Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002957

Physical Location & Seq

Genomic Coordinates Reverse (-)

28681268 .. 28686405

Gene Structure 5138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24287

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1953 bp

ATGGGAAGCACCTTTCTCTCTCTACCAGCGAAGCGTTCAATTTCTTCGACAATGTCCTCCTCTTCCTCCGAGCCCAGCTTAGAAAACGGATCCTCCAAGCGCTCCAGGTCGCGCCAGCAGCAGGCTCCGCTCACTGTTCCTCCAGGCCACGTCGCCTTCCGCATGCTCTGCCACGCCTCCCGCATCGGCGGCGTCATCGGCAAGTCCGGCACCGTCATCAAGCAGCTCCAGCAGGCCACCGGCGCAAAGATCAGAATCGAGGAGCCGCCCCAACTCGACTCGCCGGACCGGGTCGTCGTAGTCATCGCTCCCAGCGCAATCCGGTCCAAGATTGTGGTCAGTGGAGACCAAGAGATTGAGGTTTCCAAGGCGCAAGAGGCGCTTTTGAGAGTGTTCGAGAGGATTCTAGAGGTGGCGGCGGAGACCGGAGCGATAGGAGTAGGGGTTGGAGTGGTGTCTTGCCGGTTTCTGGCGGAGACGGCGCAGGTCGGCTCGGTGATAGGCAAGGGCGGCAAGGTGGTGGAGAAGATTAGAAAAGAGACTGGCTGTAAAATTAGGGTCTTGAATGAGAAATTGCCCGTTTGTGCTGCTCCTTCTGACGAGATGGTAGAGATAGAAGGGGATATTTTGGCTGTAAAGAAAGCACTTGTTGCTGTCTCCAGCCGTCTTCAAGATTGTTCACCAGTTGACAAGACAAGGATGACTGGAAGTAGGCCTATTGAGACAGTTCCTCGTGAAACTTTACCTGATATTCGTGTAGATCACCTTTCACAGAGGAACTCAGTGATTTCCAATTTGCCGAGCAGCTCCATGAGTTATGCTTCAGGAGTTCGTCCGCCATCAATAGAGGCTGAAAGGATCTCAACACTGGATACAAGAACACTCCAGCAGGAAGTTACTTTTAAGATTCTTTGTGCCAATGATAGGGTTGGGGGTGTCATTGGAAAAGGGGGTGCCATTGTCAGGGCTCTTCAGAATGAGACTGGTGCTACTATAAGTGTTGGAGGATCTGTGGCCGAGTGTGATGAAAGATTAATTACTGTTACTGCCTCAGAGAATCCTGAGTCCCGCTACTCGCCAGCACAAAAGGGTCTTGTTCTTGTCTTCTCAAGGTCTGTAGAGGCAGGCATTGAAAAGGGGCAAGACTCGAGCTCCAAAGGGTCACCTCTTATTGCACGCCTTGTTGTCCCGACAAGCCAAGTTGGTTGTTTGCTGGGAAAAGGAGGTGTAATAGTTTCAGAGATTCGGAAGGTAACTGGTACCGGTATACGGATAATAGGTGGTGACCAGGTCCCGAAGTGTGCCTTAGAGAATGACGAAGTTGTACAGGTTTCAGGAAATTTTTCAAGTGTGCAAGATGCTTTGTACAATATTACTGGTAGGTTACGAGATAACCTTTTCTCCAACACAGTAAATAATTCTGGAAGGAGGAATAGTTCAGCCGTGCTAACAGATACCAGTCCTTATGGAAGACTCAGGGATCCTGCTCCTACTGGATTTCAGCCTTCTTCATCAGTTGGTGTTACTTATGGTCTCGGTCGACATACTACTCTAACTCAAAGTATGGATCATCTTGGACTTTCCCATAATTTAGATCATCCTTCTTCACCAAGGCCATGGGCAACACAGATGGTTGCTCCAAGGGGAATCTCAGATACTGACAGGGGTTTGACTTCTCTTAAAAGTGGCTCGGATCTTGGCAGTGGAAGCAAATCTGCCATTGTGACAAATACAACTGTAGAGATCATAGTTCCTGAAAATGTTATTAGCTCAGTGTACGGAGAGAATGGCACCAATTTGGCTCGACTGAGACAGATTTCCGGTGCCAAGGTCATAGTGCATGAACCCCGTCCCGGAACAACTGATAGGATTATTGTCATATCTGGGACACCTGACGAAACCCAGGCAGCACAGAGCCTCCTCCACGCATTCATTCTCACCGGTCCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009909 GO:0009911 GO:0016604 GO:0016607 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0070013 GO:0090567 GO:0090700 GO:0099402 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

