Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002957

Physical Location & Seq

Genomic Coordinates Reverse (-)

7679509 .. 7680174

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0056000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGATACGGGACTATGTACAGGCAGCTAGTGATATCCAAAGACTTATATCTATACTGGAAAAGCAAGCTGATGAAAAGGCCAAAGAGTCTACCTCAGAAGGCTCTTCCAATGCCTGTGCAAAAAAATTACAGCAGGCTCGTCGACGTTTGCCATCAATGAAAGAAAAAGCTAAGAAAGGAATCCCCATGGATTTAAACCTCATTTTGGGGATTAAACCATCTGACACAAGTTCTCCTATCAAGAAGGCATACCGCATGGCAGCTCTCAAACATCATCCTGACAAGGCTGGCCAGTTCTTGGGAAGAAATGGGAGTCAAGATGAAGGGCGACTGTGGAAGGAAATCTCTGTCGAGGTTCAGAAAGATGCTGACAGGATGTTTAAAATGATTGGAGAGGCATATGAAGTACTATCAGACCCAAGCAAGCGCTCAAAATATGATCTCGAGGAGTATATGAGAAAAGCAGCAAATGAAAGAAAGGAAAAAAGCAGTCAAAGAAAACCTTCAGATTTCCAGAGTCCTAATCAAACCAGCAGTTGTAGAAAACATTCATACTTTAATGAGTGTCCAAGCAGACCCAGCAGTTATAGAAGATCTGGTTTTTATAGGTCCCCCTTCGAGAGAACATGTCCGGATGAAAGGGAAAGTTGGAAGTCATATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009909 GO:0009911 GO:0016604 GO:0016607 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0070013 GO:0090567 GO:0090700 GO:0099402 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

221

Amino Acids

25.42

Weight (kDa)

9.6

Isoelectric Point (pI)

