Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041041.1

Orthogroup ID

OG0002957

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 694

Gene Structure 694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041041.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 515 bp

atgatgtggcagatagaaggggatattttggctgtaaagaaagcatttgttgctgtctccggccgtcttcaagattgtccaccagttgacaagacaaggatgactggaagtaggcctattgagacagttcctcgtgaaactttacctgatattcgtgtagatcacctttcacagaggaactcagtgatttccaatttgccgagcagctccatgagttatgcttcaagagtttgtctgccatcaatagaggctgaaaggatctcaacactggatacaagaacactccagcaggaagttacttttacgattctttgcgccaatgatagggttgggggtgtcattggaaaagggggtgccattgtcaaggctcttcaaaatgagactggtgctactataagtgttggaggatctaatcctgagtcccgctactctccagcacaaaagggtcttgctcttgtcttctcaaggtctgtagaggcaggcattgaaaaggggcaagactcgagctccaaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009909 GO:0009911 GO:0016604 GO:0016607 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0070013 GO:0090567 GO:0090700 GO:0099402 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

172

Amino Acids

18.38

Weight (kDa)

8.5

Isoelectric Point (pI)

59.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64390 AT5G64390 AT5G64390
fragaria_vesca	FvH4_2g11560 FvH4_2g11560 FvH4_2g11560
malus_domestica	MD05G1048400.v1.1 MD10G1054800.v1.1
prunus_persica	Prupe.8G070900_v2.0.a1
pyrus_communis	pycom05g04000 pycom10g04180
rosa_chinensis	RchiOBHm_Chr1g0353311 RchiOBHm_Chr4g0385021 RchiOBHm_Chr6g0270731 RchiOBHm_Chr6g0272811
rosa_laevigata	RLG00000013774
rosa_multiflora	Rmu_co8284529.1_g000001 Rmu_sc0000642.1_g000012 Rmu_sc0041041.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085770 Rroxscaffold_7G00197640
rosa_rugosa	Rorug06G0056000 Rorug06G0056100 Rorug06G0056200
rosa_samantha	Rh2DG204000 Rh4CG002400 Rh4CG168900 Rh6AG157400 Rh6AG175200 Rh6BG140200 Rh6BG178600 Rh6CG174800 Rh6DG123600 Rh6DG167400 Rh6DG180500 Rh7AG209600 Rh7CG359700
rosa_wichuraiana	Rw6G014930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	353
AciI	CCGC	1 cut(s)	424
AclWI	GGATC	2 cut(s)	266, 415
AcoI	YGGCCR	1 cut(s)	61
AfiI	CCNNNNNNNGG	1 cut(s)	324
AgsI	TTSAA	4 cut(s)	71, 225, 374, 488
AluBI	AGCT	2 cut(s)	207, 507
AluI	AGCT	2 cut(s)	207, 507
Alw21I	GWGCWC	1 cut(s)	509
Alw26I	GTCTC	3 cut(s)	61, 116, 374
AlwI	GGATC	2 cut(s)	266, 415
Ama87I	CYCGRG	1 cut(s)	502
AoxI	GGCC	2 cut(s)	61, 113
ApeKI	GCWGC	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	502
BanI	GGYRCC	1 cut(s)	353
BanII	GRGCYC	1 cut(s)	509
BauI	CACGAG	1 cut(s)	132
BbsI	GAAGAC	2 cut(s)	59, 451
Bbv12I	GWGCWC	1 cut(s)	509
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	1 cut(s)	247
BceAI	ACGGC	1 cut(s)	48
BciVI	GTATCC	1 cut(s)	265
BcoDI	GTCTC	3 cut(s)	61, 116, 374
BfmI	CTRYAG	1 cut(s)	471
BfuI	GTATCC	1 cut(s)	265
BisI	GCNGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	206
BmeT110I	CYCGRG	1 cut(s)	502
BmiI	GGNNCC	1 cut(s)	355
BpiI	GAAGAC	2 cut(s)	59, 451
BpmI	CTGGAG	2 cut(s)	269, 417
BpuEI	CTTGAG	1 cut(s)	448
BsaXI	ACNNNNNCTCC	1 cut(s)	491
Bsc4I	CCNNNNNNNGG	1 cut(s)	324
Bse1I	ACTGG	4 cut(s)	83, 109, 273, 388
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	324
BseMII	CTCAG	2 cut(s)	195, 408
BseNI	ACTGG	4 cut(s)	83, 109, 273, 388
BseX3I	CGGCCG	1 cut(s)	61
BseXI	GCAGC	1 cut(s)	216
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	2 cut(s)	63, 115
BshNI	GGYRCC	1 cut(s)	353
BsiEI	CGRYCG	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	509
BsiHKCI	CYCGRG	1 cut(s)	502
BsiSI	CCGG	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	406
BslI	CCNNNNNNNGG	1 cut(s)	324
BsmAI	GTCTC	3 cut(s)	61, 116, 374
BsmFI	GGGAC	1 cut(s)	406
BsnI	GGCC	2 cut(s)	63, 115
BsoBI	CYCGRG	1 cut(s)	502
Bsp1286I	GDGCHC	1 cut(s)	509
Bsp143I	GATC	3 cut(s)	160, 258, 407
BspACI	CCGC	1 cut(s)	424
BspANI	GGCC	2 cut(s)	63, 115
BspCNI	CTCAG	2 cut(s)	194, 409
BspLI	GGNNCC	1 cut(s)	355
BspPI	GGATC	2 cut(s)	266, 415
BspQI	GCTCTTC	1 cut(s)	375
BspT107I	GGYRCC	1 cut(s)	353