650

Amino Acids

68.61

Weight (kDa)

9.04

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	53 - 104	4e-12	KH domain
KH_1	PF00013	154 - 219	1.7e-13	KH domain
KH_1	PF00013	300 - 352	1.8e-11	KH domain
KH_1	PF00013	392 - 458	6.8e-14	KH domain
KH_1	PF00013	579 - 642	3.6e-13	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64390 AT5G64390 AT5G64390
fragaria_vesca	FvH4_2g11560 FvH4_2g11560 FvH4_2g11560
malus_domestica	MD05G1048400.v1.1 MD10G1054800.v1.1
prunus_persica	Prupe.8G070900_v2.0.a1
pyrus_communis	pycom05g04000 pycom10g04180
rosa_chinensis	RchiOBHm_Chr1g0353311 RchiOBHm_Chr4g0385021 RchiOBHm_Chr6g0270731 RchiOBHm_Chr6g0272811
rosa_laevigata	RLG00000013774
rosa_multiflora	Rmu_co8284529.1_g000001 Rmu_sc0000642.1_g000012 Rmu_sc0041041.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085770 Rroxscaffold_7G00197640
rosa_rugosa	Rorug06G0056000 Rorug06G0056100 Rorug06G0056200
rosa_samantha	Rh2DG204000 Rh4CG002400 Rh4CG168900 Rh6AG157400 Rh6AG175200 Rh6BG140200 Rh6BG178600 Rh6CG174800 Rh6DG123600 Rh6DG167400 Rh6DG180500 Rh7AG209600 Rh7CG359700
rosa_wichuraiana	Rw6G014930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	293
Acc36I	ACCTGC	1 cut(s)	475
Acc65I	GGTACC	1 cut(s)	1259
AccB1I	GGYRCC	5 cut(s)	209, 953, 1259, 1790, 1823
AccBSI	CCGCTC	1 cut(s)	130
AccI	GTMKAC	2 cut(s)	1267, 1540
AccII	CGCG	1 cut(s)	112
AclWI	GGATC	8 cut(s)	84, 97, 866, 1015, 1475, 1488, 1575, 1701
AcoI	YGGCCR	1 cut(s)	1014
AcsI	RAATTY	1 cut(s)	1339
AcuI	CTGAAG	2 cut(s)	807, 956
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	4 cut(s)	1261, 1326, 1367, 1778
AfeI	AGCGCT	1 cut(s)	101
AfiI	CCNNNNNNNGG	6 cut(s)	121, 469, 924, 963, 1269, 1853
AgeI	ACCGGT	2 cut(s)	1262, 1940
AgsI	TTSAA	5 cut(s)	39, 565, 671, 1133, 1347
AjiI	CACGTC	1 cut(s)	151
AjnI	CCWGG	4 cut(s)	104, 142, 1287, 1902
AloI	GAACNNNNNNTCC	2 cut(s)	1420, 1452
AluBI	AGCT	5 cut(s)	78, 226, 807, 1152, 1770
AluI	AGCT	5 cut(s)	78, 226, 807, 1152, 1770