61.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	68 - 147	1.4e-14	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64390 AT5G64390 AT5G64390
fragaria_vesca	FvH4_2g11560 FvH4_2g11560 FvH4_2g11560
malus_domestica	MD05G1048400.v1.1 MD10G1054800.v1.1
prunus_persica	Prupe.8G070900_v2.0.a1
pyrus_communis	pycom05g04000 pycom10g04180
rosa_chinensis	RchiOBHm_Chr1g0353311 RchiOBHm_Chr4g0385021 RchiOBHm_Chr6g0270731 RchiOBHm_Chr6g0272811
rosa_laevigata	RLG00000013774
rosa_multiflora	Rmu_co8284529.1_g000001 Rmu_sc0000642.1_g000012 Rmu_sc0041041.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085770 Rroxscaffold_7G00197640
rosa_rugosa	Rorug06G0056000 Rorug06G0056100 Rorug06G0056200
rosa_samantha	Rh2DG204000 Rh4CG002400 Rh4CG168900 Rh6AG157400 Rh6AG175200 Rh6BG140200 Rh6BG178600 Rh6CG174800 Rh6DG123600 Rh6DG167400 Rh6DG180500 Rh7AG209600 Rh7CG359700
rosa_wichuraiana	Rw6G014930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	298
AccI	GTMKAC	2 cut(s)	89, 142
AccIII	TCCGGA	1 cut(s)	631
AciI	CCGC	1 cut(s)	253
AcoI	YGGCCR	1 cut(s)	289
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	2 cut(s)	18, 408
AfeI	AGCGCT	1 cut(s)	428
AfiI	CCNNNNNNNGG	2 cut(s)	205, 298
AflIII	ACRYGT	1 cut(s)	626
AluBI	AGCT	4 cut(s)	26, 68, 170, 263
AluI	AGCT	4 cut(s)	26, 68, 170, 263
Ama87I	CYCGRG	1 cut(s)	443
Aor13HI	TCCGGA	1 cut(s)	631
Aor51HI	AGCGCT	1 cut(s)	428
AoxI	GGCC	2 cut(s)	78, 289
ApeKI	GCWGC	3 cut(s)	23, 260, 464
Asp700I	GAANNNNTTC	2 cut(s)	502, 547
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	1 cut(s)	609
AvaI	CYCGRG	1 cut(s)	443
AvaII	GGWCC	1 cut(s)	609
BalI	TGGCCA	1 cut(s)	291
BbvI	GCAGC	3 cut(s)	35, 272, 476
BccI	CCATC	2 cut(s)	160, 226
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BfaI	CTAG	1 cut(s)	27
BfoI	RGCGCY	1 cut(s)	430
BglII	AGATCT	1 cut(s)	593
BisI	GCNGC	3 cut(s)	24, 261, 465
BlsI	GCNGC	3 cut(s)	25, 262, 466
BmcAI	AGTACT	1 cut(s)	408
Bme18I	GGWCC	1 cut(s)	609
BmeT110I	CYCGRG	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	609
BmiI	GGNNCC	1 cut(s)	611
BmsI	GCATC	1 cut(s)	355
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
BsaJI	CCNNGG	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	631
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 298
Bse1I	ACTGG	2 cut(s)	60, 292
BseAI	TCCGGA	1 cut(s)	631
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	3 cut(s)	274, 381, 640
BseLI	CCNNNNNNNGG	2 cut(s)	205, 298
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	2 cut(s)	60, 292
BseRI	GAGGAG	1 cut(s)	461
BseXI	GCAGC	3 cut(s)	35, 272, 476
BseYI	CCCAGC	1 cut(s)	578
BshFI	GGCC	2 cut(s)	80, 291
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	1 cut(s)	632
BslFI	GGGAC	2 cut(s)	23, 595
BslI	CCNNNNNNNGG	2 cut(s)	205, 298
BsmFI	GGGAC	2 cut(s)	23, 595
BsnI	GGCC	2 cut(s)	80, 291
BsoBI	CYCGRG	1 cut(s)	443
Bsp13I	TCCGGA	1 cut(s)	631
Bsp1407I	TGTACA	1 cut(s)	16
Bsp143I	GATC	2 cut(s)	439, 593
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	1 cut(s)	253
BspANI	GGCC	2 cut(s)	80, 291
BspCNI	CTCAG	1 cut(s)	107
BspEI	TCCGGA	1 cut(s)	631
BspLI	GGNNCC	1 cut(s)	611
BspQI	GCTCTTC	1 cut(s)	109
BsrGI	TGTACA	1 cut(s)	16
BsrI	ACTGG	2 cut(s)	60, 292
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	2 cut(s)	439, 593
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	333
Bst6I	CTCTTC	1 cut(s)	109
BstAUI	TGTACA	1 cut(s)	16
BstC8I	GCNNGC	4 cut(s)	66, 135, 289, 425
BstDEI	CTNAG	2 cut(s)	94, 171
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	3 cut(s)	274, 381, 640
BstH2I	RGCGCY	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	2 cut(s)	442, 596
BstMBI	GATC	2 cut(s)	439, 593
BstMWI	GCNNNNNNNGC	1 cut(s)	579
BstNSI	RCATGY	1 cut(s)	630
BstV1I	GCAGC	3 cut(s)	35, 272, 476
BstX2I	RGATCY	1 cut(s)	593
BstYI	RGATCY	1 cut(s)	593
BsuRI	GGCC	2 cut(s)	80, 291
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	3 cut(s)	274, 381, 640
Cac8I	GCNNGC	4 cut(s)	66, 135, 289, 425
CfoI	GCGC	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	609
Csp6I	GTAC	2 cut(s)	17, 407
CviAII	CATG	3 cut(s)	187, 256, 627
CviQI	GTAC	2 cut(s)	17, 407
DdeI	CTNAG	2 cut(s)	94, 171
DpnI	GATC	2 cut(s)	441, 595
DpnII	GATC	2 cut(s)	439, 593
