FvH4_1g02640

ATP synthesis coupled proton transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003298
Physical Location & Seq
Forward (+)
1490642 .. 1491662
1021 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02640.t1

Sequence Viewer

Length: 432 bp
ATGCAAAACGAGATGTTGCAAACTTGTGAACCGCATGAGTTGTGGACGAAGTCGGATAGACTCCGCTCTCGTCTCTCATCCCATTCAATCTCATCAATTTCGCCTCGGCTGCTTATCAAGAAGAGCTTTGCTTACCACAAGATGCCTCAGCAGCCTCTTAACCTCTCTGTTATCAAATTGGACGGCTCTACCTTCGACGTGCAAGTTTCAAGGATGGCAACGGTGGCCAAACTAATAGAGGCCGTGAAAGATGTTTTTGATCAGTCAGCAAATGATGATGAAGTGATTTCATGGTCGCATGTCTGGGGTCATTTTTGCTTATGTTACAATGGCAAGAAGCTACTTGATTACAAGGCATATATTAGAGTCATTGGAATCAAAGATGGCGATCAGCTTCGTTTTGTTCGGCATCTATCAGCTAATAGCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

144

Amino Acids

16.42

Weight (kDa)

9.03

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiquitin_4 PF18036 54 - 138 1.5e-23 Ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 66
AciI CCGC 2 cut(s) 32, 64
AcoI YGGCCR 1 cut(s) 225
AgsI TTSAA 2 cut(s) 87, 210
AjiI CACGTC 1 cut(s) 199
AluBI AGCT 5 cut(s) 126, 340, 394, 419, 426
AluI AGCT 5 cut(s) 126, 340, 394, 419, 426
Alw26I GTCTC 1 cut(s) 77
AoxI GGCC 2 cut(s) 225, 240
ApeKI GCWGC 2 cut(s) 109, 151
BalI TGGCCA 1 cut(s) 227
BbvCI CCTCAGC 1 cut(s) 147
BbvI GCAGC 2 cut(s) 96, 163
BccI CCATC 2 cut(s) 208, 377
BceAI ACGGC 2 cut(s) 199, 227
BclI TGATCA 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 77
BisI GCNGC 2 cut(s) 110, 152
BlsI GCNGC 2 cut(s) 111, 153
BmgBI CACGTC 1 cut(s) 199
BmsI GCATC 2 cut(s) 132, 418
Bpu10I CCTNAGC 1 cut(s) 147
BsaBI GATNNNNATC 1 cut(s) 387
BsaJI CCNNGG 1 cut(s) 104
Bse8I GATNNNNATC 1 cut(s) 387
BseDI CCNNGG 1 cut(s) 104
BseGI GGATG 2 cut(s) 77, 219
BseJI GATNNNNATC 1 cut(s) 387
BseMII CTCAG 1 cut(s) 161
BseXI GCAGC 2 cut(s) 96, 163
BshFI GGCC 2 cut(s) 227, 242
BsmAI GTCTC 1 cut(s) 77
BsmBI CGTCTC 1 cut(s) 77
BsnI GGCC 2 cut(s) 227, 242
Bsp143I GATC 2 cut(s) 259, 388
BspACI CCGC 2 cut(s) 32, 64
BspANI GGCC 2 cut(s) 227, 242
BspCNI CTCAG 1 cut(s) 160
BspQI GCTCTTC 1 cut(s) 116
BsrBI CCGCTC 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 104
BssMI GATC 2 cut(s) 259, 388
Bst4CI ACNGT 1 cut(s) 223
Bst6I CTCTTC 1 cut(s) 116
BstDEI CTNAG 1 cut(s) 147
BstF5I GGATG 2 cut(s) 77, 219
BstKTI GATC 2 cut(s) 262, 391
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 2 cut(s) 259, 388
BstMWI GCNNNNNNNGC 3 cut(s) 109, 151, 224
BstNSI RCATGY 1 cut(s) 302
BstV1I GCAGC 2 cut(s) 96, 163
BsuRI GGCC 2 cut(s) 227, 242
BtrI CACGTC 1 cut(s) 199
BtsCI GGATG 2 cut(s) 77, 219