Alw21I	GWGCWC	1 cut(s)	1154
Alw26I	GTCTC	9 cut(s)	339, 416, 470, 533, 661, 716, 974, 1538, 1804
AlwI	GGATC	8 cut(s)	84, 97, 866, 1015, 1475, 1488, 1575, 1701
AlwNI	CAGNNNCTG	1 cut(s)	1658
Ama87I	CYCGRG	1 cut(s)	1147
Aor51HI	AGCGCT	1 cut(s)	101
AoxI	GGCC	5 cut(s)	145, 234, 713, 1014, 1613
ApeKI	GCWGC	5 cut(s)	118, 223, 587, 804, 1907
ApoI	RAATTY	1 cut(s)	1339
AseI	ATTAAT	1 cut(s)	1034
AsiGI	ACCGGT	2 cut(s)	1262, 1940
Asp700I	GAANNNNTTC	1 cut(s)	1342
Asp718I	GGTACC	1 cut(s)	1259
AspLEI	GCGC	7 cut(s)	102, 114, 245, 317, 373, 382, 484
AspS9I	GGNCC	4 cut(s)	286, 324, 1291, 1943
AsuC2I	CCSGG	2 cut(s)	290, 1854
AsuHPI	GGTGA	7 cut(s)	508, 672, 755, 1155, 1295, 1599, 1930
AvaI	CYCGRG	1 cut(s)	1147
AvaII	GGWCC	4 cut(s)	286, 324, 1291, 1943
BamHI	GGATCC	2 cut(s)	89, 1480
BanI	GGYRCC	5 cut(s)	209, 953, 1259, 1790, 1823
BanII	GRGCYC	3 cut(s)	75, 970, 1154
BauI	CACGAG	1 cut(s)	732
BbsI	GAAGAC	3 cut(s)	659, 1096, 1477
Bbv12I	GWGCWC	1 cut(s)	1154
BbvI	GCAGC	5 cut(s)	130, 235, 574, 816, 1919
BccI	CCATC	3 cut(s)	598, 847, 1624
BceAI	ACGGC	3 cut(s)	495, 648, 1427
BciT130I	CCWGG	4 cut(s)	106, 144, 1289, 1904
BciVI	GTATCC	1 cut(s)	865
BcnI	CCSGG	2 cut(s)	290, 1854
BcoDI	GTCTC	9 cut(s)	339, 416, 470, 533, 661, 716, 974, 1538, 1804
BfaI	CTAG	1 cut(s)	407
BfmI	CTRYAG	2 cut(s)	1116, 1737
BfoI	RGCGCY	2 cut(s)	103, 383
BfuAI	ACCTGC	1 cut(s)	475
BfuI	GTATCC	1 cut(s)	865
BisI	GCNGC	9 cut(s)	119, 190, 224, 266, 417, 511, 588, 805, 1908
BlsI	GCNGC	9 cut(s)	120, 191, 225, 267, 418, 512, 589, 806, 1909
Bme1390I	CCNGG	6 cut(s)	106, 144, 290, 1289, 1854, 1904
Bme18I	GGWCC	4 cut(s)	286, 324, 1291, 1943
BmeT110I	CYCGRG	1 cut(s)	1147
BmgBI	CACGTC	1 cut(s)	151
BmgT120I	GGNCC	4 cut(s)	286, 324, 1291, 1943
BmrFI	CCNGG	6 cut(s)	106, 144, 290, 1289, 1854, 1904
BmsI	GCATC	2 cut(s)	192, 1348
BpiI	GAAGAC	3 cut(s)	659, 1096, 1477
BpmI	CTGGAG	5 cut(s)	88, 126, 212, 643, 869
BpuEI	CTTGAG	1 cut(s)	1093
BpuMI	CCSGG	2 cut(s)	290, 1854
BsaBI	GATNNNNATC	1 cut(s)	254
BsaHI	GRCGYC	1 cut(s)	192
BsaI	GGTCTC	3 cut(s)	339, 416, 1538
BsaJI	CCNNGG	6 cut(s)	366, 1610, 1616, 1640, 1827, 1902
BsaWI	WCCGGW	5 cut(s)	321, 425, 1262, 1820, 1940
Bsc4I	CCNNNNNNNGG	6 cut(s)	121, 469, 924, 963, 1269, 1853
Bse118I	RCCGGY	4 cut(s)	239, 462, 1262, 1940
