Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002957

Physical Location & Seq

Genomic Coordinates Reverse (-)

24746091 .. 24746702

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG174800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGAAGCACCTTTCTCTCTCTACCAGCGAAGCGTTCAATTTCTTCGACAATGTCCTCCTCTTCCTCCGAGCCTAGCTTAGAAAACGGATCCTCCAAGCGCTCCAGGTCACGCCAGCAGCAGGCTCCGCTCACTGTTCCTCCAGGCCACGTCGCCTTCCGCATGCTCTGCCACGCCTCCCGCATCGGCGGCGTCATCGGCAAGTCCGGCACCGTCATCAAGCAGCTCCAGCAGGCCACCGGCGCAAAGATCAGAATCGAGGAGCCGCCCCAACTCGACTCGCCGGACCGGGTCGTCGTCGTCATCGCTCCCAGCGCAATCCGGTCCAAGATTGTGTTCAGTGGAGACCAAGAGATTGAGGTTTCCAAGGCGCAAGAGGCGCTTTTGAGAGTGTTCGAGAGGATTCTAGAGGTGGCGGCGGAGACCGGAGCGATAGGAGTAGGGGTTGGAGTGGTGTCTTGCCGGTTTCTGGCGGAGACGGCGCAGGTCGGCTCGGTGATAGGCAAGGGCGGCAAGGTGGTGGAGAAGATTAGAAAAGAGACTGGCTGTAAAATTAGGGTCTTGAATGAGAAATTGCCCGTTTGTGCTGCTCCTTCTGACGAGATGGTAGAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0007275 GO:0008150 GO:0009791 GO:0009908 GO:0009909 GO:0009911 GO:0016604 GO:0016607 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0070013 GO:0090567 GO:0090700 GO:0099402 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

204

Amino Acids

21.59

Weight (kDa)

9.47

Isoelectric Point (pI)

