Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002957

Physical Location & Seq

Genomic Coordinates Forward (+)

7686574 .. 7689630

Gene Structure 3057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0056200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAAAGCCGTTGCCTTAAAACCTTCGCTAGGAAGAACCTTGTACACCAAGTGGAAATTATCTGGGGCATTCAAATCAAACTCGAATAGAACTGTGGATCTTGAAGCGTGGTATCAGGCCTATAGGCCTCGTTTTAATCATGAGTATACGATTGCTTTACGAGATCCTATTGCAAGTGTTATGGAGGTTTTTGAGGCCAATTCTCACAAATGGCGCATGGAATCATTTAGACAACGAATAGATCGACCAAACCCTCGTGCTGAGCTAGGTTGGTCAGGTTGGTGGTTTGAGGAGGACCACCCTGAGCTTGAACCTATTGAGAAGGAAATTAATGGAGGCATTATGTCCGCAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009909 GO:0009911 GO:0016604 GO:0016607 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0070013 GO:0090567 GO:0090700 GO:0099402 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

118

Amino Acids

13.84

Weight (kDa)

8.03

Isoelectric Point (pI)

28.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64390 AT5G64390 AT5G64390
fragaria_vesca	FvH4_2g11560 FvH4_2g11560 FvH4_2g11560
malus_domestica	MD05G1048400.v1.1 MD10G1054800.v1.1
prunus_persica	Prupe.8G070900_v2.0.a1
pyrus_communis	pycom05g04000 pycom10g04180
rosa_chinensis	RchiOBHm_Chr1g0353311 RchiOBHm_Chr4g0385021 RchiOBHm_Chr6g0270731 RchiOBHm_Chr6g0272811
rosa_laevigata	RLG00000013774
rosa_multiflora	Rmu_co8284529.1_g000001 Rmu_sc0000642.1_g000012 Rmu_sc0041041.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085770 Rroxscaffold_7G00197640
rosa_rugosa	Rorug06G0056000 Rorug06G0056100 Rorug06G0056200
rosa_samantha	Rh2DG204000 Rh4CG002400 Rh4CG168900 Rh6AG157400 Rh6AG175200 Rh6BG140200 Rh6BG178600 Rh6CG174800 Rh6DG123600 Rh6DG167400 Rh6DG180500 Rh7AG209600 Rh7CG359700
rosa_wichuraiana	Rw6G014930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	146
AciI	CCGC	1 cut(s)	348
AclWI	GGATC	2 cut(s)	105, 158
AdeI	CACNNNGTG	1 cut(s)	51
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	3 cut(s)	73, 104, 311
AluBI	AGCT	2 cut(s)	265, 307
AluI	AGCT	2 cut(s)	265, 307
AlwI	GGATC	2 cut(s)	105, 158
AoxI	GGCC	3 cut(s)	117, 125, 195
ApeKI	GCWGC	1 cut(s)	350
AseI	ATTAAT	1 cut(s)	330
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	295
AvaII	GGWCC	1 cut(s)	295
BauI	CACGAG	1 cut(s)	255
BfaI	CTAG	3 cut(s)	29, 266, 355
BfmI	CTRYAG	1 cut(s)	121
BisI	GCNGC	1 cut(s)	351
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	352
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	295
Bpu10I	CCTNAGC	1 cut(s)	303
Bpu1102I	GCTNAGC	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMII	CTCAG	2 cut(s)	252, 294
BseRI	GAGGAG	1 cut(s)	305
BshFI	GGCC	3 cut(s)	119, 127, 197
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	3 cut(s)	119, 127, 197
Bsp1407I	TGTACA	1 cut(s)	42
Bsp143I	GATC	3 cut(s)	97, 163, 241
Bsp1720I	GCTNAGC	1 cut(s)	261
BspACI	CCGC	1 cut(s)	348
BspANI	GGCC	3 cut(s)	119, 127, 197
BspCNI	CTCAG	2 cut(s)	253, 295
BspHI	TCATGA	1 cut(s)	139
BspPI	GGATC	2 cut(s)	105, 158
BsrGI	TGTACA	1 cut(s)	42
BssMI	GATC	3 cut(s)	97, 163, 241
BssNAI	GTATAC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	255
Bst1107I	GTATAC	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	94