Bse1I	ACTGG	9 cut(s)	547, 683, 709, 873, 988, 1261, 1381, 1458, 1498
Bse8I	GATNNNNATC	1 cut(s)	254
BseBI	CCWGG	4 cut(s)	106, 144, 1289, 1904
BseDI	CCNNGG	6 cut(s)	366, 1610, 1616, 1640, 1827, 1902
BseGI	GGATG	2 cut(s)	705, 1597
BseJI	GATNNNNATC	1 cut(s)	254
BseLI	CCNNNNNNNGG	6 cut(s)	121, 469, 924, 963, 1269, 1853
BseMII	CTCAG	7 cut(s)	795, 1053, 1065, 1489, 1665, 1785, 1799
BseNI	ACTGG	9 cut(s)	547, 683, 709, 873, 988, 1261, 1381, 1458, 1498
BseRI	GAGGAG	3 cut(s)	49, 275, 1910
BseXI	GCAGC	5 cut(s)	130, 235, 574, 816, 1919
BseYI	CCCAGC	3 cut(s)	74, 311, 1213
Bsh1236I	CGCG	1 cut(s)	112
Bsh1285I	CGRYCG	1 cut(s)	1540
BshFI	GGCC	5 cut(s)	147, 236, 715, 1016, 1615
BshNI	GGYRCC	5 cut(s)	209, 953, 1259, 1790, 1823
BshTI	ACCGGT	2 cut(s)	1262, 1940
BsiEI	CGRYCG	1 cut(s)	1540
BsiHKAI	GWGCWC	1 cut(s)	1154
BsiHKCI	CYCGRG	1 cut(s)	1147
BslFI	GGGAC	5 cut(s)	1051, 1172, 1277, 1836, 1900
BslI	CCNNNNNNNGG	6 cut(s)	121, 469, 924, 963, 1269, 1853
BsmAI	GTCTC	9 cut(s)	339, 416, 470, 533, 661, 716, 974, 1538, 1804
BsmBI	CGTCTC	1 cut(s)	470
BsmFI	GGGAC	5 cut(s)	1051, 1172, 1277, 1836, 1900
BsmI	GAATGC	1 cut(s)	1928
BsnI	GGCC	5 cut(s)	147, 236, 715, 1016, 1615
Bso31I	GGTCTC	3 cut(s)	339, 416, 1538
BsoBI	CYCGRG	1 cut(s)	1147
Bsp1286I	GDGCHC	3 cut(s)	75, 970, 1154
Bsp1407I	TGTACA	2 cut(s)	1324, 1365
Bsp19I	CCATGG	1 cut(s)	1616
BspANI	GGCC	5 cut(s)	147, 236, 715, 1016, 1615
BspCNI	CTCAG	7 cut(s)	794, 1054, 1064, 1488, 1664, 1784, 1800
BspFNI	CGCG	1 cut(s)	112
BspHI	TCATGA	1 cut(s)	1949
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	8 cut(s)	84, 97, 866, 1015, 1475, 1488, 1575, 1701
BspQI	GCTCTTC	1 cut(s)	975
BspT107I	GGYRCC	5 cut(s)	209, 953, 1259, 1790, 1823
BspTNI	GGTCTC	3 cut(s)	339, 416, 1538
BsrBI	CCGCTC	1 cut(s)	130
BsrFI	RCCGGY	4 cut(s)	239, 462, 1262, 1940
BsrGI	TGTACA	2 cut(s)	1324, 1365
BsrI	ACTGG	9 cut(s)	547, 683, 709, 873, 988, 1261, 1381, 1458, 1498
BssAI	RCCGGY	4 cut(s)	239, 462, 1262, 1940
BssECI	CCNNGG	6 cut(s)	366, 1610, 1616, 1640, 1827, 1902
BssNAI	GTATAC	1 cut(s)	1268
BssNI	GRCGYC	1 cut(s)	192
BssSI	CACGAG	1 cut(s)	732
BssT1I	CCWWGG	5 cut(s)	366, 1610, 1616, 1640, 1827
Bst1107I	GTATAC	1 cut(s)	1268
Bst2BI	CACGAG	1 cut(s)	732
Bst2UI	CCWGG	4 cut(s)	106, 144, 1289, 1904