63.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	53 - 104	3.5e-13	KH domain
KH_1	PF00013	154 - 198	2.3e-10	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64390 AT5G64390 AT5G64390
fragaria_vesca	FvH4_2g11560 FvH4_2g11560 FvH4_2g11560
malus_domestica	MD05G1048400.v1.1 MD10G1054800.v1.1
prunus_persica	Prupe.8G070900_v2.0.a1
pyrus_communis	pycom05g04000 pycom10g04180
rosa_chinensis	RchiOBHm_Chr1g0353311 RchiOBHm_Chr4g0385021 RchiOBHm_Chr6g0270731 RchiOBHm_Chr6g0272811
rosa_laevigata	RLG00000013774
rosa_multiflora	Rmu_co8284529.1_g000001 Rmu_sc0000642.1_g000012 Rmu_sc0041041.1_g000001
rosa_roxburghii	Rroxscaffold_2G00085770 Rroxscaffold_7G00197640
rosa_rugosa	Rorug06G0056000 Rorug06G0056100 Rorug06G0056200
rosa_samantha	Rh2DG204000 Rh4CG002400 Rh4CG168900 Rh6AG157400 Rh6AG175200 Rh6BG140200 Rh6BG178600 Rh6CG174800 Rh6DG123600 Rh6DG167400 Rh6DG180500 Rh7AG209600 Rh7CG359700
rosa_wichuraiana	Rw6G014930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	293
Acc36I	ACCTGC	1 cut(s)	475
AccB1I	GGYRCC	1 cut(s)	209
AccBSI	CCGCTC	1 cut(s)	130
AciI	CCGC	9 cut(s)	128, 160, 181, 189, 266, 416, 419, 473, 510
AclWI	GGATC	2 cut(s)	84, 97
AcyI	GRCGYC	1 cut(s)	192
AfeI	AGCGCT	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	121, 469
AgsI	TTSAA	2 cut(s)	39, 565
AjiI	CACGTC	1 cut(s)	151
AjnI	CCWGG	2 cut(s)	104, 142
AjuI	GAANNNNNNNTTGG	2 cut(s)	320, 352
AluBI	AGCT	2 cut(s)	78, 226
AluI	AGCT	2 cut(s)	78, 226
Alw26I	GTCTC	4 cut(s)	339, 416, 470, 533
AlwI	GGATC	2 cut(s)	84, 97
Aor51HI	AGCGCT	1 cut(s)	101
AoxI	GGCC	2 cut(s)	145, 234
ApeKI	GCWGC	3 cut(s)	118, 223, 587
AspLEI	GCGC	6 cut(s)	102, 245, 317, 373, 382, 484
AspS9I	GGNCC	2 cut(s)	286, 324
AsuC2I	CCSGG	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	508
AvaII	GGWCC	2 cut(s)	286, 324
BamHI	GGATCC	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	209
BbvI	GCAGC	3 cut(s)	130, 235, 574
BccI	CCATC	1 cut(s)	598
BceAI	ACGGC	1 cut(s)	495
BciT130I	CCWGG	2 cut(s)	106, 144
BcnI	CCSGG	1 cut(s)	290
BcoDI	GTCTC	4 cut(s)	339, 416, 470, 533
BfaI	CTAG	2 cut(s)	75, 407
BfoI	RGCGCY	2 cut(s)	103, 383
BfuAI	ACCTGC	1 cut(s)	475
BisI	GCNGC	7 cut(s)	119, 190, 224, 266, 417, 511, 588
BlsI	GCNGC	7 cut(s)	120, 191, 225, 267, 418, 512, 589
Bme1390I	CCNGG	3 cut(s)	106, 144, 290
Bme18I	GGWCC	2 cut(s)	286, 324
BmgBI	CACGTC	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	286, 324
BmiI	GGNNCC	4 cut(s)	91, 126, 211, 264
BmrFI	CCNGG	3 cut(s)	106, 144, 290
BmsI	GCATC	1 cut(s)	192
BpmI	CTGGAG	3 cut(s)	88, 126, 212
BpuMI	CCSGG	1 cut(s)	290
BsaBI	GATNNNNATC	1 cut(s)	254
BsaHI	GRCGYC	1 cut(s)	192
BsaI	GGTCTC	2 cut(s)	339, 416
BsaJI	CCNNGG	1 cut(s)	366
BsaWI	WCCGGW	2 cut(s)	321, 425
BsaXI	ACNNNNNCTCC	6 cut(s)	77, 107, 124, 154, 429, 459
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 469
Bse118I	RCCGGY	2 cut(s)	239, 462
Bse1I	ACTGG	1 cut(s)	547
Bse8I	GATNNNNATC	1 cut(s)	254
BseBI	CCWGG	2 cut(s)	106, 144
BseDI	CCNNGG	1 cut(s)	366
BseJI	GATNNNNATC	1 cut(s)	254
BseLI	CCNNNNNNNGG	2 cut(s)	121, 469
BseNI	ACTGG	1 cut(s)	547