BsrI	ACTGG	4 cut(s)	83, 109, 273, 388
BssMI	GATC	3 cut(s)	160, 258, 407
BssSI	CACGAG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	375
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	481
BstDEI	CTNAG	2 cut(s)	181, 417
BstF5I	GGATG	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	317
BstKTI	GATC	3 cut(s)	163, 261, 410
BstMAI	GTCTC	3 cut(s)	61, 116, 374
BstMBI	GATC	3 cut(s)	160, 258, 407
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstSFI	CTRYAG	1 cut(s)	471
BstV1I	GCAGC	1 cut(s)	216
BstV2I	GAAGAC	2 cut(s)	59, 451
BstX2I	RGATCY	2 cut(s)	258, 407
BstYI	RGATCY	2 cut(s)	258, 407
BstZI	CGGCCG	1 cut(s)	61
BsuI	GTATCC	1 cut(s)	265
BsuRI	GGCC	2 cut(s)	63, 115
BtsCI	GGATG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	189, 266
Cac8I	GCNNGC	1 cut(s)	481
CfoI	GCGC	1 cut(s)	317
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	7 cut(s)	32, 63, 115, 207, 251, 368, 507
CviKI_1	RGCY	7 cut(s)	32, 63, 115, 207, 251, 368, 507
DdeI	CTNAG	2 cut(s)	181, 417
DpnI	GATC	3 cut(s)	162, 260, 409
DpnII	GATC	3 cut(s)	160, 258, 407
EaeI	YGGCCR	1 cut(s)	61
EagI	CGGCCG	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Ecl136II	GAGCTC	1 cut(s)	507
EclXI	CGGCCG	1 cut(s)	61
Eco147I	AGGCCT	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	509
Eco52I	CGGCCG	1 cut(s)	61
Eco53kI	GAGCTC	1 cut(s)	507
Eco88I	CYCGRG	1 cut(s)	502
EcoICRI	GAGCTC	1 cut(s)	507
EcoT38I	GRGCYC	1 cut(s)	509
FaeI	CATG	1 cut(s)	214
FaiI	YATR	3 cut(s)	212, 219, 395
FaqI	GGGAC	1 cut(s)	406
FatI	CATG	1 cut(s)	210
FauI	CCCGC	1 cut(s)	431
Fnu4HI	GCNGC	1 cut(s)	205
FokI	GGATG	1 cut(s)	112
FriOI	GRGCYC	1 cut(s)	509
Fsp4HI	GCNGC	1 cut(s)	205
GlaI	GCGC	1 cut(s)	316
GluI	GCNGC	1 cut(s)	205
GsuI	CTGGAG	2 cut(s)	269, 417
HaeIII	GGCC	2 cut(s)	63, 115
HapII	CCGG	1 cut(s)	60
HhaI	GCGC	1 cut(s)	317
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	3 cut(s)	307, 419, 500
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	2 cut(s)	80, 88
Hpy188III	TCNNGA	4 cut(s)	71, 134, 225, 416
Hpy8I	GTNNAC	2 cut(s)	80, 88
HpyAV	CCTTC	1 cut(s)	11
HpyCH4III	ACNGT	1 cut(s)	127
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	2 cut(s)	181, 417
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	1 cut(s)	315
Kzo9I	GATC	3 cut(s)	160, 258, 407
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	2 cut(s)	212, 512
Lsp1109I	GCAGC	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	3 cut(s)	162, 260, 409
MboI	GATC	3 cut(s)	160, 258, 407
MboII	GAAGA	3 cut(s)	59, 362, 451
MflI	RGATCY	2 cut(s)	258, 407
MhlI	GDGCHC	1 cut(s)	509
MluCI	AATT	1 cut(s)	193
MlyI	GAGTC	2 cut(s)	428, 494
MmeI	TCCRAC	1 cut(s)	382
MnlI	CCTC	5 cut(s)	141, 168, 241, 398, 469
MspI	CCGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	3 cut(s)	160, 258, 407
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	1 cut(s)	355
NmeAIII	GCCGAG	1 cut(s)	225
PaeR7I	CTCGAG	1 cut(s)	502
PceI	AGGCCT	1 cut(s)	115
PciSI	GCTCTTC	1 cut(s)	375
PfeI	GAWTC	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	206
PleI	GAGTC	2 cut(s)	427, 494
PpsI	GAGTC	2 cut(s)	427, 494
Psp124BI	GAGCTC	1 cut(s)	509
PspN4I	GGNNCC	1 cut(s)	355
PspXI	VCTCGAGB	1 cut(s)	502
PsuI	RGATCY	2 cut(s)	258, 407
SacI	GAGCTC	1 cut(s)	509
SapI	GCTCTTC	1 cut(s)	375
SatI	GCNGC	1 cut(s)	205
Sau3AI	GATC	3 cut(s)	160, 258, 407
SchI	GAGTC	2 cut(s)	428, 494
SduI	GDGCHC	1 cut(s)	509
SetI	ASST	5 cut(s)	148, 168, 209, 470, 509
SfcI	CTRYAG	1 cut(s)	471
Sfr274I	CTCGAG	1 cut(s)	502
SlaI	CTCGAG	1 cut(s)	502
SmlI	CTYRAG	2 cut(s)	463, 502
SmoI	CTYRAG	2 cut(s)	463, 502
Sse9I	AATT	1 cut(s)	193
SseBI	AGGCCT	1 cut(s)	115
SsiI	CCGC	1 cut(s)	424
SstI	GAGCTC	1 cut(s)	509
StuI	AGGCCT	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	127
TaqI	TCGA	1 cut(s)	503
TasI	AATT	1 cut(s)	193
TfiI	GAWTC	1 cut(s)	307
TscAI	CASTG	2 cut(s)	189, 273
TseI	GCWGC	1 cut(s)	204
TspRI	CASTG	2 cut(s)	189, 273
XhoI	CTCGAG	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.