Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8284529.1

Orthogroup ID

OG0002957

Physical Location & Seq

Genomic Coordinates Reverse (-)

105 .. 683

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8284529.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgtcctcctcttcctccgagcccagcttagaaaacggatcctccaagcgctccaggtcgcgccagcagcaggctccgctcactgttcctccaggccacgtcgccttccgcatgctctgccacgcctcccgcatcggcggcgtcatcggcaagtccggcaccgtcatcaagcagctccagcaggccaccggcgcaaagatcagaatcgaggagccgccccaactcgactcgccggaccgggtcgtcgtcgtcattgctcccagcgcaatccggtccaagattgtgctcagtggagaccaagagattgaggtttccaaggcgcaagaggcgcttgtgagagtgttcgagaggattctagaggtggcggcggagaccggagcgataggagtaggggttggagtggtgtcttgccggtttctggcggagacggcgcaggtcggctcggtgataggcaagggcggcaaggtggtggagaagattagaaaagagactggctgtaaaattagggtcttgaatgagaaattgcccgtttgtgctggtccttctgacgagatggtagaggtgagcctaactacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009909 GO:0009911 GO:0016604 GO:0016607 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0070013 GO:0090567 GO:0090700 GO:0099402 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

192

Amino Acids

20.27

Weight (kDa)

9.18

Isoelectric Point (pI)

