MD17G1213000.v1.1

ATP synthesis coupled proton transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0003298
Physical Location & Seq
Forward (+)
26014274 .. 26017373
3100 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1213000.v1.1.491

Sequence Viewer

Length: 810 bp
ATGATGCGAAGGAAAAATGGTAGTGGTGGCACTGGTACTAGTACAACGATGAGGGTTTTGAATCTGATCGAGAGGCGGTGTTTGGCACCGCTCAAGCGAAACGACGACCTTCGCGAGAACGGCGCGCGGATTTCCTCCCGCCACAGCTCGTACAAGAAGCTCGCTCAGCTTCCGCTCCTCAAGCTCTCCGTTCTCAAGCTCGACGGCTCTGTTTTCGAAATTCAGGTTGGGAGGACTGCCACAATAGCAGAGCTCAAACAAGCAGTAGAAGATTTCTTTGGTCCCTCCCAAGACAAGATTTCATGGTCACTGGTTTGGGGGCATTTCTGCTTGTGTCATGTTGGTCAGAAGTTGATTAACGACAGGGCGTACATTCGGAATTTTGGAATTAAGGATGGTGATCAACTTGAATTCATTAGGCATATGTCCATCAGCAACTCACCCTTGAAAAAAGGGTCGAAGAATGAGAGTGTTCCATACAAACAGCAACCTATGTTGACATACGGGCCAAGTTACTATCCCAATGAAGAAGATCTGGAGGCAGGTCATGTGCCTGAATTCGTGCACAAAGACGAAGAAAATTGTGGAGTGGAGGTTAATGGCAGCAATGCAGCAATACAGGAGGACAACTCCAATTACTATCCCAATGTAGAAGATCTGGAGGCAGGTCCGGTGCCTGAATTCAAGGCAGTTCACTTCTTGAAAGGGTGGCTCTCATACTCGAAGGTCGTCGGGGGATTCAAAAAAGGGATCCGAAGGCAGGAATCGTCCATCGAAATTCAGCCTACTTTCCTTAGGAAGCTGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

270

Amino Acids

30.38

Weight (kDa)

8.9

Isoelectric Point (pI)