CviAII CATG 3 cut(s) 35, 291, 299
DdeI CTNAG 1 cut(s) 147
DpnI GATC 2 cut(s) 261, 390
DpnII GATC 2 cut(s) 259, 388
EaeI YGGCCR 1 cut(s) 225
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 3 cut(s) 38, 294, 302
FaiI YATR 7 cut(s) 36, 292, 300, 322, 358, 360, 430
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FatI CATG 3 cut(s) 34, 290, 298
FbaI TGATCA 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 110, 152
FokI GGATG 2 cut(s) 64, 226
Fsp4HI GCNGC 2 cut(s) 110, 152
GluI GCNGC 2 cut(s) 110, 152
HaeIII GGCC 2 cut(s) 227, 242
Hin1II CATG 3 cut(s) 38, 294, 302
HinfI GANTC 3 cut(s) 60, 366, 375
Hpy166II GTNNAC 2 cut(s) 29, 45
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 1 cut(s) 118
Hpy8I GTNNAC 2 cut(s) 29, 45
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 3 cut(s) 4, 19, 202
HpyF10VI GCNNNNNNNGC 3 cut(s) 109, 151, 224
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 3 cut(s) 38, 294, 302
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 2 cut(s) 259, 388
LguI GCTCTTC 1 cut(s) 116
LpnPI CCDG 1 cut(s) 289
Lsp1109I GCAGC 2 cut(s) 96, 163
LweI GCATC 2 cut(s) 132, 418
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 323
MalI GATC 2 cut(s) 261, 390
MbiI CCGCTC 1 cut(s) 66
MboI GATC 2 cut(s) 259, 388
MboII GAAGA 1 cut(s) 133
MlsI TGGCCA 1 cut(s) 227
MluCI AATT 2 cut(s) 96, 176
MluNI TGGCCA 1 cut(s) 227
MlyI GAGTC 2 cut(s) 54, 375
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 5 cut(s) 114, 156, 165, 173, 232
Mox20I TGGCCA 1 cut(s) 227
MscI TGGCCA 1 cut(s) 227
MseI TTAA 1 cut(s) 159
Msp20I TGGCCA 1 cut(s) 227
MwoI GCNNNNNNNGC 3 cut(s) 109, 151, 224
NdeII GATC 2 cut(s) 259, 388
NlaIII CATG 3 cut(s) 38, 294, 302
NmeAIII GCCGAG 1 cut(s) 85
NspI RCATGY 1 cut(s) 302
PciSI GCTCTTC 1 cut(s) 116
PfeI GAWTC 1 cut(s) 375
PflFI GACNNNGTC 1 cut(s) 49
PkrI GCNGC 2 cut(s) 111, 153
PleI GAGTC 2 cut(s) 54, 374
PpsI GAGTC 2 cut(s) 54, 374
PsyI GACNNNGTC 1 cut(s) 49
SapI GCTCTTC 1 cut(s) 116
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 2 cut(s) 110, 152
Sau3AI GATC 2 cut(s) 259, 388
SchI GAGTC 2 cut(s) 54, 375
SetI ASST 8 cut(s) 128, 165, 194, 201, 342, 396, 421, 428
SfaNI GCATC 2 cut(s) 132, 418
Sse9I AATT 2 cut(s) 96, 176
SsiI CCGC 2 cut(s) 32, 64
TaaI ACNGT 1 cut(s) 223
TaiI ACGT 1 cut(s) 201
TaqI TCGA 1 cut(s) 195
TasI AATT 2 cut(s) 96, 176
TfiI GAWTC 1 cut(s) 375
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseI GCWGC 2 cut(s) 109, 151
TspDTI ATGAA 2 cut(s) 279, 294
Tth111I GACNNNGTC 1 cut(s) 49
XceI RCATGY 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.