Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002957

Physical Location & Seq

Genomic Coordinates Forward (+)

44633643 .. 44635085

Gene Structure 1443 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG359700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGATGTGGCAGATAGAAGGGGATATTTTGGCTGTAAAGAAAGCACTTGTTGCTGTCTCCGGCCGTCTTCAAGATTGTCCACCAGTTGACAAGACAAGGATGACTGGAAGTAGGCCTATTGAGACAGTTCCTCGTGAAACTTTACCTGATATTCGTGTAGATCACCTTTCACAGAGGAACTCAGTGATTTCCAATTTGCCGAGCAGCTCCATGAGTTATGCTTCAGGAGTTTGTCTGCCATCAATAGAGGCTGAAAGGATCTCAACACTGGATACAAGAACACTCCAGCAGGAAGTTACTTTTAAGATTCTTTGCGACAATGATAGGGTTGGGGGTGTCATTGGAAAAGGGGGTGCCATTGTCAAGGCTCTTCAGAATGAGACTGGTGCTACTATAAGTGTTGGAGGATCTGTGGCCGAGTGTGATGAAAGATTAATTACTAATCCTGAGTCCCGCTACTCTCCAGCACAAAAGGGTCTTGTTCTTGTCTTCTCAAGGTCTGTAGAGGCAGGCATTGAAAAGGGGCAAGACTCGAGCTCCAAAGGGTCACCTCTTATTGCACGCCTTGTTGTCCCGACAAGCCAAGTTGGTGGTGACCAGGTCCCGAAGTGTGCCGTAGAGAATGACGAAGTTGTACAGGTGTCAAGAAATTTTTCAAGTGTGCAAGATGCTTTGTACAATATTACTGGTAGGTTACGAGATAACCTTTTCTCCAACACAGTAAATAATTCTGGAAGGAGGAATAGTTCAGCCGTGCTAACAGATACCAATCCTTATGGAAGACTCAGGGATCCTGCTCCTACTAGATTTCAGCCTTCTTCATCAGTTGGTGTTACTCATGGTCTCGGTCGACATACTACTCTAACTCAAAGTATGGATCATCTTGGACTTTCCCATAATTTAGATCATCCTTCTTCACCAAGGCCATGGGCATCACAGATGGTTGCTCCAAGGGGAATCTCAGATACTAGCAGGGGTTTGACTTCTCTTAAAAGTGGCTCGGATCTTGGTAGGTTAGTAATGTCGCACAATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009909 GO:0009911 GO:0016604 GO:0016607 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0070013 GO:0090567 GO:0090700 GO:0099402 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

345

Amino Acids

36.98

Weight (kDa)

8.61

Isoelectric Point (pI)