45.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiquitin_4 PF18036 60 - 141 2.2e-22 Ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 533, 656
AccB1I GGYRCC 2 cut(s) 85, 673
AccBSI CCGCTC 2 cut(s) 91, 175
AccII CGCG 3 cut(s) 114, 125, 127
AciI CCGC 5 cut(s) 76, 89, 127, 139, 173
AclWI GGATC 2 cut(s) 745, 758
AcsI RAATTY 6 cut(s) 219, 379, 410, 557, 680, 777
AfaI GTAC 4 cut(s) 37, 43, 152, 371
AfiI CCNNNNNNNGG 1 cut(s) 760
AgsI TTSAA 6 cut(s) 61, 410, 448, 685, 703, 742
AhlI ACTAGT 1 cut(s) 38
AjuI GAANNNNNNNTTGG 4 cut(s) 210, 242, 261, 293
AluBI AGCT 7 cut(s) 147, 160, 169, 184, 199, 253, 802
AluI AGCT 7 cut(s) 147, 160, 169, 184, 199, 253, 802
Alw21I GWGCWC 2 cut(s) 255, 567
Alw44I GTGCAC 1 cut(s) 563
AlwI GGATC 2 cut(s) 745, 758
AoxI GGCC 1 cut(s) 506
ApaLI GTGCAC 1 cut(s) 563
ApeKI GCWGC 2 cut(s) 603, 611
ApoI RAATTY 6 cut(s) 219, 379, 410, 557, 680, 777
AspLEI GCGC 2 cut(s) 125, 127
AspS9I GGNCC 3 cut(s) 281, 506, 668
AsuHPI GGTGA 2 cut(s) 410, 432
AsuII TTCGAA 1 cut(s) 216
AvaII GGWCC 2 cut(s) 281, 668
AxyI CCTNAGG 1 cut(s) 794
BaeGI GKGCMC 1 cut(s) 567
BamHI GGATCC 1 cut(s) 750
BanI GGYRCC 2 cut(s) 85, 673
BanII GRGCYC 1 cut(s) 255
Bbv12I GWGCWC 2 cut(s) 255, 567
BbvI GCAGC 2 cut(s) 615, 623
BccI CCATC 3 cut(s) 389, 437, 779
BceAI ACGGC 2 cut(s) 136, 220
BclI TGATCA 1 cut(s) 400
BcuI ACTAGT 1 cut(s) 38
BfaI CTAG 1 cut(s) 39
BfuAI ACCTGC 2 cut(s) 533, 656
BglII AGATCT 2 cut(s) 532, 655
BisI GCNGC 2 cut(s) 604, 612
BlpI GCTNAGC 1 cut(s) 165
BlsI GCNGC 2 cut(s) 605, 613
Bme18I GGWCC 2 cut(s) 281, 668
BmgT120I GGNCC 3 cut(s) 281, 506, 668
BmiI GGNNCC 4 cut(s) 87, 283, 675, 752
BplI GAGNNNNNCTC 2 cut(s) 614, 646
BpmI CTGGAG 2 cut(s) 557, 680
Bpu1102I GCTNAGC 1 cut(s) 165
Bpu14I TTCGAA 1 cut(s) 216
BpuEI CTTGAG 3 cut(s) 77, 164, 179
BsaBI GATNNNNATC 1 cut(s) 399
BsaWI WCCGGW 1 cut(s) 670
BsaXI ACNNNNNCTCC 2 cut(s) 579, 609
Bsc4I CCNNNNNNNGG 1 cut(s) 760
Bse1I ACTGG 2 cut(s) 37, 315
Bse21I CCTNAGG 1 cut(s) 794
Bse3DI GCAATG 1 cut(s) 613
Bse8I GATNNNNATC 1 cut(s) 399
BseGI GGATG 1 cut(s) 400
BseJI GATNNNNATC 1 cut(s) 399
BseLI CCNNNNNNNGG 1 cut(s) 760
BseMI GCAATG 1 cut(s) 613
BseMII CTCAG 1 cut(s) 179
BseNI ACTGG 2 cut(s) 37, 315
BsePI GCGCGC 1 cut(s) 123
BseRI GAGGAG 1 cut(s) 167
BseSI GKGCMC 1 cut(s) 567
BseXI GCAGC 2 cut(s) 615, 623
Bsh1236I CGCG 3 cut(s) 114, 125, 127
BshFI GGCC 1 cut(s) 508
BshNI GGYRCC 2 cut(s) 85, 673
BsiHKAI GWGCWC 2 cut(s) 255, 567
BsiSI CCGG 1 cut(s) 671
BslFI GGGAC 1 cut(s) 267
BslI CCNNNNNNNGG 1 cut(s) 760
BsmFI GGGAC 1 cut(s) 267
BsnI GGCC 1 cut(s) 508
Bsp119I TTCGAA 1 cut(s) 216
Bsp1286I GDGCHC 2 cut(s) 255, 567
Bsp143I GATC 5 cut(s) 66, 400, 532, 655, 750
