 454
SspI AATATT 1 cut(s) 715
SspMI CTAG 2 cut(s) 105, 1002
SstI GAGCTC 1 cut(s) 539
StuI AGGCCT 1 cut(s) 115
StyD4I CCNGG 2 cut(s) 630, 826
StyI CCWWGG 3 cut(s) 953, 959, 983
TaaI ACNGT 2 cut(s) 127, 754
TaqI TCGA 2 cut(s) 533, 883
TaqII GACCGA 1 cut(s) 869
TasI AATT 6 cut(s) 193, 435, 585, 682, 760, 931
TatI WGTACW 2 cut(s) 667, 708
TfiI GAWTC 2 cut(s) 307, 990
Tru1I TTAA 3 cut(s) 303, 434, 1023
Tru9I TTAA 3 cut(s) 303, 434, 1023
TscAI CASTG 3 cut(s) 189, 273, 841
TseFI GTSAC 1 cut(s) 546
Tsp45I GTSAC 1 cut(s) 546
TspDTI ATGAA 2 cut(s) 441, 843
TspGWI ACGGA 1 cut(s) 628
TspRI CASTG 3 cut(s) 189, 273, 841
VpaK11BI GGWCC 2 cut(s) 634, 830
VspI ATTAAT 1 cut(s) 434
XapI RAATTY 2 cut(s) 585, 682
XhoI CTCGAG 1 cut(s) 532
XmiI GTMKAC 2 cut(s) 610, 883
XmnI GAANNNNTTC 1 cut(s) 685
XspI CTAG 2 cut(s) 105, 1002
Zsp2I ATGCAT 1 cut(s) 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.