Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002957

Physical Location & Seq

Genomic Coordinates Forward (+)

8041934 .. 8047531

Gene Structure 5598 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00085770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGACTGGAAGTAGGCCTATTGAGACAGTTCCTCGTGAAACTTTACCTGATATTCGTGTATATCACCTTTCACAGAGGAACTTAGTGATTTCCAATTTGCCGAGCAGCTCCATGAGTTATGCTTCAGGAGTTTGTCTGCCATCAATAGAGGCTGAAAGGATCTCAACACTGGATACAAGAACACTCCAGCAGGAAGTTACTTTTAAGATTCTTTGCGCCAATGATAGGGTTGGGGGTGTCATTGGAAAAGGGGGTGCCATTGTCAAGGCTTTTCAGAATGAGACTGGTGCTACTATAAGTGTTGGAGGATCTGTGGCCGAGTGTGATGAAAGATTAATTACTGTTACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009909 GO:0009911 GO:0016604 GO:0016607 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0070013 GO:0090567 GO:0090700 GO:0099402 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

117

Amino Acids

12.47

Weight (kDa)

5.77

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	67 - 116	1.1e-11	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64390 AT5G64390 AT5G64390
fragaria_vesca	FvH4_2g11560 FvH4_2g11560 FvH4_2g11560
malus_domestica	MD05G1048400.v1.1 MD10G1054800.v1.1
prunus_persica	Prupe.8G070900_v2.0.a1
pyrus_communis	pycom05g04000 pycom10g04180
rosa_chinensis	RchiOBHm_Chr1g0353311 RchiOBHm_Chr4g0385021 RchiOBHm_Chr6g0270731 RchiOBHm_Chr6g0272811
rosa_laevigata	RLG00000013774
rosa_multiflora	Rmu_co8284529.1_g000001 Rmu_sc0000642.1_g000012 Rmu_sc0041041.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085770 Rroxscaffold_7G00197640
rosa_rugosa	Rorug06G0056000 Rorug06G0056100 Rorug06G0056200
rosa_samantha	Rh2DG204000 Rh4CG002400 Rh4CG168900 Rh6AG157400 Rh6AG175200 Rh6BG140200 Rh6BG178600 Rh6CG174800 Rh6DG123600 Rh6DG167400 Rh6DG180500 Rh7AG209600 Rh7CG359700
rosa_wichuraiana	Rw6G014930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	254
AclWI	GGATC	2 cut(s)	167, 316
AcoI	YGGCCR	1 cut(s)	315
AcuI	CTGAAG	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	225
AluBI	AGCT	1 cut(s)	108
AluI	AGCT	1 cut(s)	108
Alw26I	GTCTC	2 cut(s)	17, 275
AlwI	GGATC	2 cut(s)	167, 316
AoxI	GGCC	2 cut(s)	14, 315
ApeKI	GCWGC	1 cut(s)	105
AseI	ATTAAT	1 cut(s)	335
AspLEI	GCGC	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	254
BauI	CACGAG	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	117
BccI	CCATC	1 cut(s)	148
BciVI	GTATCC	1 cut(s)	166
BcoDI	GTCTC	2 cut(s)	17, 275
BfuI	GTATCC	1 cut(s)	166
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	256
BpmI	CTGGAG	1 cut(s)	170
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse1I	ACTGG	3 cut(s)	10, 174, 289
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseNI	ACTGG	3 cut(s)	10, 174, 289
BseXI	GCAGC	1 cut(s)	117
BshFI	GGCC	2 cut(s)	16, 317
BshNI	GGYRCC	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmAI	GTCTC	2 cut(s)	17, 275