Bsp1720I GCTNAGC 1 cut(s) 165
Bsp68I TCGCGA 1 cut(s) 114
BspACI CCGC 5 cut(s) 76, 89, 127, 139, 173
BspANI GGCC 1 cut(s) 508
BspCNI CTCAG 1 cut(s) 178
BspFNI CGCG 3 cut(s) 114, 125, 127
BspLI GGNNCC 4 cut(s) 87, 283, 675, 752
BspMI ACCTGC 2 cut(s) 533, 656
BspPI GGATC 2 cut(s) 745, 758
BspT104I TTCGAA 1 cut(s) 216
BspT107I GGYRCC 2 cut(s) 85, 673
BsrBI CCGCTC 2 cut(s) 91, 175
BsrDI GCAATG 1 cut(s) 613
BsrI ACTGG 2 cut(s) 37, 315
BssHII GCGCGC 1 cut(s) 123
BssMI GATC 5 cut(s) 66, 400, 532, 655, 750
BstBI TTCGAA 1 cut(s) 216
BstC8I GCNNGC 2 cut(s) 125, 162
BstDEI CTNAG 2 cut(s) 165, 794
BstF5I GGATG 1 cut(s) 400
BstFNI CGCG 3 cut(s) 114, 125, 127
BstHHI GCGC 2 cut(s) 125, 127
BstKTI GATC 5 cut(s) 69, 403, 535, 658, 753
BstMBI GATC 5 cut(s) 66, 400, 532, 655, 750
BstMWI GCNNNNNNNGC 4 cut(s) 120, 166, 181, 245
BstSLI GKGCMC 1 cut(s) 567
BstUI CGCG 3 cut(s) 114, 125, 127
BstV1I GCAGC 2 cut(s) 615, 623
BstX2I RGATCY 3 cut(s) 532, 655, 750
BstYI RGATCY 3 cut(s) 532, 655, 750
Bsu36I CCTNAGG 1 cut(s) 794
BsuRI GGCC 1 cut(s) 508
BtsCI GGATG 1 cut(s) 400
BtsIMutI CAGTG 2 cut(s) 30, 308
BtuMI TCGCGA 1 cut(s) 114
BveI ACCTGC 2 cut(s) 533, 656
Cac8I GCNNGC 2 cut(s) 125, 162
CfoI GCGC 2 cut(s) 125, 127
Cfr13I GGNCC 3 cut(s) 281, 506, 668
Csp6I GTAC 4 cut(s) 36, 42, 151, 370
CviAII CATG 3 cut(s) 303, 338, 548
CviQI GTAC 4 cut(s) 36, 42, 151, 370
DdeI CTNAG 2 cut(s) 165, 794
DpnI GATC 5 cut(s) 68, 402, 534, 657, 752
DpnII GATC 5 cut(s) 66, 400, 532, 655, 750
Ecl136II GAGCTC 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 255
Eco47I GGWCC 2 cut(s) 281, 668
Eco53kI GAGCTC 1 cut(s) 253
Eco81I CCTNAGG 1 cut(s) 794
EcoICRI GAGCTC 1 cut(s) 253
EcoRI GAATTC 3 cut(s) 410, 557, 680
EcoT38I GRGCYC 1 cut(s) 255
FaeI CATG 3 cut(s) 306, 341, 551
FaiI YATR 9 cut(s) 304, 339, 423, 425, 478, 494, 502, 549, 718
FaqI GGGAC 1 cut(s) 267
FatI CATG 3 cut(s) 302, 337, 547
FauI CCCGC 1 cut(s) 146
FauNDI CATATG 1 cut(s) 423
FbaI TGATCA 1 cut(s) 400
Fnu4HI GCNGC 2 cut(s) 604, 612
FokI GGATG 1 cut(s) 407
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 2 cut(s) 604, 612
FspBI CTAG 1 cut(s) 39
GlaI GCGC 2 cut(s) 124, 126
GluI GCNGC 2 cut(s) 604, 612
GsuI CTGGAG 2 cut(s) 557, 680
HaeIII GGCC 1 cut(s) 508
HapII CCGG 1 cut(s) 671
HhaI GCGC 2 cut(s) 125, 127
Hin1II CATG 3 cut(s) 306, 341, 551
Hin6I GCGC 2 cut(s) 123, 125
HinP1I GCGC 2 cut(s) 123, 125
HincII GTYRAC 1 cut(s) 498
HindII GTYRAC 1 cut(s) 498
HinfI GANTC 3 cut(s) 61, 738, 764
HpaII CCGG 1 cut(s) 671
HphI GGTGA 2 cut(s) 410, 432
Hpy166II GTNNAC 3 cut(s) 498, 565, 694
Hpy188I TCNGA 4 cut(s) 66, 348, 378, 755
Hpy188III TCNNGA 5 cut(s) 70, 113, 536, 659, 700