51.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	100 - 147	2e-10	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64390 AT5G64390 AT5G64390
fragaria_vesca	FvH4_2g11560 FvH4_2g11560 FvH4_2g11560
malus_domestica	MD05G1048400.v1.1 MD10G1054800.v1.1
prunus_persica	Prupe.8G070900_v2.0.a1
pyrus_communis	pycom05g04000 pycom10g04180
rosa_chinensis	RchiOBHm_Chr1g0353311 RchiOBHm_Chr4g0385021 RchiOBHm_Chr6g0270731 RchiOBHm_Chr6g0272811
rosa_laevigata	RLG00000013774
rosa_multiflora	Rmu_co8284529.1_g000001 Rmu_sc0000642.1_g000012 Rmu_sc0041041.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085770 Rroxscaffold_7G00197640
rosa_rugosa	Rorug06G0056000 Rorug06G0056100 Rorug06G0056200
rosa_samantha	Rh2DG204000 Rh4CG002400 Rh4CG168900 Rh6AG157400 Rh6AG175200 Rh6BG140200 Rh6BG178600 Rh6CG174800 Rh6DG123600 Rh6DG167400 Rh6DG180500 Rh7AG209600 Rh7CG359700
rosa_wichuraiana	Rw6G014930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	353
AccI	GTMKAC	1 cut(s)	850
AciI	CCGC	1 cut(s)	454
AclWI	GGATC	6 cut(s)	266, 415, 785, 798, 885, 1011
AcoI	YGGCCR	2 cut(s)	61, 414
AcsI	RAATTY	1 cut(s)	649
AcuI	CTGAAG	2 cut(s)	207, 356
AfaI	GTAC	2 cut(s)	636, 677
AgsI	TTSAA	3 cut(s)	71, 518, 657
AjnI	CCWGG	1 cut(s)	597
AloI	GAACNNNNNNTCC	2 cut(s)	730, 762
AluBI	AGCT	2 cut(s)	207, 537
AluI	AGCT	2 cut(s)	207, 537
Alw21I	GWGCWC	1 cut(s)	539
Alw26I	GTCTC	4 cut(s)	61, 116, 374, 848
AlwI	GGATC	6 cut(s)	266, 415, 785, 798, 885, 1011
Ama87I	CYCGRG	1 cut(s)	532
AoxI	GGCC	4 cut(s)	61, 113, 414, 923
ApeKI	GCWGC	1 cut(s)	204
ApoI	RAATTY	1 cut(s)	649
AseI	ATTAAT	1 cut(s)	434
Asp700I	GAANNNNTTC	1 cut(s)	652
AspS9I	GGNCC	1 cut(s)	601
AsuHPI	GGTGA	4 cut(s)	155, 540, 605, 909
AvaI	CYCGRG	1 cut(s)	532
AvaII	GGWCC	1 cut(s)	601
BamHI	GGATCC	1 cut(s)	790
BanI	GGYRCC	1 cut(s)	353
BanII	GRGCYC	1 cut(s)	539
BauI	CACGAG	1 cut(s)	132
BbsI	GAAGAC	3 cut(s)	59, 481, 787
Bbv12I	GWGCWC	1 cut(s)	539
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	2 cut(s)	247, 934
BceAI	ACGGC	3 cut(s)	48, 599, 737
BciT130I	CCWGG	1 cut(s)	599
BciVI	GTATCC	1 cut(s)	265
BcoDI	GTCTC	4 cut(s)	61, 116, 374, 848
BfaI	CTAG	2 cut(s)	804, 969
BfmI	CTRYAG	1 cut(s)	501
BfuI	GTATCC	1 cut(s)	265
BisI	GCNGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	599
Bme18I	GGWCC	1 cut(s)	601
BmeT110I	CYCGRG	1 cut(s)	532
BmgT120I	GGNCC	1 cut(s)	601
BmiI	GGNNCC	3 cut(s)	355, 603, 792
BmrFI	CCNGG	1 cut(s)	599
BmsI	GCATC	2 cut(s)	658, 941
BpiI	GAAGAC	3 cut(s)	59, 481, 787
BpmI	CTGGAG	2 cut(s)	269, 447
BpuEI	CTTGAG	1 cut(s)	478
BsaBI	GATNNNNATC	1 cut(s)	768
BsaI	GGTCTC	1 cut(s)	848
BsaJI	CCNNGG	3 cut(s)	920, 926, 950
BsaXI	ACNNNNNCTCC	8 cut(s)	396, 426, 521, 551, 695, 725, 730, 760