Bst4CI	ACNGT	6 cut(s)	136, 214, 727, 1042, 1411, 1738
Bst6I	CTCTTC	2 cut(s)	67, 975
BstACI	GRCGYC	1 cut(s)	192
BstAPI	GCANNNNNTGC	2 cut(s)	168, 650
BstAUI	TGTACA	2 cut(s)	1324, 1365
BstC8I	GCNNGC	7 cut(s)	116, 123, 164, 234, 1080, 1126, 1177
BstDEI	CTNAG	9 cut(s)	79, 781, 1051, 1062, 1306, 1475, 1651, 1771, 1808
BstDSI	CCRYGG	1 cut(s)	1616
BstEII	GGTNACC	2 cut(s)	1161, 1283
BstF5I	GGATG	2 cut(s)	705, 1597
BstFNI	CGCG	1 cut(s)	112
BstH2I	RGCGCY	2 cut(s)	103, 383
BstHHI	GCGC	7 cut(s)	102, 114, 245, 317, 373, 382, 484
BstMAI	GTCTC	9 cut(s)	339, 416, 470, 533, 661, 716, 974, 1538, 1804
BstMCI	CGRYCG	1 cut(s)	1540
BstNI	CCWGG	4 cut(s)	106, 144, 1289, 1904
BstNSI	RCATGY	1 cut(s)	166
BstPI	GGTNACC	2 cut(s)	1161, 1283
BstSCI	CCNGG	6 cut(s)	104, 142, 288, 1287, 1852, 1902
BstSFI	CTRYAG	2 cut(s)	1116, 1737
BstUI	CGCG	1 cut(s)	112
BstV1I	GCAGC	5 cut(s)	130, 235, 574, 816, 1919
BstV2I	GAAGAC	3 cut(s)	659, 1096, 1477
BstX2I	RGATCY	5 cut(s)	89, 858, 1007, 1480, 1693
BstXI	CCANNNNNNTGG	2 cut(s)	334, 1617
BstYI	RGATCY	5 cut(s)	89, 858, 1007, 1480, 1693
BstZ17I	GTATAC	1 cut(s)	1268
BsuI	GTATCC	1 cut(s)	865
BsuRI	GGCC	5 cut(s)	147, 236, 715, 1016, 1615
BtgI	CCRYGG	1 cut(s)	1616
BtgZI	GCGATG	1 cut(s)	289
BtrI	CACGTC	1 cut(s)	151
BtsCI	GGATG	2 cut(s)	705, 1597
BtsI	GCAGTG	1 cut(s)	1708
BtsIMutI	CAGTG	6 cut(s)	132, 346, 789, 866, 1708, 1779
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	7 cut(s)	116, 123, 164, 234, 1080, 1126, 1177
CaiI	CAGNNNCTG	1 cut(s)	1658
CciI	TCATGA	1 cut(s)	1949
CfoI	GCGC	7 cut(s)	102, 114, 245, 317, 373, 382, 484
Cfr10I	RCCGGY	4 cut(s)	239, 462, 1262, 1940
Cfr13I	GGNCC	4 cut(s)	286, 324, 1291, 1943
CpoI	CGGWCCG	1 cut(s)	286
CseI	GACGC	1 cut(s)	181
CsiI	ACCWGGT	1 cut(s)	1287
Csp6I	GTAC	4 cut(s)	1260, 1325, 1366, 1777
CspAI	ACCGGT	2 cut(s)	1262, 1940
CspI	CGGWCCG	1 cut(s)	286
CviAII	CATG	5 cut(s)	163, 811, 1617, 1841, 1950
CviQI	GTAC	4 cut(s)	1260, 1325, 1366, 1777
DdeI	CTNAG	9 cut(s)	79, 781, 1051, 1062, 1306, 1475, 1651, 1771, 1808
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
EaeI	YGGCCR	1 cut(s)	1014
Eam1104I	CTCTTC	2 cut(s)	67, 975
EarI	CTCTTC	2 cut(s)	67, 975
EciI	GGCGGA	3 cut(s)	434, 488, 825
Ecl136II	GAGCTC	1 cut(s)	1152