BseRI	GAGGAG	2 cut(s)	49, 275
BseXI	GCAGC	3 cut(s)	130, 235, 574
BseYI	CCCAGC	1 cut(s)	311
BshFI	GGCC	2 cut(s)	147, 236
BshNI	GGYRCC	1 cut(s)	209
BsiSI	CCGG	7 cut(s)	207, 240, 284, 289, 322, 426, 463
BslI	CCNNNNNNNGG	2 cut(s)	121, 469
BsmAI	GTCTC	4 cut(s)	339, 416, 470, 533
BsmBI	CGTCTC	1 cut(s)	470
BsnI	GGCC	2 cut(s)	147, 236
Bso31I	GGTCTC	2 cut(s)	339, 416
Bsp143I	GATC	2 cut(s)	89, 249
BspACI	CCGC	9 cut(s)	128, 160, 181, 189, 266, 416, 419, 473, 510
BspANI	GGCC	2 cut(s)	147, 236
BspLI	GGNNCC	4 cut(s)	91, 126, 211, 264
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	2 cut(s)	84, 97
BspT107I	GGYRCC	1 cut(s)	209
BspTNI	GGTCTC	2 cut(s)	339, 416
BsrBI	CCGCTC	1 cut(s)	130
BsrFI	RCCGGY	2 cut(s)	239, 462
BsrI	ACTGG	1 cut(s)	547
BssAI	RCCGGY	2 cut(s)	239, 462
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	2 cut(s)	89, 249
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	2 cut(s)	106, 144
Bst4CI	ACNGT	2 cut(s)	136, 214
Bst6I	CTCTTC	1 cut(s)	67
BstACI	GRCGYC	1 cut(s)	192
BstAPI	GCANNNNNTGC	1 cut(s)	168
BstC8I	GCNNGC	4 cut(s)	116, 123, 164, 234
BstDEI	CTNAG	1 cut(s)	79
BstH2I	RGCGCY	2 cut(s)	103, 383
BstHHI	GCGC	6 cut(s)	102, 245, 317, 373, 382, 484
BstKTI	GATC	2 cut(s)	92, 252
BstMAI	GTCTC	4 cut(s)	339, 416, 470, 533
BstMBI	GATC	2 cut(s)	89, 249
BstNI	CCWGG	2 cut(s)	106, 144
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	3 cut(s)	104, 142, 288
BstV1I	GCAGC	3 cut(s)	130, 235, 574
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BsuRI	GGCC	2 cut(s)	147, 236
BtgZI	GCGATG	1 cut(s)	289
BtrI	CACGTC	1 cut(s)	151
BtsIMutI	CAGTG	2 cut(s)	132, 346
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	4 cut(s)	116, 123, 164, 234
CfoI	GCGC	6 cut(s)	102, 245, 317, 373, 382, 484
Cfr10I	RCCGGY	2 cut(s)	239, 462
Cfr13I	GGNCC	2 cut(s)	286, 324
CpoI	CGGWCCG	1 cut(s)	286
CseI	GACGC	1 cut(s)	181
CspI	CGGWCCG	1 cut(s)	286
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	9 cut(s)	73, 78, 125, 147, 226, 236, 265, 492, 546
CviKI_1	RGCY	9 cut(s)	73, 78, 125, 147, 226, 236, 265, 492, 546
DdeI	CTNAG	1 cut(s)	79
DpnI	GATC	2 cut(s)	91, 251
DpnII	GATC	2 cut(s)	89, 249
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
EciI	GGCGGA	2 cut(s)	434, 488
Eco130I	CCWWGG	1 cut(s)	366
Eco31I	GGTCTC	2 cut(s)	339, 416
Eco47I	GGWCC	2 cut(s)	286, 324
Eco47III	AGCGCT	1 cut(s)	101
EcoRII	CCWGG	2 cut(s)	104, 142
EcoT14I	CCWWGG	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	366
Esp3I	CGTCTC	1 cut(s)	470
FaeI	CATG	1 cut(s)	166
FaiI	YATR	1 cut(s)	164
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FatI	CATG	1 cut(s)	162
FauI	CCCGC	1 cut(s)	188
Fnu4HI	GCNGC	7 cut(s)	119, 190, 224, 266, 417, 511, 588
Fsp4HI	GCNGC	7 cut(s)	119, 190, 224, 266, 417, 511, 588
FspBI	CTAG	2 cut(s)	75, 407
GlaI	GCGC	6 cut(s)	101, 244, 316, 372, 381, 483
GluI	GCNGC	7 cut(s)	119, 190, 224, 266, 417, 511, 588
GsaI	CCCAGC	1 cut(s)	315
GsuI	CTGGAG	3 cut(s)	88, 126, 212
HaeII	RGCGCY	2 cut(s)	103, 383
HaeIII	GGCC	2 cut(s)	147, 236
HapII	CCGG	7 cut(s)	207, 240, 284, 289, 322, 426, 463
