Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002957

Physical Location & Seq

Genomic Coordinates Forward (+)

36996462 .. 36996914

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG168900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGATGTGGCAGATAGAAGGGGATATTTTGGCTGTAAAGAAAGCACTTGTTGCTGTCTCCGGCCGTCTTCAAGATTGTCCACCAGTTGACAAGACAAGGATGACTGGAAGTAGGCCTATTGAGACAGTTCCTCGTGAAACTTTACCTGATATTCGTGTAGATCACCTTTCACAGAGGAACTCAGTGATTTCCAATTTGCCGAGCAGCTCCATGAGTTATGCTTCAGGAGTTTGTCTGCCATCAATAGAGGCTGAAAGGATCTCAACAATGGATACAAGAACACTCCAGCTGGAAGTTACTTTTAAGATTCTTTGCGACAATGATAGGGTTGGGGGTGTCATTGGAAAAGGGGGTGCCATTGTCAAGGCTCTTCAGAATGAGACTGGTGCTACTATAAGTGTTGGAGGATCTGTGGCCGAGTGTGATGAAAGATTAATTACTGTTACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009909 GO:0009911 GO:0016604 GO:0016607 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0070013 GO:0090567 GO:0090700 GO:0099402 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

150

Amino Acids

16.06

Weight (kDa)