56.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64390 AT5G64390 AT5G64390
fragaria_vesca	FvH4_2g11560 FvH4_2g11560 FvH4_2g11560
malus_domestica	MD05G1048400.v1.1 MD10G1054800.v1.1
prunus_persica	Prupe.8G070900_v2.0.a1
pyrus_communis	pycom05g04000 pycom10g04180
rosa_chinensis	RchiOBHm_Chr1g0353311 RchiOBHm_Chr4g0385021 RchiOBHm_Chr6g0270731 RchiOBHm_Chr6g0272811
rosa_laevigata	RLG00000013774
rosa_multiflora	Rmu_co8284529.1_g000001 Rmu_sc0000642.1_g000012 Rmu_sc0041041.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085770 Rroxscaffold_7G00197640
rosa_rugosa	Rorug06G0056000 Rorug06G0056100 Rorug06G0056200
rosa_samantha	Rh2DG204000 Rh4CG002400 Rh4CG168900 Rh6AG157400 Rh6AG175200 Rh6BG140200 Rh6BG178600 Rh6CG174800 Rh6DG123600 Rh6DG167400 Rh6DG180500 Rh7AG209600 Rh7CG359700
rosa_wichuraiana	Rw6G014930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	242
Acc36I	ACCTGC	1 cut(s)	424
AccB1I	GGYRCC	1 cut(s)	158
AccBSI	CCGCTC	1 cut(s)	79
AccII	CGCG	1 cut(s)	61
AciI	CCGC	9 cut(s)	77, 109, 130, 138, 215, 365, 368, 422, 459
AclWI	GGATC	2 cut(s)	33, 46
AcyI	GRCGYC	1 cut(s)	141
AfeI	AGCGCT	1 cut(s)	50
AfiI	CCNNNNNNNGG	2 cut(s)	70, 418
AgsI	TTSAA	1 cut(s)	514
AjiI	CACGTC	1 cut(s)	100
AjnI	CCWGG	2 cut(s)	53, 91
AluBI	AGCT	2 cut(s)	27, 175
AluI	AGCT	2 cut(s)	27, 175
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	4 cut(s)	288, 365, 419, 482
AlwI	GGATC	2 cut(s)	33, 46
Aor51HI	AGCGCT	1 cut(s)	50
AoxI	GGCC	2 cut(s)	94, 183
ApeKI	GCWGC	2 cut(s)	67, 172
AspLEI	GCGC	7 cut(s)	51, 63, 194, 266, 322, 331, 433
AspS9I	GGNCC	3 cut(s)	235, 273, 539
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	2 cut(s)	457, 574
AvaII	GGWCC	3 cut(s)	235, 273, 539
BamHI	GGATCC	1 cut(s)	38
BanI	GGYRCC	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	79, 184
BccI	CCATC	1 cut(s)	547
BceAI	ACGGC	1 cut(s)	444
BciT130I	CCWGG	2 cut(s)	55, 93
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	4 cut(s)	288, 365, 419, 482
BfaI	CTAG	1 cut(s)	356
BfoI	RGCGCY	2 cut(s)	52, 332
BfuAI	ACCTGC	1 cut(s)	424
BisI	GCNGC	6 cut(s)	68, 139, 173, 215, 366, 460
BlsI	GCNGC	6 cut(s)	69, 140, 174, 216, 367, 461
Bme1390I	CCNGG	3 cut(s)	55, 93, 239
Bme18I	GGWCC	3 cut(s)	235, 273, 539
BmgBI	CACGTC	1 cut(s)	100
BmgT120I	GGNCC	3 cut(s)	235, 273, 539
BmiI	GGNNCC	4 cut(s)	40, 75, 160, 213
BmrFI	CCNGG	3 cut(s)	55, 93, 239
BmsI	GCATC	1 cut(s)	141
BpmI	CTGGAG	3 cut(s)	37, 75, 161
BpuMI	CCSGG	1 cut(s)	239
BsaBI	GATNNNNATC	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	141
BsaI	GGTCTC	2 cut(s)	288, 365
BsaJI	CCNNGG	1 cut(s)	315
BsaWI	WCCGGW	2 cut(s)	270, 374
BsaXI	ACNNNNNCTCC	6 cut(s)	26, 56, 73, 103, 378, 408
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 418
Bse118I	RCCGGY	2 cut(s)	188, 411
Bse1I	ACTGG	1 cut(s)	496
Bse3DI	GCAATG	1 cut(s)	252
Bse8I	GATNNNNATC	1 cut(s)	203
BseBI	CCWGG	2 cut(s)	55, 93
BseDI	CCNNGG	1 cut(s)	315
BseJI	GATNNNNATC	1 cut(s)	203
BseLI	CCNNNNNNNGG	2 cut(s)	70, 418
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	301
BseNI	ACTGG	1 cut(s)	496
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	2 cut(s)	79, 184