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	6 cut(s)	102, 245, 317, 373, 382, 484
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	6 cut(s)	100, 243, 315, 371, 380, 482
HinP1I	GCGC	6 cut(s)	100, 243, 315, 371, 380, 482
HinfI	GANTC	3 cut(s)	255, 278, 403
HpaII	CCGG	7 cut(s)	207, 240, 284, 289, 322, 426, 463
HphI	GGTGA	1 cut(s)	508
Hpy188I	TCNGA	3 cut(s)	70, 254, 598
Hpy188III	TCNNGA	3 cut(s)	397, 407, 562
Hpy99I	CGWCG	3 cut(s)	155, 299, 302
HpyAV	CCTTC	2 cut(s)	166, 603
HpyCH4III	ACNGT	2 cut(s)	136, 214
HpyCH4IV	ACGT	1 cut(s)	150
HpyF3I	CTNAG	1 cut(s)	79
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	6 cut(s)	100, 243, 315, 371, 380, 482
Kzo9I	GATC	2 cut(s)	89, 249
LmnI	GCTCC	7 cut(s)	107, 130, 231, 262, 313, 428, 595
Lsp1109I	GCAGC	3 cut(s)	130, 235, 574
LweI	GCATC	1 cut(s)	192
MaeI	CTAG	2 cut(s)	75, 407
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	108
MalI	GATC	2 cut(s)	91, 251
MbiI	CCGCTC	1 cut(s)	130
MboI	GATC	2 cut(s)	89, 249
MboII	GAAGA	3 cut(s)	36, 54, 538
MflI	RGATCY	1 cut(s)	89
MluCI	AATT	3 cut(s)	39, 552, 572
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	427
MspI	CCGG	7 cut(s)	207, 240, 284, 289, 322, 426, 463
MspR9I	CCNGG	3 cut(s)	106, 144, 290
MvaI	CCWGG	2 cut(s)	106, 144
NciI	CCSGG	1 cut(s)	290
NdeII	GATC	2 cut(s)	89, 249
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	4 cut(s)	91, 126, 211, 264
NmuCI	GTSAC	1 cut(s)	108
NspI	RCATGY	1 cut(s)	166
PaeI	GCATGC	1 cut(s)	166
PfeI	GAWTC	2 cut(s)	255, 403
PflFI	GACNNNGTC	2 cut(s)	52, 290
PkrI	GCNGC	7 cut(s)	120, 191, 225, 267, 418, 512, 589
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
Psp6I	CCWGG	2 cut(s)	104, 142
PspFI	CCCAGC	1 cut(s)	311
PspGI	CCWGG	2 cut(s)	104, 142
PspN4I	GGNNCC	4 cut(s)	91, 126, 211, 264
PspPI	GGNCC	2 cut(s)	286, 324
PsuI	RGATCY	1 cut(s)	89
PsyI	GACNNNGTC	2 cut(s)	52, 290
Rsr2I	CGGWCCG	1 cut(s)	286
RsrII	CGGWCCG	1 cut(s)	286
SatI	GCNGC	7 cut(s)	119, 190, 224, 266, 417, 511, 588
Sau3AI	GATC	2 cut(s)	89, 249
Sau96I	GGNCC	2 cut(s)	286, 324
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	3 cut(s)	106, 144, 290
SetI	ASST	9 cut(s)	14, 80, 110, 153, 228, 363, 414, 489, 519
SfaNI	GCATC	1 cut(s)	192
SgrAI	CRCCGGYG	1 cut(s)	239
SinI	GGWCC	2 cut(s)	286, 324
SphI	GCATGC	1 cut(s)	166
Sse9I	AATT	3 cut(s)	39, 552, 572
SsiI	CCGC	9 cut(s)	128, 160, 181, 189, 266, 416, 419, 473, 510
SspMI	CTAG	2 cut(s)	75, 407
StyD4I	CCNGG	3 cut(s)	104, 142, 288
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	2 cut(s)	136, 214
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	4 cut(s)	47, 258, 276, 396
TasI	AATT	3 cut(s)	39, 552, 572
TauI	GCSGC	4 cut(s)	192, 268, 419, 513
TfiI	GAWTC	2 cut(s)	255, 403
TscAI	CASTG	2 cut(s)	139, 346
TseFI	GTSAC	1 cut(s)	108
TseI	GCWGC	3 cut(s)	118, 223, 587
Tsp45I	GTSAC	1 cut(s)	108
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	2 cut(s)	139, 346
Tth111I	GACNNNGTC	2 cut(s)	52, 290
VpaK11BI	GGWCC	2 cut(s)	286, 324
XbaI	TCTAGA	1 cut(s)	406
XceI	RCATGY	1 cut(s)	166
XspI	CTAG	2 cut(s)	75, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.