Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8501197.1

Orthogroup ID

OG0003298

Physical Location & Seq

Genomic Coordinates Forward (+)

2182 .. 2875

Gene Structure 694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8501197.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atgttggaaactcgtgaaccggctgctgcaaatcatcatcatcatgagtactcgtgcacggagtcgaatagcctctgcgttccaatcacatcacattcaatgtcgcctaagttgctaatcaagaagagctttgcttaccacaagatgcctcaacagcctctaaacctctctgttatcaagttggacggctctacctttgaggtgcaagttccaaggacggcaacggtggccaaactaatagaggccgtgaaggatgtttttgatcggtcagcaaatgatgatgaaatgatttcatggtcacatgtttggggtcatttttgcttatgttataatggcgagaagctacttgattacaaggcatacattcgagtcattggaatcaaagatggcgatcaggtagggtcaattgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

137

Amino Acids

15.45

Weight (kDa)

6.22

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02640 FvH4_6g29570
malus_domestica	MD02G1027100.v1.1 MD15G1168600.v1.1 MD17G1213000.v1.1
prunus_persica	Prupe.3G088400_v2.0.a1 Prupe.3G088400_v2.0.a1 Prupe.3G088400_v2.0.a1 Prupe.7G247900_v2.0.a1 Prupe.7G247900_v2.0.a1 Prupe.7G247900_v2.0.a1 Prupe.7G247900_v2.0.a1
pyrus_communis	pycom02g02210 pycom15g15040 pycom17g21800
rosa_chinensis	RchiOBHm_Chr2g0135131
rosa_laevigata	RLG00000015891 RLG00000019444
rosa_multiflora	Rmu_co8501197.1_g000001 Rmu_sc0001385.1_g000018 Rmu_sc0003543.1_g000006
rosa_roxburghii	Rroxscaffold_2G00109460 Rroxscaffold_2G00153300
rosa_rugosa	Rorug01G0478100 Rorug01G0478200 Rorug02G0323400 Rorug02G0323500.1
rosa_samantha	Rh2AG032200 Rh2AG371600 Rh2BG031300 Rh2BG379900 Rh2CG031700 Rh2CG359000 Rh2DG396500
rosa_wichuraiana	Rw0G013590 Rw2G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	330
AcoI	YGGCCR	1 cut(s)	228
AfaI	GTAC	1 cut(s)	50
AflIII	ACRYGT	1 cut(s)	301
AgsI	TTSAA	1 cut(s)	99
AluBI	AGCT	2 cut(s)	129, 343
AluI	AGCT	2 cut(s)	129, 343
Alw21I	GWGCWC	1 cut(s)	59
Alw44I	GTGCAC	1 cut(s)	55
AoxI	GGCC	2 cut(s)	228, 243
ApaLI	GTGCAC	1 cut(s)	55
ApeKI	GCWGC	2 cut(s)	23, 26
BaeGI	GKGCMC	1 cut(s)	59
BalI	TGGCCA	1 cut(s)	230
BauI	CACGAG	2 cut(s)	12, 52
Bbv12I	GWGCWC	1 cut(s)	59
BbvI	GCAGC	2 cut(s)	10, 13
BccI	CCATC	1 cut(s)	380
BceAI	ACGGC	3 cut(s)	202, 230, 234
BisI	GCNGC	2 cut(s)	24, 27
BlsI	GCNGC	2 cut(s)	25, 28
BmcAI	AGTACT	1 cut(s)	50
BmsI	GCATC	1 cut(s)	135
BsaBI	GATNNNNATC	1 cut(s)	390
BsaJI	CCNNGG	1 cut(s)	212
Bse118I	RCCGGY	1 cut(s)	19
Bse8I	GATNNNNATC	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	212
BseGI	GGATG	1 cut(s)	259
BseJI	GATNNNNATC	1 cut(s)	390
BseSI	GKGCMC	1 cut(s)	59
BseXI	GCAGC	2 cut(s)	10, 13
BshFI	GGCC	2 cut(s)	230, 245
BsiHKAI	GWGCWC	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	20
BsnI	GGCC	2 cut(s)	230, 245
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	2 cut(s)	262, 391
BspANI	GGCC	2 cut(s)	230, 245
BspHI	TCATGA	1 cut(s)	43
BspQI	GCTCTTC	1 cut(s)	119
BsrFI	RCCGGY	1 cut(s)	19
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	2 cut(s)	262, 391
BssSI	CACGAG	2 cut(s)	12, 52
BssT1I	CCWWGG	1 cut(s)	212
Bst2BI	CACGAG	2 cut(s)	12, 52
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	119
BstDEI	CTNAG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	2 cut(s)	265, 394
BstMBI	GATC	2 cut(s)	262, 391