BstAUI	TGTACA	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	261, 303
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	3 cut(s)	100, 166, 244
BstMBI	GATC	3 cut(s)	97, 163, 241
BstSFI	CTRYAG	1 cut(s)	121
BstX2I	RGATCY	2 cut(s)	97, 163
BstYI	RGATCY	2 cut(s)	97, 163
BstZ17I	GTATAC	1 cut(s)	147
BsuRI	GGCC	3 cut(s)	119, 127, 197
CciI	TCATGA	1 cut(s)	139
CfoI	GCGC	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	2 cut(s)	140, 217
CviJI	RGCY	7 cut(s)	8, 119, 127, 197, 265, 307, 353
CviKI_1	RGCY	7 cut(s)	8, 119, 127, 197, 265, 307, 353
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	2 cut(s)	261, 303
DpnI	GATC	3 cut(s)	99, 165, 243
DpnII	GATC	3 cut(s)	97, 163, 241
DraIII	CACNNNGTG	1 cut(s)	51
Eco147I	AGGCCT	2 cut(s)	119, 127
Eco47I	GGWCC	1 cut(s)	295
EcoNI	CCTNNNNNAGG	1 cut(s)	27
FaeI	CATG	2 cut(s)	143, 220
FaiI	YATR	6 cut(s)	123, 141, 147, 182, 218, 344
FatI	CATG	2 cut(s)	139, 216
FblI	GTMKAC	1 cut(s)	146
Fnu4HI	GCNGC	1 cut(s)	351
Fsp4HI	GCNGC	1 cut(s)	351
FspBI	CTAG	3 cut(s)	29, 266, 355
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	1 cut(s)	351
HaeIII	GGCC	3 cut(s)	119, 127, 197
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	143, 220
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HinfI	GANTC	1 cut(s)	221
Hpy166II	GTNNAC	2 cut(s)	45, 147
Hpy188III	TCNNGA	2 cut(s)	101, 140
Hpy8I	GTNNAC	2 cut(s)	45, 147
HpyAV	CCTTC	2 cut(s)	33, 316
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	1 cut(s)	173
HpyF3I	CTNAG	2 cut(s)	261, 303
Hsp92II	CATG	2 cut(s)	143, 220
HspAI	GCGC	1 cut(s)	214
Kzo9I	GATC	3 cut(s)	97, 163, 241
LpnPI	CCDG	4 cut(s)	48, 101, 261, 315
MaeI	CTAG	3 cut(s)	29, 266, 355
MalI	GATC	3 cut(s)	99, 165, 243
MboI	GATC	3 cut(s)	97, 163, 241
MboII	GAAGA	1 cut(s)	45
MflI	RGATCY	2 cut(s)	97, 163
MluCI	AATT	3 cut(s)	56, 199, 327
MnlI	CCTC	7 cut(s)	138, 178, 187, 264, 283, 286, 329
MseI	TTAA	3 cut(s)	17, 135, 330
Mva1269I	GAATGC	1 cut(s)	68
NdeII	GATC	3 cut(s)	97, 163, 241
NlaIII	CATG	2 cut(s)	143, 220
PagI	TCATGA	1 cut(s)	139
PceI	AGGCCT	2 cut(s)	119, 127
PcsI	WCGNNNNNNNCGW	1 cut(s)	241
PctI	GAATGC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	352
PshBI	ATTAAT	1 cut(s)	330
PspPI	GGNCC	1 cut(s)	295
PsuI	RGATCY	2 cut(s)	97, 163
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
SaqAI	TTAA	3 cut(s)	17, 135, 330
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	3 cut(s)	97, 163, 241
Sau96I	GGNCC	1 cut(s)	295
SetI	ASST	8 cut(s)	25, 41, 189, 267, 271, 280, 309, 316
SfcI	CTRYAG	1 cut(s)	121
SinI	GGWCC	1 cut(s)	295
Sse9I	AATT	3 cut(s)	56, 199, 327
SseBI	AGGCCT	2 cut(s)	119, 127
SsiI	CCGC	1 cut(s)	348
SspMI	CTAG	3 cut(s)	29, 266, 355
StuI	AGGCCT	2 cut(s)	119, 127
TaaI	ACNGT	1 cut(s)	94
TaqI	TCGA	2 cut(s)	83, 244
TasI	AATT	3 cut(s)	56, 199, 327
TatI	WGTACW	1 cut(s)	42
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	3 cut(s)	17, 135, 330
Tru9I	TTAA	3 cut(s)	17, 135, 330
TseI	GCWGC	1 cut(s)	350
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	295
VspI	ATTAAT	1 cut(s)	330
XagI	CCTNNNNNAGG	1 cut(s)	27
XmiI	GTMKAC	1 cut(s)	146
XspI	CTAG	3 cut(s)	29, 266, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.