BsnI	GGCC	2 cut(s)	16, 317
Bsp143I	GATC	2 cut(s)	159, 308
BspANI	GGCC	2 cut(s)	16, 317
BspLI	GGNNCC	1 cut(s)	256
BspPI	GGATC	2 cut(s)	167, 316
BspT107I	GGYRCC	1 cut(s)	254
BsrI	ACTGG	3 cut(s)	10, 174, 289
BssMI	GATC	2 cut(s)	159, 308
BssSI	CACGAG	1 cut(s)	33
Bst2BI	CACGAG	1 cut(s)	33
Bst4CI	ACNGT	2 cut(s)	28, 343
BstDEI	CTNAG	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	2 cut(s)	162, 311
BstMAI	GTCTC	2 cut(s)	17, 275
BstMBI	GATC	2 cut(s)	159, 308
BstV1I	GCAGC	1 cut(s)	117
BstX2I	RGATCY	2 cut(s)	159, 308
BstYI	RGATCY	2 cut(s)	159, 308
BsuI	GTATCC	1 cut(s)	166
BsuRI	GGCC	2 cut(s)	16, 317
BtsIMutI	CAGTG	1 cut(s)	167
CfoI	GCGC	1 cut(s)	218
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	5 cut(s)	16, 108, 152, 269, 317
CviKI_1	RGCY	5 cut(s)	16, 108, 152, 269, 317
DdeI	CTNAG	1 cut(s)	82
DpnI	GATC	2 cut(s)	161, 310
DpnII	GATC	2 cut(s)	159, 308
EaeI	YGGCCR	1 cut(s)	315
Eco147I	AGGCCT	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	108
FaeI	CATG	1 cut(s)	115
FaiI	YATR	5 cut(s)	61, 113, 120, 296, 352
FatI	CATG	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	106
Fsp4HI	GCNGC	1 cut(s)	106
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	1 cut(s)	106
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	16, 317
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	1 cut(s)	115
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HinfI	GANTC	1 cut(s)	208
HphI	GGTGA	1 cut(s)	56
Hpy188I	TCNGA	1 cut(s)	276
Hpy188III	TCNNGA	2 cut(s)	35, 126
HpyCH4III	ACNGT	2 cut(s)	28, 343
HpyCH4V	TGCA	1 cut(s)	350
HpyF3I	CTNAG	1 cut(s)	82
Hsp92II	CATG	1 cut(s)	115
HspAI	GCGC	1 cut(s)	216
Kzo9I	GATC	2 cut(s)	159, 308
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	6 cut(s)	60, 111, 155, 176, 200, 270
Lsp1109I	GCAGC	1 cut(s)	117
MaeIII	GTNAC	2 cut(s)	196, 343
MalI	GATC	2 cut(s)	161, 310
MboI	GATC	2 cut(s)	159, 308
MflI	RGATCY	2 cut(s)	159, 308
MluCI	AATT	2 cut(s)	94, 336
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	4 cut(s)	42, 69, 142, 299
MseI	TTAA	2 cut(s)	204, 335
NdeII	GATC	2 cut(s)	159, 308
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	1 cut(s)	256
NmeAIII	GCCGAG	2 cut(s)	126, 343
PceI	AGGCCT	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	107
PshBI	ATTAAT	1 cut(s)	335
PspN4I	GGNNCC	1 cut(s)	256
PsuI	RGATCY	2 cut(s)	159, 308
SaqAI	TTAA	2 cut(s)	204, 335
SatI	GCNGC	1 cut(s)	106
Sau3AI	GATC	2 cut(s)	159, 308
SetI	ASST	3 cut(s)	49, 69, 110
Sse9I	AATT	2 cut(s)	94, 336
SseBI	AGGCCT	1 cut(s)	16
StuI	AGGCCT	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	28, 343
TasI	AATT	2 cut(s)	94, 336
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	2 cut(s)	204, 335
Tru9I	TTAA	2 cut(s)	204, 335
TscAI	CASTG	1 cut(s)	174
TseI	GCWGC	1 cut(s)	105
TspDTI	ATGAA	1 cut(s)	342
TspRI	CASTG	1 cut(s)	174
VspI	ATTAAT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.