BstMWI	GCNNNNNNNGC	3 cut(s)	112, 154, 227
BstNSI	RCATGY	1 cut(s)	305
BstSLI	GKGCMC	1 cut(s)	59
BstV1I	GCAGC	2 cut(s)	10, 13
BsuRI	GGCC	2 cut(s)	230, 245
BtsCI	GGATG	1 cut(s)	259
CciI	TCATGA	1 cut(s)	43
Cfr10I	RCCGGY	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	3 cut(s)	44, 294, 302
CviJI	RGCY	8 cut(s)	23, 72, 129, 157, 189, 230, 245, 343
CviKI_1	RGCY	8 cut(s)	23, 72, 129, 157, 189, 230, 245, 343
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	2 cut(s)	264, 393
DpnII	GATC	2 cut(s)	262, 391
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	212
FaeI	CATG	3 cut(s)	47, 297, 305
FaiI	YATR	6 cut(s)	45, 295, 303, 325, 330, 361
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FatI	CATG	3 cut(s)	43, 293, 301
Fnu4HI	GCNGC	2 cut(s)	24, 27
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	2 cut(s)	24, 27
GluI	GCNGC	2 cut(s)	24, 27
HaeIII	GGCC	2 cut(s)	230, 245
HapII	CCGG	1 cut(s)	20
Hin1II	CATG	3 cut(s)	47, 297, 305
HinfI	GANTC	3 cut(s)	62, 369, 378
HpaII	CCGG	1 cut(s)	20
Hpy166II	GTNNAC	2 cut(s)	17, 57
Hpy188III	TCNNGA	3 cut(s)	14, 44, 121
Hpy8I	GTNNAC	2 cut(s)	17, 57
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4V	TGCA	3 cut(s)	29, 57, 205
HpyF10VI	GCNNNNNNNGC	3 cut(s)	112, 154, 227
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	3 cut(s)	47, 297, 305
Kzo9I	GATC	2 cut(s)	262, 391
LguI	GCTCTTC	1 cut(s)	119
LpnPI	CCDG	2 cut(s)	33, 380
Lsp1109I	GCAGC	2 cut(s)	10, 13
LweI	GCATC	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	297
MalI	GATC	2 cut(s)	264, 393
MboI	GATC	2 cut(s)	262, 391
MboII	GAAGA	1 cut(s)	136
MfeI	CAATTG	1 cut(s)	405
MhlI	GDGCHC	1 cut(s)	59
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	1 cut(s)	405
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	2 cut(s)	71, 378
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	6 cut(s)	83, 159, 168, 176, 193, 235
Mox20I	TGGCCA	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	42
Msp20I	TGGCCA	1 cut(s)	230
MspI	CCGG	1 cut(s)	20
MunI	CAATTG	1 cut(s)	405
MwoI	GCNNNNNNNGC	3 cut(s)	112, 154, 227
NdeII	GATC	2 cut(s)	262, 391
NlaIII	CATG	3 cut(s)	47, 297, 305
NmuCI	GTSAC	1 cut(s)	297
NspI	RCATGY	1 cut(s)	305
PagI	TCATGA	1 cut(s)	43
PciI	ACATGT	1 cut(s)	301
PciSI	GCTCTTC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	378
PkrI	GCNGC	2 cut(s)	25, 28
PleI	GAGTC	2 cut(s)	70, 377
PpsI	GAGTC	2 cut(s)	70, 377
PscI	ACATGT	1 cut(s)	301
PsiI	TTATAA	1 cut(s)	330
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	42
SapI	GCTCTTC	1 cut(s)	119
SatI	GCNGC	2 cut(s)	24, 27
Sau3AI	GATC	2 cut(s)	262, 391
ScaI	AGTACT	1 cut(s)	50
SchI	GAGTC	2 cut(s)	71, 378
SduI	GDGCHC	1 cut(s)	59
SetI	ASST	6 cut(s)	131, 168, 197, 204, 345, 399
SfaNI	GCATC	1 cut(s)	135
SmiMI	CAYNNNNRTG	1 cut(s)	42
Sse9I	AATT	1 cut(s)	405
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	226
TaqI	TCGA	2 cut(s)	65, 367
TaqII	GACCGA	1 cut(s)	255
TasI	AATT	1 cut(s)	405
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	378
TseFI	GTSAC	1 cut(s)	297
TseI	GCWGC	2 cut(s)	23, 26
Tsp45I	GTSAC	1 cut(s)	297
TspDTI	ATGAA	2 cut(s)	282, 297
TspGWI	ACGGA	1 cut(s)	74
VneI	GTGCAC	1 cut(s)	55
XceI	RCATGY	1 cut(s)	305
ZrmI	AGTACT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.