Bse1I	ACTGG	5 cut(s)	83, 109, 273, 388, 691
Bse8I	GATNNNNATC	1 cut(s)	768
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	3 cut(s)	920, 926, 950
BseGI	GGATG	2 cut(s)	105, 907
BseJI	GATNNNNATC	1 cut(s)	768
BseMII	CTCAG	4 cut(s)	195, 438, 799, 975
BseNI	ACTGG	5 cut(s)	83, 109, 273, 388, 691
BseX3I	CGGCCG	1 cut(s)	61
BseXI	GCAGC	1 cut(s)	216
Bsh1285I	CGRYCG	2 cut(s)	64, 850
BshFI	GGCC	4 cut(s)	63, 115, 416, 925
BshNI	GGYRCC	1 cut(s)	353
BsiEI	CGRYCG	2 cut(s)	64, 850
BsiHKAI	GWGCWC	1 cut(s)	539
BsiHKCI	CYCGRG	1 cut(s)	532
BsiSI	CCGG	1 cut(s)	60
BslFI	GGGAC	3 cut(s)	436, 557, 587
BsmAI	GTCTC	4 cut(s)	61, 116, 374, 848
BsmFI	GGGAC	3 cut(s)	436, 557, 587
BsnI	GGCC	4 cut(s)	63, 115, 416, 925
Bso31I	GGTCTC	1 cut(s)	848
BsoBI	CYCGRG	1 cut(s)	532
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp1407I	TGTACA	2 cut(s)	634, 675
Bsp143I	GATC	7 cut(s)	160, 258, 407, 790, 877, 904, 1003
Bsp19I	CCATGG	1 cut(s)	926
BspACI	CCGC	1 cut(s)	454
BspANI	GGCC	4 cut(s)	63, 115, 416, 925
BspCNI	CTCAG	4 cut(s)	194, 439, 798, 974
BspLI	GGNNCC	3 cut(s)	355, 603, 792
BspPI	GGATC	6 cut(s)	266, 415, 785, 798, 885, 1011
BspQI	GCTCTTC	1 cut(s)	375
BspT107I	GGYRCC	1 cut(s)	353
BspTNI	GGTCTC	1 cut(s)	848
BsrGI	TGTACA	2 cut(s)	634, 675
BsrI	ACTGG	5 cut(s)	83, 109, 273, 388, 691
BssECI	CCNNGG	3 cut(s)	920, 926, 950
BssMI	GATC	7 cut(s)	160, 258, 407, 790, 877, 904, 1003
BssSI	CACGAG	1 cut(s)	132
BssT1I	CCWWGG	3 cut(s)	920, 926, 950
Bst2BI	CACGAG	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	2 cut(s)	127, 721
Bst6I	CTCTTC	1 cut(s)	375
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstAUI	TGTACA	2 cut(s)	634, 675
BstC8I	GCNNGC	2 cut(s)	511, 562
BstDEI	CTNAG	4 cut(s)	181, 447, 785, 961
BstDSI	CCRYGG	1 cut(s)	926
BstEII	GGTNACC	2 cut(s)	546, 593
BstF5I	GGATG	2 cut(s)	105, 907
BstKTI	GATC	7 cut(s)	163, 261, 410, 793, 880, 907, 1006
BstMAI	GTCTC	4 cut(s)	61, 116, 374, 848
BstMBI	GATC	7 cut(s)	160, 258, 407, 790, 877, 904, 1003
BstMCI	CGRYCG	2 cut(s)	64, 850
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	1 cut(s)	599
BstPI	GGTNACC	2 cut(s)	546, 593
BstSCI	CCNGG	1 cut(s)	597
BstSFI	CTRYAG	1 cut(s)	501
BstV1I	GCAGC	1 cut(s)	216
BstV2I	GAAGAC	3 cut(s)	59, 481, 787
BstX2I	RGATCY	4 cut(s)	258, 407, 790, 1003
BstXI	CCANNNNNNTGG	2 cut(s)	590, 927
BstYI	RGATCY	4 cut(s)	258, 407, 790, 1003
BstZI	CGGCCG	1 cut(s)	61
BsuI	GTATCC	1 cut(s)	265
BsuRI	GGCC	4 cut(s)	63, 115, 416, 925
BtgI	CCRYGG	1 cut(s)	926
BtsCI	GGATG	2 cut(s)	105, 907
BtsIMutI	CAGTG	2 cut(s)	189, 266
Cac8I	GCNNGC	2 cut(s)	511, 562
Cfr13I	GGNCC	1 cut(s)	601
CsiI	ACCWGGT	1 cut(s)	597
Csp6I	GTAC	2 cut(s)	635, 676
CviAII	CATG	3 cut(s)	211, 839, 927