Eco130I	CCWWGG	5 cut(s)	366, 1610, 1616, 1640, 1827
Eco147I	AGGCCT	1 cut(s)	715
Eco24I	GRGCYC	3 cut(s)	75, 970, 1154
Eco31I	GGTCTC	3 cut(s)	339, 416, 1538
Eco47I	GGWCC	4 cut(s)	286, 324, 1291, 1943
Eco47III	AGCGCT	1 cut(s)	101
Eco53kI	GAGCTC	1 cut(s)	1152
Eco57I	CTGAAG	2 cut(s)	807, 956
Eco88I	CYCGRG	1 cut(s)	1147
Eco91I	GGTNACC	2 cut(s)	1161, 1283
EcoICRI	GAGCTC	1 cut(s)	1152
EcoO109I	RGGNCCY	1 cut(s)	1291
EcoO65I	GGTNACC	2 cut(s)	1161, 1283
EcoRII	CCWGG	4 cut(s)	104, 142, 1287, 1902
EcoT14I	CCWWGG	5 cut(s)	366, 1610, 1616, 1640, 1827
EcoT38I	GRGCYC	3 cut(s)	75, 970, 1154
ErhI	CCWWGG	5 cut(s)	366, 1610, 1616, 1640, 1827
Esp3I	CGTCTC	1 cut(s)	470
FaeI	CATG	5 cut(s)	166, 814, 1620, 1844, 1953
FalI	AAGNNNNNCTT	4 cut(s)	366, 398, 1289, 1321
FaqI	GGGAC	5 cut(s)	1051, 1172, 1277, 1836, 1900
FatI	CATG	5 cut(s)	162, 810, 1616, 1840, 1949
FauI	CCCGC	2 cut(s)	188, 1076
FblI	GTMKAC	2 cut(s)	1267, 1540
Fnu4HI	GCNGC	9 cut(s)	119, 190, 224, 266, 417, 511, 588, 805, 1908
FokI	GGATG	2 cut(s)	712, 1584
FriOI	GRGCYC	3 cut(s)	75, 970, 1154
Fsp4HI	GCNGC	9 cut(s)	119, 190, 224, 266, 417, 511, 588, 805, 1908
FspBI	CTAG	1 cut(s)	407
GlaI	GCGC	7 cut(s)	101, 113, 244, 316, 372, 381, 483
GluI	GCNGC	9 cut(s)	119, 190, 224, 266, 417, 511, 588, 805, 1908
GsaI	CCCAGC	3 cut(s)	78, 315, 1217
GsuI	CTGGAG	5 cut(s)	88, 126, 212, 643, 869
HaeII	RGCGCY	2 cut(s)	103, 383
HaeIII	GGCC	5 cut(s)	147, 236, 715, 1016, 1615
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	7 cut(s)	102, 114, 245, 317, 373, 382, 484
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	5 cut(s)	166, 814, 1620, 1844, 1953
Hin6I	GCGC	7 cut(s)	100, 112, 243, 315, 371, 380, 482
HinP1I	GCGC	7 cut(s)	100, 112, 243, 315, 371, 380, 482
HincII	GTYRAC	2 cut(s)	688, 1541
HindII	GTYRAC	2 cut(s)	688, 1541
HphI	GGTGA	7 cut(s)	508, 672, 755, 1155, 1295, 1599, 1930
Hpy166II	GTNNAC	5 cut(s)	680, 688, 1268, 1541, 1777
Hpy188I	TCNGA	9 cut(s)	70, 254, 598, 975, 1054, 1240, 1248, 1654, 1693
Hpy8I	GTNNAC	5 cut(s)	680, 688, 1268, 1541, 1777
Hpy99I	CGWCG	2 cut(s)	155, 299
HpyAV	CCTTC	7 cut(s)	166, 603, 611, 1243, 1419, 1515, 1611
HpyCH4III	ACNGT	6 cut(s)	136, 214, 727, 1042, 1411, 1738
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	3 cut(s)	1175, 1354, 1840