BseYI	CCCAGC	2 cut(s)	23, 260
Bsh1236I	CGCG	1 cut(s)	61
BshFI	GGCC	2 cut(s)	96, 185
BshNI	GGYRCC	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	7 cut(s)	156, 189, 233, 238, 271, 375, 412
BslI	CCNNNNNNNGG	2 cut(s)	70, 418
BsmAI	GTCTC	4 cut(s)	288, 365, 419, 482
BsmBI	CGTCTC	1 cut(s)	419
BsnI	GGCC	2 cut(s)	96, 185
Bso31I	GGTCTC	2 cut(s)	288, 365
Bsp1286I	GDGCHC	2 cut(s)	24, 288
Bsp143I	GATC	2 cut(s)	38, 198
BspACI	CCGC	9 cut(s)	77, 109, 130, 138, 215, 365, 368, 422, 459
BspANI	GGCC	2 cut(s)	96, 185
BspCNI	CTCAG	1 cut(s)	300
BspFNI	CGCG	1 cut(s)	61
BspLI	GGNNCC	4 cut(s)	40, 75, 160, 213
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	2 cut(s)	33, 46
BspT107I	GGYRCC	1 cut(s)	158
BspTNI	GGTCTC	2 cut(s)	288, 365
BsrBI	CCGCTC	1 cut(s)	79
BsrDI	GCAATG	1 cut(s)	252
BsrFI	RCCGGY	2 cut(s)	188, 411
BsrI	ACTGG	1 cut(s)	496
BssAI	RCCGGY	2 cut(s)	188, 411
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	2 cut(s)	38, 198
BssNI	GRCGYC	1 cut(s)	141
BssT1I	CCWWGG	1 cut(s)	315
Bst2UI	CCWGG	2 cut(s)	55, 93
Bst4CI	ACNGT	2 cut(s)	85, 163
Bst6I	CTCTTC	1 cut(s)	16
BstACI	GRCGYC	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	4 cut(s)	65, 72, 113, 183
BstDEI	CTNAG	2 cut(s)	28, 287
BstFNI	CGCG	1 cut(s)	61
BstH2I	RGCGCY	2 cut(s)	52, 332
BstHHI	GCGC	7 cut(s)	51, 63, 194, 266, 322, 331, 433
BstKTI	GATC	2 cut(s)	41, 201
BstMAI	GTCTC	4 cut(s)	288, 365, 419, 482
BstMBI	GATC	2 cut(s)	38, 198
BstNI	CCWGG	2 cut(s)	55, 93
BstNSI	RCATGY	1 cut(s)	115
BstSCI	CCNGG	3 cut(s)	53, 91, 237
BstUI	CGCG	1 cut(s)	61
BstV1I	GCAGC	2 cut(s)	79, 184
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BsuRI	GGCC	2 cut(s)	96, 185
BtrI	CACGTC	1 cut(s)	100
BtsIMutI	CAGTG	2 cut(s)	81, 295
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	4 cut(s)	65, 72, 113, 183
CfoI	GCGC	7 cut(s)	51, 63, 194, 266, 322, 331, 433
Cfr10I	RCCGGY	2 cut(s)	188, 411
Cfr13I	GGNCC	3 cut(s)	235, 273, 539
CpoI	CGGWCCG	1 cut(s)	235
CseI	GACGC	1 cut(s)	130
CspI	CGGWCCG	1 cut(s)	235
CviAII	CATG	1 cut(s)	112
DdeI	CTNAG	2 cut(s)	28, 287
DpnI	GATC	2 cut(s)	40, 200
DpnII	GATC	2 cut(s)	38, 198
DrdI	GACNNNNNNGTC	1 cut(s)	242
DseDI	GACNNNNNNGTC	1 cut(s)	242
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
EciI	GGCGGA	2 cut(s)	383, 437
Eco130I	CCWWGG	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	24
Eco31I	GGTCTC	2 cut(s)	288, 365
Eco47I	GGWCC	3 cut(s)	235, 273, 539
Eco47III	AGCGCT	1 cut(s)	50
EcoRII	CCWGG	2 cut(s)	53, 91
EcoT14I	CCWWGG	1 cut(s)	315
EcoT38I	GRGCYC	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	315
Esp3I	CGTCTC	1 cut(s)	419
FaeI	CATG	1 cut(s)	115
FaiI	YATR	1 cut(s)	113
FalI	AAGNNNNNCTT	2 cut(s)	315, 347
FatI	CATG	1 cut(s)	111
FauI	CCCGC	1 cut(s)	137
Fnu4HI	GCNGC	6 cut(s)	68, 139, 173, 215, 366, 460
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	6 cut(s)	68, 139, 173, 215, 366, 460
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	7 cut(s)	50, 62, 193, 265, 321, 330, 432
GluI	GCNGC	6 cut(s)	68, 139, 173, 215, 366, 460
GsaI	CCCAGC	2 cut(s)	27, 264
GsuI	CTGGAG	3 cut(s)	37, 75, 161
HaeII	RGCGCY	2 cut(s)	52, 332