CviQI	GTAC	2 cut(s)	635, 676
DdeI	CTNAG	4 cut(s)	181, 447, 785, 961
DpnI	GATC	7 cut(s)	162, 260, 409, 792, 879, 906, 1005
DpnII	GATC	7 cut(s)	160, 258, 407, 790, 877, 904, 1003
EaeI	YGGCCR	2 cut(s)	61, 414
EagI	CGGCCG	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Ecl136II	GAGCTC	1 cut(s)	537
EclXI	CGGCCG	1 cut(s)	61
Eco130I	CCWWGG	3 cut(s)	920, 926, 950
Eco147I	AGGCCT	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	539
Eco31I	GGTCTC	1 cut(s)	848
Eco47I	GGWCC	1 cut(s)	601
Eco52I	CGGCCG	1 cut(s)	61
Eco53kI	GAGCTC	1 cut(s)	537
Eco57I	CTGAAG	2 cut(s)	207, 356
Eco88I	CYCGRG	1 cut(s)	532
Eco91I	GGTNACC	2 cut(s)	546, 593
EcoICRI	GAGCTC	1 cut(s)	537
EcoO109I	RGGNCCY	1 cut(s)	601
EcoO65I	GGTNACC	2 cut(s)	546, 593
EcoRII	CCWGG	1 cut(s)	597
EcoT14I	CCWWGG	3 cut(s)	920, 926, 950
EcoT22I	ATGCAT	1 cut(s)	1036
EcoT38I	GRGCYC	1 cut(s)	539
ErhI	CCWWGG	3 cut(s)	920, 926, 950
FaeI	CATG	3 cut(s)	214, 842, 930
FaqI	GGGAC	3 cut(s)	436, 557, 587
FatI	CATG	3 cut(s)	210, 838, 926
FauI	CCCGC	1 cut(s)	461
FblI	GTMKAC	1 cut(s)	850
Fnu4HI	GCNGC	1 cut(s)	205
FokI	GGATG	2 cut(s)	112, 894
FriOI	GRGCYC	1 cut(s)	539
Fsp4HI	GCNGC	1 cut(s)	205
FspBI	CTAG	2 cut(s)	804, 969
GluI	GCNGC	1 cut(s)	205
GsuI	CTGGAG	2 cut(s)	269, 447
HaeIII	GGCC	4 cut(s)	63, 115, 416, 925
HapII	CCGG	1 cut(s)	60
Hin1II	CATG	3 cut(s)	214, 842, 930
HincII	GTYRAC	2 cut(s)	88, 851
HindII	GTYRAC	2 cut(s)	88, 851
HinfI	GANTC	5 cut(s)	307, 449, 530, 783, 957
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	4 cut(s)	155, 540, 605, 909
Hpy166II	GTNNAC	3 cut(s)	80, 88, 851
Hpy188I	TCNGA	3 cut(s)	375, 964, 1003
Hpy188III	TCNNGA	8 cut(s)	71, 134, 225, 446, 574, 604, 645, 732
Hpy8I	GTNNAC	3 cut(s)	80, 88, 851
HpyAV	CCTTC	4 cut(s)	11, 729, 825, 921
HpyCH4III	ACNGT	2 cut(s)	127, 721
HpyCH4V	TGCA	3 cut(s)	560, 664, 1034
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	4 cut(s)	181, 447, 785, 961
Hsp92II	CATG	3 cut(s)	214, 842, 930
Kzo9I	GATC	7 cut(s)	160, 258, 407, 790, 877, 904, 1003
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	4 cut(s)	212, 542, 802, 952
Lsp1109I	GCAGC	1 cut(s)	216
LweI	GCATC	2 cut(s)	658, 941
MabI	ACCWGGT	1 cut(s)	597
MaeI	CTAG	2 cut(s)	804, 969
MaeIII	GTNAC	5 cut(s)	295, 546, 593, 693, 832
MalI	GATC	7 cut(s)	162, 260, 409, 792, 879, 906, 1005
MboI	GATC	7 cut(s)	160, 258, 407, 790, 877, 904, 1003
MboII	GAAGA	6 cut(s)	59, 362, 481, 792, 810, 906
MflI	RGATCY	4 cut(s)	258, 407, 790, 1003
MhlI	GDGCHC	1 cut(s)	539
MluCI	AATT	5 cut(s)	193, 435, 649, 727, 898
MlyI	GAGTC	3 cut(s)	458, 524, 777
MmeI	TCCRAC	2 cut(s)	382, 738
MnlI	CCTC	7 cut(s)	141, 168, 241, 398, 499, 561, 732
Mph1103I	ATGCAT	1 cut(s)	1036