HpyF3I	CTNAG	9 cut(s)	79, 781, 1051, 1062, 1306, 1475, 1651, 1771, 1808
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	5 cut(s)	166, 814, 1620, 1844, 1953
HspAI	GCGC	7 cut(s)	100, 112, 243, 315, 371, 380, 482
KpnI	GGTACC	1 cut(s)	1263
LguI	GCTCTTC	1 cut(s)	975
Lsp1109I	GCAGC	5 cut(s)	130, 235, 574, 816, 1919
LweI	GCATC	2 cut(s)	192, 1348
MabI	ACCWGGT	1 cut(s)	1287
MaeI	CTAG	1 cut(s)	407
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	8 cut(s)	895, 1042, 1161, 1252, 1283, 1383, 1522, 1723
MbiI	CCGCTC	1 cut(s)	130
MboII	GAAGA	9 cut(s)	36, 54, 538, 659, 962, 1096, 1482, 1500, 1596
MflI	RGATCY	5 cut(s)	89, 858, 1007, 1480, 1693
MhlI	GDGCHC	3 cut(s)	75, 970, 1154
MluCI	AATT	9 cut(s)	39, 552, 572, 793, 1035, 1339, 1417, 1588, 1795
MlyI	GAGTC	4 cut(s)	272, 1073, 1139, 1467
MmeI	TCCRAC	3 cut(s)	427, 982, 1428
MroXI	GAANNNNTTC	1 cut(s)	1342
MseI	TTAA	3 cut(s)	903, 1034, 1680
MspR9I	CCNGG	6 cut(s)	106, 144, 290, 1289, 1854, 1904
Mva1269I	GAATGC	1 cut(s)	1928
MvaI	CCWGG	4 cut(s)	106, 144, 1289, 1904
MvnI	CGCG	1 cut(s)	112
NciI	CCSGG	2 cut(s)	290, 1854
NcoI	CCATGG	1 cut(s)	1616
NlaIII	CATG	5 cut(s)	166, 814, 1620, 1844, 1953
NmeAIII	GCCGAG	2 cut(s)	825, 1042
NmuCI	GTSAC	3 cut(s)	1161, 1283, 1723
NspI	RCATGY	1 cut(s)	166
PaeI	GCATGC	1 cut(s)	166
PaeR7I	CTCGAG	1 cut(s)	1147
PagI	TCATGA	1 cut(s)	1949
PceI	AGGCCT	1 cut(s)	715
PciSI	GCTCTTC	1 cut(s)	975
PctI	GAATGC	1 cut(s)	1928
PdmI	GAANNNNTTC	1 cut(s)	1342
PfeI	GAWTC	6 cut(s)	255, 403, 907, 1057, 1243, 1647
PflFI	GACNNNGTC	3 cut(s)	52, 290, 1289
PfoI	TCCNGGA	1 cut(s)	1852
PinAI	ACCGGT	2 cut(s)	1262, 1940
PkrI	GCNGC	9 cut(s)	120, 191, 225, 267, 418, 512, 589, 806, 1909
PleI	GAGTC	4 cut(s)	272, 1072, 1139, 1467
PpsI	GAGTC	4 cut(s)	272, 1072, 1139, 1467
PpuMI	RGGWCCY	1 cut(s)	1291
PshBI	ATTAAT	1 cut(s)	1034
Psp124BI	GAGCTC	1 cut(s)	1154
Psp5II	RGGWCCY	1 cut(s)	1291
Psp6I	CCWGG	4 cut(s)	104, 142, 1287, 1902
PspEI	GGTNACC	2 cut(s)	1161, 1283
PspFI	CCCAGC	3 cut(s)	74, 311, 1213
PspGI	CCWGG	4 cut(s)	104, 142, 1287, 1902
PspPI	GGNCC	4 cut(s)	286, 324, 1291, 1943
PspPPI	RGGWCCY	1 cut(s)	1291
PspXI	VCTCGAGB	1 cut(s)	1147
PstNI	CAGNNNCTG	1 cut(s)	1658
PsuI	RGATCY	5 cut(s)	89, 858, 1007, 1480, 1693