DraI	TTTAAA	2 cut(s)	195, 382
EaeI	YGGCCR	1 cut(s)	289
Eam1104I	CTCTTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	186
Eco32I	GATATC	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	609
Eco47III	AGCGCT	1 cut(s)	428
Eco57I	CTGAAG	1 cut(s)	489
Eco88I	CYCGRG	1 cut(s)	443
EcoO109I	RGGNCCY	1 cut(s)	609
EcoRV	GATATC	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	3 cut(s)	190, 259, 630
FalI	AAGNNNNNCTT	2 cut(s)	487, 519
FaqI	GGGAC	2 cut(s)	23, 595
FatI	CATG	3 cut(s)	186, 255, 626
FauNDI	CATATG	2 cut(s)	400, 658
FblI	GTMKAC	2 cut(s)	89, 142
Fnu4HI	GCNGC	3 cut(s)	24, 261, 465
FokI	GGATG	3 cut(s)	261, 388, 647
Fsp4HI	GCNGC	3 cut(s)	24, 261, 465
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	3 cut(s)	24, 261, 465
GsaI	CCCAGC	1 cut(s)	582
HaeII	RGCGCY	1 cut(s)	430
HaeIII	GGCC	2 cut(s)	80, 291
HapII	CCGG	1 cut(s)	632
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	3 cut(s)	190, 259, 630
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HincII	GTYRAC	1 cut(s)	143
HindII	GTYRAC	1 cut(s)	143
HinfI	GANTC	4 cut(s)	86, 180, 313, 517
HpaII	CCGG	1 cut(s)	632
Hpy166II	GTNNAC	2 cut(s)	90, 143
Hpy188I	TCNGA	5 cut(s)	97, 223, 360, 415, 508
Hpy188III	TCNNGA	7 cut(s)	241, 278, 317, 443, 514, 619, 632
Hpy8I	GTNNAC	2 cut(s)	90, 143
Hpy99I	CGWCG	2 cut(s)	144, 147
HpyAV	CCTTC	6 cut(s)	92, 238, 317, 331, 513, 625
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	1 cut(s)	119
HpyF10VI	GCNNNNNNNGC	1 cut(s)	579
HpyF3I	CTNAG	2 cut(s)	94, 171
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	3 cut(s)	190, 259, 630
HspAI	GCGC	1 cut(s)	427
Kpn2I	TCCGGA	1 cut(s)	631
Kzo9I	GATC	2 cut(s)	439, 593
LguI	GCTCTTC	1 cut(s)	109
Lsp1109I	GCAGC	3 cut(s)	35, 272, 476
LweI	GCATC	1 cut(s)	355
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	1 cut(s)	145
MalI	GATC	2 cut(s)	441, 595
MboI	GATC	2 cut(s)	439, 593
MboII	GAAGA	3 cut(s)	96, 315, 603
MflI	RGATCY	1 cut(s)	593
MlsI	TGGCCA	1 cut(s)	291
MluCI	AATT	1 cut(s)	125
MluNI	TGGCCA	1 cut(s)	291
MlyI	GAGTC	3 cut(s)	95, 322, 526
MmeI	TCCRAC	1 cut(s)	629
MnlI	CCTC	5 cut(s)	103, 209, 346, 388, 439
Mox20I	TGGCCA	1 cut(s)	291
MroI	TCCGGA	1 cut(s)	631
MroXI	GAANNNNTTC	2 cut(s)	502, 547
MscI	TGGCCA	1 cut(s)	291
MseI	TTAA	4 cut(s)	194, 213, 381, 558
Msp20I	TGGCCA	1 cut(s)	291
MspI	CCGG	1 cut(s)	632
MwoI	GCNNNNNNNGC	1 cut(s)	579
NcoI	CCATGG	1 cut(s)	186
NdeI	CATATG	2 cut(s)	400, 658
NdeII	GATC	2 cut(s)	439, 593
NlaIII	CATG	3 cut(s)	190, 259, 630
NlaIV	GGNNCC	1 cut(s)	611
NspI	RCATGY	1 cut(s)	630
PaeR7I	CTCGAG	1 cut(s)	443
PciI	ACATGT	1 cut(s)	626
PciSI	GCTCTTC	1 cut(s)	109
PdmI	GAANNNNTTC	2 cut(s)	502, 547
PfeI	GAWTC	1 cut(s)	180
PflMI	CCANNNNNTGG	1 cut(s)	298
PkrI	GCNGC	3 cut(s)	25, 262, 466
PleI	GAGTC	3 cut(s)	94, 321, 525
PpsI	GAGTC	3 cut(s)	94, 321, 525
PpuMI	RGGWCCY	1 cut(s)	609
PscI	ACATGT	1 cut(s)	626
Psp5II	RGGWCCY	1 cut(s)	609
PspFI	CCCAGC	1 cut(s)	578
PspN4I	GGNNCC	1 cut(s)	611
PspPI	GGNCC	1 cut(s)	609
PspPPI	RGGWCCY	1 cut(s)	609
PsuI	RGATCY	1 cut(s)	593
RsaI	GTAC	2 cut(s)	18, 408
RsaNI	GTAC	2 cut(s)	17, 407
SalI	GTCGAC	1 cut(s)	141
SapI	GCTCTTC	1 cut(s)	109
SaqAI	TTAA	4 cut(s)	194, 213, 381, 558
SatI	GCNGC	3 cut(s)	24, 261, 465
Sau3AI	GATC	2 cut(s)	439, 593
Sau96I	GGNCC	1 cut(s)	609
ScaI	AGTACT	1 cut(s)	408
SchI	GAGTC	3 cut(s)	95, 322, 526
SfaNI	GCATC	1 cut(s)	355
Sfr274I	CTCGAG	1 cut(s)	443
SgrDI	CGTCGACG	1 cut(s)	141
SinI	GGWCC	1 cut(s)	609
SlaI	CTCGAG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	1 cut(s)	125
SsiI	CCGC	1 cut(s)	253
SspMI	CTAG	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	333
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	4 cut(s)	142, 351, 444, 618
TasI	AATT	1 cut(s)	125
TatI	WGTACW	2 cut(s)	16, 406
TfiI	GAWTC	1 cut(s)	180
Tru1I	TTAA	4 cut(s)	194, 213, 381, 558
Tru9I	TTAA	4 cut(s)	194, 213, 381, 558
TseI	GCWGC	3 cut(s)	23, 260, 464
TspDTI	ATGAA	7 cut(s)	87, 173, 336, 417, 486, 540, 651
Van91I	CCANNNNNTGG	1 cut(s)	298
VpaK11BI	GGWCC	1 cut(s)	609
XceI	RCATGY	1 cut(s)	630
XhoI	CTCGAG	1 cut(s)	443
XmiI	GTMKAC	2 cut(s)	89, 142
XmnI	GAANNNNTTC	2 cut(s)	502, 547
XspI	CTAG	1 cut(s)	27
ZrmI	AGTACT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.