MroXI	GAANNNNTTC	1 cut(s)	652
MseI	TTAA	3 cut(s)	303, 434, 990
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	599
MvaI	CCWGG	1 cut(s)	599
MwoI	GCNNNNNNNGC	1 cut(s)	50
NcoI	CCATGG	1 cut(s)	926
NdeII	GATC	7 cut(s)	160, 258, 407, 790, 877, 904, 1003
NlaIII	CATG	3 cut(s)	214, 842, 930
NlaIV	GGNNCC	3 cut(s)	355, 603, 792
NmeAIII	GCCGAG	2 cut(s)	225, 442
NmuCI	GTSAC	2 cut(s)	546, 593
NsiI	ATGCAT	1 cut(s)	1036
PaeR7I	CTCGAG	1 cut(s)	532
PceI	AGGCCT	1 cut(s)	115
PciSI	GCTCTTC	1 cut(s)	375
PdmI	GAANNNNTTC	1 cut(s)	652
PfeI	GAWTC	2 cut(s)	307, 957
PflFI	GACNNNGTC	1 cut(s)	599
PkrI	GCNGC	1 cut(s)	206
PleI	GAGTC	3 cut(s)	457, 524, 777
PpsI	GAGTC	3 cut(s)	457, 524, 777
PpuMI	RGGWCCY	1 cut(s)	601
PshBI	ATTAAT	1 cut(s)	434
Psp124BI	GAGCTC	1 cut(s)	539
Psp5II	RGGWCCY	1 cut(s)	601
Psp6I	CCWGG	1 cut(s)	597
PspEI	GGTNACC	2 cut(s)	546, 593
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	3 cut(s)	355, 603, 792
PspPI	GGNCC	1 cut(s)	601
PspPPI	RGGWCCY	1 cut(s)	601
PspXI	VCTCGAGB	1 cut(s)	532
PsuI	RGATCY	4 cut(s)	258, 407, 790, 1003
PsyI	GACNNNGTC	1 cut(s)	599
RsaI	GTAC	2 cut(s)	636, 677
RsaNI	GTAC	2 cut(s)	635, 676
SacI	GAGCTC	1 cut(s)	539
SalI	GTCGAC	1 cut(s)	849
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	3 cut(s)	303, 434, 990
SatI	GCNGC	1 cut(s)	205
Sau3AI	GATC	7 cut(s)	160, 258, 407, 790, 877, 904, 1003
Sau96I	GGNCC	1 cut(s)	601
SchI	GAGTC	3 cut(s)	458, 524, 777
ScrFI	CCNGG	1 cut(s)	599
SduI	GDGCHC	1 cut(s)	539
SexAI	ACCWGGT	1 cut(s)	597
SfaNI	GCATC	2 cut(s)	658, 941
SfcI	CTRYAG	1 cut(s)	501
Sfr274I	CTCGAG	1 cut(s)	532
SinI	GGWCC	1 cut(s)	601
SlaI	CTCGAG	1 cut(s)	532
SmlI	CTYRAG	2 cut(s)	493, 532
SmoI	CTYRAG	2 cut(s)	493, 532
Sse9I	AATT	5 cut(s)	193, 435, 649, 727, 898
SseBI	AGGCCT	1 cut(s)	115
SsiI	CCGC	1 cut(s)	454
SspI	AATATT	1 cut(s)	682
SspMI	CTAG	2 cut(s)	804, 969
SstI	GAGCTC	1 cut(s)	539
StuI	AGGCCT	1 cut(s)	115
StyD4I	CCNGG	1 cut(s)	597
StyI	CCWWGG	3 cut(s)	920, 926, 950
TaaI	ACNGT	2 cut(s)	127, 721
TaqI	TCGA	2 cut(s)	533, 850
TaqII	GACCGA	1 cut(s)	836
TasI	AATT	5 cut(s)	193, 435, 649, 727, 898
TatI	WGTACW	2 cut(s)	634, 675
TfiI	GAWTC	2 cut(s)	307, 957
Tru1I	TTAA	3 cut(s)	303, 434, 990
Tru9I	TTAA	3 cut(s)	303, 434, 990
TscAI	CASTG	2 cut(s)	189, 273
TseFI	GTSAC	2 cut(s)	546, 593
TseI	GCWGC	1 cut(s)	204
Tsp45I	GTSAC	2 cut(s)	546, 593
TspDTI	ATGAA	2 cut(s)	441, 810
TspRI	CASTG	2 cut(s)	189, 273
Tth111I	GACNNNGTC	1 cut(s)	599
VpaK11BI	GGWCC	1 cut(s)	601
VspI	ATTAAT	1 cut(s)	434
XapI	RAATTY	1 cut(s)	649
XhoI	CTCGAG	1 cut(s)	532
XmiI	GTMKAC	1 cut(s)	850
XmnI	GAANNNNTTC	1 cut(s)	652
XspI	CTAG	2 cut(s)	804, 969
Zsp2I	ATGCAT	1 cut(s)	1036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.