Hpy8I GTNNAC 3 cut(s) 498, 565, 694
Hpy99I CGWCG 3 cut(s) 107, 206, 734
HpyAV CCTTC 4 cut(s) 3, 119, 718, 750
HpyCH4V TGCA 2 cut(s) 565, 611
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 166, 181, 245
HpyF3I CTNAG 2 cut(s) 165, 794
Hsp92II CATG 3 cut(s) 306, 341, 551
HspAI GCGC 2 cut(s) 123, 125
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 5 cut(s) 66, 400, 532, 655, 750
LmnI GCTCC 1 cut(s) 180
Lsp1109I GCAGC 2 cut(s) 615, 623
MaeI CTAG 1 cut(s) 39
MaeIII GTNAC 2 cut(s) 306, 512
MalI GATC 5 cut(s) 68, 402, 534, 657, 752
MbiI CCGCTC 2 cut(s) 91, 175
MboI GATC 5 cut(s) 66, 400, 532, 655, 750
MboII GAAGA 6 cut(s) 281, 472, 539, 542, 587, 665
MflI RGATCY 3 cut(s) 532, 655, 750
MhlI GDGCHC 2 cut(s) 255, 567
MluCI AATT 9 cut(s) 219, 379, 387, 410, 557, 580, 634, 680, 777
MseI TTAA 3 cut(s) 357, 390, 597
MspI CCGG 1 cut(s) 671
MvnI CGCG 3 cut(s) 114, 125, 127
MwoI GCNNNNNNNGC 4 cut(s) 120, 166, 181, 245
NdeI CATATG 1 cut(s) 423
NdeII GATC 5 cut(s) 66, 400, 532, 655, 750
NlaIII CATG 3 cut(s) 306, 341, 551
NlaIV GGNNCC 4 cut(s) 87, 283, 675, 752
NmuCI GTSAC 1 cut(s) 306
NruI TCGCGA 1 cut(s) 114
NspV TTCGAA 1 cut(s) 216
PauI GCGCGC 1 cut(s) 123
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PfeI GAWTC 3 cut(s) 61, 738, 764
PkrI GCNGC 2 cut(s) 605, 613
Psp124BI GAGCTC 1 cut(s) 255
PspN4I GGNNCC 4 cut(s) 87, 283, 675, 752
PspPI GGNCC 3 cut(s) 281, 506, 668
PsuI RGATCY 3 cut(s) 532, 655, 750
PteI GCGCGC 1 cut(s) 123
RruI TCGCGA 1 cut(s) 114
RsaI GTAC 4 cut(s) 37, 43, 152, 371
RsaNI GTAC 4 cut(s) 36, 42, 151, 370
SacI GAGCTC 1 cut(s) 255
SaqAI TTAA 3 cut(s) 357, 390, 597
SatI GCNGC 2 cut(s) 604, 612
Sau3AI GATC 5 cut(s) 66, 400, 532, 655, 750
Sau96I GGNCC 3 cut(s) 281, 506, 668
SduI GDGCHC 2 cut(s) 255, 567
SfuI TTCGAA 1 cut(s) 216
SinI GGWCC 2 cut(s) 281, 668
SmlI CTYRAG 3 cut(s) 92, 179, 194
SmoI CTYRAG 3 cut(s) 92, 179, 194
SpeI ACTAGT 1 cut(s) 38
Sse9I AATT 9 cut(s) 219, 379, 387, 410, 557, 580, 634, 680, 777
SsiI CCGC 5 cut(s) 76, 89, 127, 139, 173
SspMI CTAG 1 cut(s) 39
SstI GAGCTC 1 cut(s) 255
TaqI TCGA 6 cut(s) 69, 201, 216, 458, 722, 774
TasI AATT 9 cut(s) 219, 379, 387, 410, 557, 580, 634, 680, 777
TatI WGTACW 1 cut(s) 41
TfiI GAWTC 3 cut(s) 61, 738, 764
Tru1I TTAA 3 cut(s) 357, 390, 597
Tru9I TTAA 3 cut(s) 357, 390, 597
TscAI CASTG 2 cut(s) 37, 315
TseFI GTSAC 1 cut(s) 306
TseI GCWGC 2 cut(s) 603, 611
Tsp45I GTSAC 1 cut(s) 306
TspDTI ATGAA 3 cut(s) 291, 403, 540
TspGWI ACGGA 1 cut(s) 178
TspRI CASTG 2 cut(s) 37, 315
VneI GTGCAC 1 cut(s) 563
VpaK11BI GGWCC 2 cut(s) 281, 668
XapI RAATTY 6 cut(s) 219, 379, 410, 557, 680, 777
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.