Rh2BG031300

ATP synthesis coupled proton transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003298
Physical Location & Seq
Forward (+)
2077888 .. 2078715
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG031300.1

Sequence Viewer

Length: 438 bp
ATGTTGGAAACTCGTGAACCGGCTGCTGCAAATCATCATCATCATGAGTACTTGTGCACGGAGTCGAATAGCCTCTGCGTTCCAATCACATCCCATTCAATGTCGCCTAAGTTGCTAATCAAGAAGAGCTTTGCTTACCACAAGATGCCTCAACAGCCTCTAAACCTCTCTGTTATCAAGTTGGACGGCTCTACCTTTGAGGTGCAAGTTCCAAGGACGGCAACGGTGGCCAAACTAATAGAGGCCGTGAAGGATGTTTTTGATCGGTCAGCAAATGATGATGAAATGATTTCATGGTCACATGTTTGGGGTCATTTTTGCTTATGTTATAATGGCGAGAAGCTACTTGATTACAAGGCATATATTCGAGTCATTGGAATCAAAGATGGCGATCAGGTAGGCAATGTAGCATATGATCAACGGGAAAAGAGTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

145

Amino Acids

16.46

Weight (kDa)

6.43

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiquitin_4 PF18036 55 - 133 1.6e-21 Ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 330
AcoI YGGCCR 1 cut(s) 228
AfaI GTAC 1 cut(s) 50
AflIII ACRYGT 1 cut(s) 301
AgsI TTSAA 1 cut(s) 99
AluBI AGCT 2 cut(s) 129, 343
AluI AGCT 2 cut(s) 129, 343
Alw21I GWGCWC 1 cut(s) 59
Alw44I GTGCAC 1 cut(s) 55
AoxI GGCC 2 cut(s) 228, 243
ApaLI GTGCAC 1 cut(s) 55
ApeKI GCWGC 2 cut(s) 23, 26
BaeGI GKGCMC 1 cut(s) 59
BalI TGGCCA 1 cut(s) 230
BauI CACGAG 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 2 cut(s) 10, 13
BccI CCATC 1 cut(s) 380
BceAI ACGGC 3 cut(s) 202, 230, 234
BclI TGATCA 1 cut(s) 415
BisI GCNGC 2 cut(s) 24, 27
BlsI GCNGC 2 cut(s) 25, 28
BmcAI AGTACT 1 cut(s) 50
BmsI GCATC 1 cut(s) 135
BsaBI GATNNNNATC 1 cut(s) 390
BsaJI CCNNGG 1 cut(s) 212
Bse118I RCCGGY 1 cut(s) 19
Bse3DI GCAATG 1 cut(s) 409
Bse8I GATNNNNATC 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 212
BseGI GGATG 2 cut(s) 89, 259
BseJI GATNNNNATC 1 cut(s) 390
BseMI GCAATG 1 cut(s) 409
BseSI GKGCMC 1 cut(s) 59
BseXI GCAGC 2 cut(s) 10, 13
BshFI GGCC 2 cut(s) 230, 245
BsiHKAI GWGCWC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 20
BsnI GGCC 2 cut(s) 230, 245
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 3 cut(s) 262, 391, 415
BspANI GGCC 2 cut(s) 230, 245
BspHI TCATGA 1 cut(s) 43
BspQI GCTCTTC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 409
BsrFI RCCGGY 1 cut(s) 19
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 212
BssMI GATC 3 cut(s) 262, 391, 415
BssSI CACGAG 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 212
Bst2BI CACGAG 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 108
BstF5I GGATG 2 cut(s) 89, 259
BstKTI GATC 3 cut(s) 265, 394, 418
BstMBI GATC 3 cut(s) 262, 391, 415
BstMWI GCNNNNNNNGC 3 cut(s) 112, 154, 227
BstNSI RCATGY 1 cut(s) 305
BstSLI GKGCMC 1 cut(s) 59
BstV1I GCAGC 2 cut(s) 10, 13
BsuRI GGCC 2 cut(s) 230, 245
BtsCI GGATG 2 cut(s) 89, 259
CciI TCATGA 1 cut(s) 43
Cfr10I RCCGGY 1 cut(s) 19
Csp6I GTAC 1 cut(s) 49
CviAII CATG 3 cut(s) 44, 294, 302