5.42

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	100 - 149	2.7e-12	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64390 AT5G64390 AT5G64390
fragaria_vesca	FvH4_2g11560 FvH4_2g11560 FvH4_2g11560
malus_domestica	MD05G1048400.v1.1 MD10G1054800.v1.1
prunus_persica	Prupe.8G070900_v2.0.a1
pyrus_communis	pycom05g04000 pycom10g04180
rosa_chinensis	RchiOBHm_Chr1g0353311 RchiOBHm_Chr4g0385021 RchiOBHm_Chr6g0270731 RchiOBHm_Chr6g0272811
rosa_laevigata	RLG00000013774
rosa_multiflora	Rmu_co8284529.1_g000001 Rmu_sc0000642.1_g000012 Rmu_sc0041041.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085770 Rroxscaffold_7G00197640
rosa_rugosa	Rorug06G0056000 Rorug06G0056100 Rorug06G0056200
rosa_samantha	Rh2DG204000 Rh4CG002400 Rh4CG168900 Rh6AG157400 Rh6AG175200 Rh6BG140200 Rh6BG178600 Rh6CG174800 Rh6DG123600 Rh6DG167400 Rh6DG180500 Rh7AG209600 Rh7CG359700
rosa_wichuraiana	Rw6G014930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	353
AclWI	GGATC	2 cut(s)	266, 415
AcoI	YGGCCR	2 cut(s)	61, 414
AcuI	CTGAAG	2 cut(s)	207, 356
AgsI	TTSAA	1 cut(s)	71
AluBI	AGCT	2 cut(s)	207, 289
AluI	AGCT	2 cut(s)	207, 289
Alw26I	GTCTC	3 cut(s)	61, 116, 374
AlwI	GGATC	2 cut(s)	266, 415
AoxI	GGCC	3 cut(s)	61, 113, 414
ApeKI	GCWGC	1 cut(s)	204
AseI	ATTAAT	1 cut(s)	434
AsuHPI	GGTGA	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	353
BauI	CACGAG	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	1 cut(s)	247
BceAI	ACGGC	1 cut(s)	48
BciVI	GTATCC	1 cut(s)	265
BcoDI	GTCTC	3 cut(s)	61, 116, 374
BfuI	GTATCC	1 cut(s)	265
BisI	GCNGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	355
BpiI	GAAGAC	1 cut(s)	59
BpmI	CTGGAG	1 cut(s)	269
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bse1I	ACTGG	3 cut(s)	83, 109, 388
BseGI	GGATG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	3 cut(s)	83, 109, 388
BseX3I	CGGCCG	1 cut(s)	61
BseXI	GCAGC	1 cut(s)	216
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	3 cut(s)	63, 115, 416
BshNI	GGYRCC	1 cut(s)	353
BsiEI	CGRYCG	1 cut(s)	64
BsiSI	CCGG	1 cut(s)	60
BsmAI	GTCTC	3 cut(s)	61, 116, 374
BsnI	GGCC	3 cut(s)	63, 115, 416
Bsp143I	GATC	3 cut(s)	160, 258, 407
BspANI	GGCC	3 cut(s)	63, 115, 416
BspCNI	CTCAG	1 cut(s)	194
BspLI	GGNNCC	1 cut(s)	355
BspPI	GGATC	2 cut(s)	266, 415
BspQI	GCTCTTC	1 cut(s)	375
BspT107I	GGYRCC	1 cut(s)	353
BsrI	ACTGG	3 cut(s)	83, 109, 388
BssMI	GATC	3 cut(s)	160, 258, 407
BssSI	CACGAG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	132
Bst4CI	ACNGT	2 cut(s)	127, 442
Bst6I	CTCTTC	1 cut(s)	375
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	181
BstF5I	GGATG	1 cut(s)	105
BstKTI	GATC	3 cut(s)	163, 261, 410
BstMAI	GTCTC	3 cut(s)	61, 116, 374
BstMBI	GATC	3 cut(s)	160, 258, 407
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	216
BstV2I	GAAGAC	1 cut(s)	59
BstX2I	RGATCY	2 cut(s)	258, 407
BstYI	RGATCY	2 cut(s)	258, 407
BstZI	CGGCCG	1 cut(s)	61
BsuI	GTATCC	1 cut(s)	265
BsuRI	GGCC	3 cut(s)	63, 115, 416
BtsCI	GGATG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	189
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	8 cut(s)	32, 63, 115, 207, 251, 289, 368, 416
CviKI_1	RGCY	8 cut(s)	32, 63, 115, 207, 251, 289, 368, 416
DdeI	CTNAG	1 cut(s)	181
DpnI	GATC	3 cut(s)	162, 260, 409
DpnII	GATC	3 cut(s)	160, 258, 407
EaeI	YGGCCR	2 cut(s)	61, 414
EagI	CGGCCG	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
EclXI	CGGCCG	1 cut(s)	61
Eco147I	AGGCCT	1 cut(s)	115
Eco52I	CGGCCG	1 cut(s)	61
Eco57I	CTGAAG	2 cut(s)	207, 356
FaeI	CATG	1 cut(s)	214
FaiI	YATR	4 cut(s)	212, 219, 395, 451
FatI	CATG	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	205
FokI	GGATG	1 cut(s)	112
Fsp4HI	GCNGC	1 cut(s)	205
GluI	GCNGC	1 cut(s)	205
GsuI	CTGGAG	1 cut(s)	269
HaeIII	GGCC	3 cut(s)	63, 115, 416
HapII	CCGG	1 cut(s)	60
Hin1II	CATG	1 cut(s)	214
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	1 cut(s)	307
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	2 cut(s)	80, 88
Hpy188I	TCNGA	1 cut(s)	375
Hpy188III	TCNNGA	3 cut(s)	71, 134, 225
Hpy8I	GTNNAC	2 cut(s)	80, 88
HpyAV	CCTTC	1 cut(s)	11
HpyCH4III	ACNGT	2 cut(s)	127, 442
HpyCH4V	TGCA	1 cut(s)	449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	1 cut(s)	181
Hsp92II	CATG	1 cut(s)	214
Kzo9I	GATC	3 cut(s)	160, 258, 407
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	8 cut(s)	73, 90, 96, 159, 210, 275, 299, 369
Lsp1109I	GCAGC	1 cut(s)	216
MaeIII	GTNAC	2 cut(s)	295, 442
MalI	GATC	3 cut(s)	162, 260, 409
MboI	GATC	3 cut(s)	160, 258, 407
MboII	GAAGA	2 cut(s)	59, 362
MflI	RGATCY	2 cut(s)	258, 407
MluCI	AATT	2 cut(s)	193, 435
MmeI	TCCRAC	1 cut(s)	382
MnlI	CCTC	4 cut(s)	141, 168, 241, 398
MseI	TTAA	2 cut(s)	303, 434
MspA1I	CMGCKG	1 cut(s)	289
MspI	CCGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	3 cut(s)	160, 258, 407
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	1 cut(s)	355
NmeAIII	GCCGAG	2 cut(s)	225, 442
PceI	AGGCCT	1 cut(s)	115
PciSI	GCTCTTC	1 cut(s)	375
PfeI	GAWTC	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	206
PshBI	ATTAAT	1 cut(s)	434
PspN4I	GGNNCC	1 cut(s)	355
PsuI	RGATCY	2 cut(s)	258, 407
PvuII	CAGCTG	1 cut(s)	289
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	2 cut(s)	303, 434
SatI	GCNGC	1 cut(s)	205
Sau3AI	GATC	3 cut(s)	160, 258, 407
SetI	ASST	4 cut(s)	148, 168, 209, 291
Sse9I	AATT	2 cut(s)	193, 435
SseBI	AGGCCT	1 cut(s)	115
StuI	AGGCCT	1 cut(s)	115
TaaI	ACNGT	2 cut(s)	127, 442
TasI	AATT	2 cut(s)	193, 435
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	2 cut(s)	303, 434
Tru9I	TTAA	2 cut(s)	303, 434
TscAI	CASTG	1 cut(s)	189
TseI	GCWGC	1 cut(s)	204
TspDTI	ATGAA	1 cut(s)	441
TspRI	CASTG	1 cut(s)	189
VspI	ATTAAT	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.