PsyI	GACNNNGTC	3 cut(s)	52, 290, 1289
RsaI	GTAC	4 cut(s)	1261, 1326, 1367, 1778
RsaNI	GTAC	4 cut(s)	1260, 1325, 1366, 1777
Rsr2I	CGGWCCG	1 cut(s)	286
RsrII	CGGWCCG	1 cut(s)	286
SacI	GAGCTC	1 cut(s)	1154
SalI	GTCGAC	1 cut(s)	1539
SapI	GCTCTTC	1 cut(s)	975
SaqAI	TTAA	3 cut(s)	903, 1034, 1680
SatI	GCNGC	9 cut(s)	119, 190, 224, 266, 417, 511, 588, 805, 1908
Sau96I	GGNCC	4 cut(s)	286, 324, 1291, 1943
SchI	GAGTC	4 cut(s)	272, 1073, 1139, 1467
ScrFI	CCNGG	6 cut(s)	106, 144, 290, 1289, 1854, 1904
SduI	GDGCHC	3 cut(s)	75, 970, 1154
SexAI	ACCWGGT	1 cut(s)	1287
SfaNI	GCATC	2 cut(s)	192, 1348
SfcI	CTRYAG	2 cut(s)	1116, 1737
Sfr274I	CTCGAG	1 cut(s)	1147
SgrAI	CRCCGGYG	1 cut(s)	239
SinI	GGWCC	4 cut(s)	286, 324, 1291, 1943
SlaI	CTCGAG	1 cut(s)	1147
SmlI	CTYRAG	2 cut(s)	1108, 1147
SmoI	CTYRAG	2 cut(s)	1108, 1147
SphI	GCATGC	1 cut(s)	166
Sse9I	AATT	9 cut(s)	39, 552, 572, 793, 1035, 1339, 1417, 1588, 1795
SseBI	AGGCCT	1 cut(s)	715
SspI	AATATT	1 cut(s)	1372
SspMI	CTAG	1 cut(s)	407
SstI	GAGCTC	1 cut(s)	1154
StuI	AGGCCT	1 cut(s)	715
StyD4I	CCNGG	6 cut(s)	104, 142, 288, 1287, 1852, 1902
StyI	CCWWGG	5 cut(s)	366, 1610, 1616, 1640, 1827
TaaI	ACNGT	6 cut(s)	136, 214, 727, 1042, 1411, 1738
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	7 cut(s)	47, 258, 276, 396, 1148, 1540, 1804
TaqII	GACCGA	1 cut(s)	1526
TasI	AATT	9 cut(s)	39, 552, 572, 793, 1035, 1339, 1417, 1588, 1795
TatI	WGTACW	2 cut(s)	1324, 1365
TauI	GCSGC	4 cut(s)	192, 268, 419, 513
TfiI	GAWTC	6 cut(s)	255, 403, 907, 1057, 1243, 1647
Tru1I	TTAA	3 cut(s)	903, 1034, 1680
Tru9I	TTAA	3 cut(s)	903, 1034, 1680
TscAI	CASTG	6 cut(s)	139, 346, 789, 873, 1708, 1779
TseFI	GTSAC	3 cut(s)	1161, 1283, 1723
TseI	GCWGC	5 cut(s)	118, 223, 587, 804, 1907
Tsp45I	GTSAC	3 cut(s)	1161, 1283, 1723
TspDTI	ATGAA	4 cut(s)	1041, 1500, 1857, 1921
TspGWI	ACGGA	3 cut(s)	102, 1285, 1794
TspRI	CASTG	6 cut(s)	139, 346, 789, 873, 1708, 1779
Tth111I	GACNNNGTC	3 cut(s)	52, 290, 1289
VpaK11BI	GGWCC	4 cut(s)	286, 324, 1291, 1943
VspI	ATTAAT	1 cut(s)	1034
XapI	RAATTY	1 cut(s)	1339
XbaI	TCTAGA	1 cut(s)	406
XceI	RCATGY	1 cut(s)	166
XhoI	CTCGAG	1 cut(s)	1147
XmiI	GTMKAC	2 cut(s)	1267, 1540
XmnI	GAANNNNTTC	1 cut(s)	1342
XspI	CTAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.