CviJI RGCY 8 cut(s) 23, 72, 129, 157, 189, 230, 245, 343
CviKI_1 RGCY 8 cut(s) 23, 72, 129, 157, 189, 230, 245, 343
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 1 cut(s) 108
DpnI GATC 3 cut(s) 264, 393, 417
DpnII GATC 3 cut(s) 262, 391, 415
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 212
EcoT14I CCWWGG 1 cut(s) 212
ErhI CCWWGG 1 cut(s) 212
FaeI CATG 3 cut(s) 47, 297, 305
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FatI CATG 3 cut(s) 43, 293, 301
FauNDI CATATG 1 cut(s) 412
FbaI TGATCA 1 cut(s) 415
Fnu4HI GCNGC 2 cut(s) 24, 27
FokI GGATG 2 cut(s) 76, 266
Fsp4HI GCNGC 2 cut(s) 24, 27
GluI GCNGC 2 cut(s) 24, 27
HaeIII GGCC 2 cut(s) 230, 245
HapII CCGG 1 cut(s) 20
Hin1II CATG 3 cut(s) 47, 297, 305
HinfI GANTC 4 cut(s) 62, 369, 378, 430
HpaII CCGG 1 cut(s) 20
Hpy166II GTNNAC 2 cut(s) 17, 57
Hpy188III TCNNGA 3 cut(s) 14, 44, 121
Hpy8I GTNNAC 2 cut(s) 17, 57
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 3 cut(s) 29, 57, 205
HpyF10VI GCNNNNNNNGC 3 cut(s) 112, 154, 227
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 3 cut(s) 47, 297, 305
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 3 cut(s) 262, 391, 415
LguI GCTCTTC 1 cut(s) 119
LpnPI CCDG 2 cut(s) 33, 380
Lsp1109I GCAGC 2 cut(s) 10, 13
LweI GCATC 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 297
MalI GATC 3 cut(s) 264, 393, 417
MboI GATC 3 cut(s) 262, 391, 415
MboII GAAGA 1 cut(s) 136
MhlI GDGCHC 1 cut(s) 59
MlsI TGGCCA 1 cut(s) 230
MluNI TGGCCA 1 cut(s) 230
MlyI GAGTC 2 cut(s) 71, 378
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 6 cut(s) 83, 159, 168, 176, 193, 235
Mox20I TGGCCA 1 cut(s) 230
MscI TGGCCA 1 cut(s) 230
MslI CAYNNNNRTG 1 cut(s) 42
Msp20I TGGCCA 1 cut(s) 230
MspI CCGG 1 cut(s) 20
MwoI GCNNNNNNNGC 3 cut(s) 112, 154, 227
NdeI CATATG 1 cut(s) 412
NdeII GATC 3 cut(s) 262, 391, 415
NlaIII CATG 3 cut(s) 47, 297, 305
NmuCI GTSAC 1 cut(s) 297
NspI RCATGY 1 cut(s) 305
PagI TCATGA 1 cut(s) 43
PciI ACATGT 1 cut(s) 301
PciSI GCTCTTC 1 cut(s) 119
PfeI GAWTC 1 cut(s) 378
PkrI GCNGC 2 cut(s) 25, 28
PleI GAGTC 2 cut(s) 70, 377
PpsI GAGTC 2 cut(s) 70, 377
PscI ACATGT 1 cut(s) 301
PsiI TTATAA 1 cut(s) 330
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 42
SapI GCTCTTC 1 cut(s) 119
SatI GCNGC 2 cut(s) 24, 27
Sau3AI GATC 3 cut(s) 262, 391, 415
ScaI AGTACT 1 cut(s) 50
SchI GAGTC 2 cut(s) 71, 378
SduI GDGCHC 1 cut(s) 59
SetI ASST 6 cut(s) 131, 168, 197, 204, 345, 399
SfaNI GCATC 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 42
StyI CCWWGG 1 cut(s) 212
TaaI ACNGT 1 cut(s) 226
TaqI TCGA 2 cut(s) 65, 367
TaqII GACCGA 1 cut(s) 255
TatI WGTACW 1 cut(s) 48
TfiI GAWTC 1 cut(s) 378
TseFI GTSAC 1 cut(s) 297
TseI GCWGC 2 cut(s) 23, 26
Tsp45I GTSAC 1 cut(s) 297
TspDTI ATGAA 2 cut(s) 282, 297
TspGWI ACGGA 1 cut(s) 74
VneI GTGCAC 1 cut(s) 55
XceI RCATGY 1 cut(s) 305
ZrmI AGTACT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.