HaeIII	GGCC	2 cut(s)	96, 185
HapII	CCGG	7 cut(s)	156, 189, 233, 238, 271, 375, 412
HgaI	GACGC	1 cut(s)	130
HhaI	GCGC	7 cut(s)	51, 63, 194, 266, 322, 331, 433
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	115
Hin6I	GCGC	7 cut(s)	49, 61, 192, 264, 320, 329, 431
HinP1I	GCGC	7 cut(s)	49, 61, 192, 264, 320, 329, 431
HinfI	GANTC	3 cut(s)	204, 227, 352
HpaII	CCGG	7 cut(s)	156, 189, 233, 238, 271, 375, 412
HphI	GGTGA	2 cut(s)	457, 574
Hpy188I	TCNGA	3 cut(s)	19, 203, 547
Hpy188III	TCNNGA	3 cut(s)	346, 356, 511
Hpy99I	CGWCG	3 cut(s)	104, 248, 251
HpyAV	CCTTC	2 cut(s)	115, 552
HpyCH4III	ACNGT	2 cut(s)	85, 163
HpyCH4IV	ACGT	1 cut(s)	99
HpyF3I	CTNAG	2 cut(s)	28, 287
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	115
HspAI	GCGC	7 cut(s)	49, 61, 192, 264, 320, 329, 431
Kzo9I	GATC	2 cut(s)	38, 198
LmnI	GCTCC	6 cut(s)	56, 79, 180, 211, 262, 377
Lsp1109I	GCAGC	2 cut(s)	79, 184
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	1 cut(s)	99
MalI	GATC	2 cut(s)	40, 200
MbiI	CCGCTC	1 cut(s)	79
MboI	GATC	2 cut(s)	38, 198
MboII	GAAGA	2 cut(s)	3, 487
MflI	RGATCY	1 cut(s)	38
MhlI	GDGCHC	2 cut(s)	24, 288
MluCI	AATT	2 cut(s)	501, 521
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	376
MspI	CCGG	7 cut(s)	156, 189, 233, 238, 271, 375, 412
MspR9I	CCNGG	3 cut(s)	55, 93, 239
MvaI	CCWGG	2 cut(s)	55, 93
MvnI	CGCG	1 cut(s)	61
NciI	CCSGG	1 cut(s)	239
NdeII	GATC	2 cut(s)	38, 198
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	4 cut(s)	40, 75, 160, 213
NspI	RCATGY	1 cut(s)	115
PaeI	GCATGC	1 cut(s)	115
PfeI	GAWTC	2 cut(s)	204, 352
PflFI	GACNNNGTC	1 cut(s)	239
PkrI	GCNGC	6 cut(s)	69, 140, 174, 216, 367, 461
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
Psp6I	CCWGG	2 cut(s)	53, 91
PspFI	CCCAGC	2 cut(s)	23, 260
PspGI	CCWGG	2 cut(s)	53, 91
PspN4I	GGNNCC	4 cut(s)	40, 75, 160, 213
PspPI	GGNCC	3 cut(s)	235, 273, 539
PsuI	RGATCY	1 cut(s)	38
PsyI	GACNNNGTC	1 cut(s)	239
Rsr2I	CGGWCCG	1 cut(s)	235
RsrII	CGGWCCG	1 cut(s)	235
SatI	GCNGC	6 cut(s)	68, 139, 173, 215, 366, 460
Sau3AI	GATC	2 cut(s)	38, 198
Sau96I	GGNCC	3 cut(s)	235, 273, 539
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	3 cut(s)	55, 93, 239
SduI	GDGCHC	2 cut(s)	24, 288
SetI	ASST	9 cut(s)	29, 59, 102, 177, 312, 363, 438, 468, 564
SfaNI	GCATC	1 cut(s)	141
SgrAI	CRCCGGYG	1 cut(s)	188
SinI	GGWCC	3 cut(s)	235, 273, 539
SphI	GCATGC	1 cut(s)	115
Sse9I	AATT	2 cut(s)	501, 521
SsiI	CCGC	9 cut(s)	77, 109, 130, 138, 215, 365, 368, 422, 459
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	3 cut(s)	53, 91, 237
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	85, 163
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	3 cut(s)	207, 225, 345
TasI	AATT	2 cut(s)	501, 521
TauI	GCSGC	4 cut(s)	141, 217, 368, 462
TfiI	GAWTC	2 cut(s)	204, 352
TscAI	CASTG	2 cut(s)	88, 295
TseI	GCWGC	2 cut(s)	67, 172
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	2 cut(s)	88, 295
Tth111I	GACNNNGTC	1 cut(s)	239
VpaK11BI	GGWCC	3 cut(s)	235, 273, 539
XbaI	TCTAGA	1 cut(s)	355
XceI	RCATGY	1 cut(s)	115
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.