Rh2BG379900

ATP synthesis coupled proton transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003298
Physical Location & Seq
Reverse (-)
53675803 .. 53679590
3788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG379900.1

Sequence Viewer

Length: 489 bp
ATGAGGGTTTTGAAGCTGATAGAGCGGCGGCGTTTGGCTCCGGTGAAGCGAAACGACGTCGTTGATGAGAACGAAGGTGTACGGAGCAGGAGCGTCACTCACTCGTATAAGAAACTAGCTCCGTCGCCATTGCTCACGCTCTCCGTTCTGAAGCTCGACGGCTCTGTTTTCGAAATTCATGTTGGGAGGACAGCGACTGTAGCAGAGCTCAAACAAGCAGTAGAGGTGGTGTTTACTTCTTCTATTAGCAAGATTCCATGGTCACTAGTTTGGGGGCATTTCTGCTTGTGCCATGTAGGTAAGAAGCTAACTAATGACAGAGCGCATATTCGGAATTTTGGGATCAAGGATGGTGATCAAGTATGTACCATAGGAATATCAACTTTTTTTTCAATAAAGTGTCTCCAGCCTTTTTTTTTTTTTTCAGTTGCTGCACTTTTGAATCACAATGCATATGTCCACATCGTCAAATTATGTTTGCATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

162

Amino Acids

18.25

Weight (kDa)

9.71

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiquitin_4 PF18036 45 - 121 4e-20 Ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 60
AccBSI CCGCTC 1 cut(s) 25
AciI CCGC 2 cut(s) 25, 28
AclWI GGATC 1 cut(s) 350
AcsI RAATTY 2 cut(s) 174, 334
AcuI CTGAAG 1 cut(s) 170
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 2 cut(s) 81, 367
AgsI TTSAA 3 cut(s) 13, 393, 442
AhlI ACTAGT 1 cut(s) 265
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AluBI AGCT 5 cut(s) 16, 119, 154, 208, 307
AluI AGCT 5 cut(s) 16, 119, 154, 208, 307
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 407
AlwI GGATC 1 cut(s) 350
AlwNI CAGNNNCTG 2 cut(s) 197, 431
ApeKI GCWGC 1 cut(s) 431
ApoI RAATTY 2 cut(s) 174, 334
AspLEI GCGC 1 cut(s) 325
AsuHPI GGTGA 2 cut(s) 55, 365
AsuII TTCGAA 1 cut(s) 171
BanII GRGCYC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 418
BccI CCATC 1 cut(s) 344
BceAI ACGGC 1 cut(s) 175
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 407
BcuI ACTAGT 1 cut(s) 265
BfaI CTAG 2 cut(s) 116, 266
BfmI CTRYAG 1 cut(s) 198
BisI GCNGC 3 cut(s) 26, 29, 432
BlsI GCNGC 3 cut(s) 27, 30, 433
BmiI GGNNCC 1 cut(s) 39
BplI GAGNNNNNCTC 2 cut(s) 82, 114
BpmI CTGGAG 1 cut(s) 389
Bpu14I TTCGAA 1 cut(s) 171
BsaBI GATNNNNATC 1 cut(s) 354
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 257
BsaWI WCCGGW 1 cut(s) 40
Bse3DI GCAATG 1 cut(s) 128
Bse8I GATNNNNATC 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 257
BseGI GGATG 1 cut(s) 355
BseJI GATNNNNATC 1 cut(s) 354
BseMI GCAATG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 418
BsgI GTGCAG 1 cut(s) 417
BsiHKAI GWGCWC 1 cut(s) 210
BsiSI CCGG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 407
Bsp119I TTCGAA 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 2 cut(s) 342, 355
Bsp19I CCATGG 1 cut(s) 257
BspACI CCGC 2 cut(s) 25, 28
BspLI GGNNCC 1 cut(s) 39
BspPI GGATC 1 cut(s) 350
BspT104I TTCGAA 1 cut(s) 171
BsrBI CCGCTC 1 cut(s) 25
BsrDI GCAATG 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 257
BssMI GATC 2 cut(s) 342, 355
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 257
Bst4CI ACNGT 1 cut(s) 199
BstACI GRCGYC 1 cut(s) 57
BstBI TTCGAA 1 cut(s) 171
BstDSI CCRYGG 1 cut(s) 257
BstF5I GGATG 1 cut(s) 355
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 2 cut(s) 345, 358
BstMAI GTCTC 1 cut(s) 407
BstMBI GATC 2 cut(s) 342, 355
BstMWI GCNNNNNNNGC 2 cut(s) 22, 200
BstSFI CTRYAG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 418
BtgI CCRYGG 1 cut(s) 257
BtsCI GGATG 1 cut(s) 355
CaiI CAGNNNCTG 2 cut(s) 197, 431
CfoI GCGC 1 cut(s) 325
CseI GACGC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 80, 366
CviAII CATG 3 cut(s) 179, 258, 293
CviJI RGCY 8 cut(s) 16, 38, 119, 154, 162, 208, 307, 409
CviKI_1 RGCY 8 cut(s) 16, 38, 119, 154, 162, 208, 307, 409
CviQI GTAC 2 cut(s) 80, 366
DpnI GATC 2 cut(s) 344, 357
DpnII GATC 2 cut(s) 342, 355
Ecl136II GAGCTC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 210
Eco53kI GAGCTC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 257
EcoT22I ATGCAT 1 cut(s) 454
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 257
FaeI CATG 3 cut(s) 182, 261, 296
FatI CATG 3 cut(s) 178, 257, 292
FauNDI CATATG 1 cut(s) 454
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 3 cut(s) 26, 29, 432
FokI GGATG 1 cut(s) 362
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 3 cut(s) 26, 29, 432
FspBI CTAG 2 cut(s) 116, 266
GlaI GCGC 1 cut(s) 324
GluI GCNGC 3 cut(s) 26, 29, 432
GsuI CTGGAG 1 cut(s) 389
HapII CCGG 1 cut(s) 41
HgaI GACGC 1 cut(s) 82
HhaI GCGC 1 cut(s) 325
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 3 cut(s) 182, 261, 296
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HinfI GANTC 2 cut(s) 253, 442
HpaII CCGG 1 cut(s) 41
HphI GGTGA 2 cut(s) 55, 365
Hpy166II GTNNAC 3 cut(s) 80, 234, 460
Hpy188I TCNGA 2 cut(s) 150, 333
Hpy8I GTNNAC 3 cut(s) 80, 234, 460
Hpy99I CGWCG 4 cut(s) 59, 62, 127, 161
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 3 cut(s) 434, 452, 481
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 200
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 3 cut(s) 182, 261, 296
HspAI GCGC 1 cut(s) 323
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 2 cut(s) 342, 355
LmnI GCTCC 4 cut(s) 43, 84, 90, 124
LpnPI CCDG 3 cut(s) 54, 73, 419
Lsp1109I GCAGC 1 cut(s) 418
MaeI CTAG 2 cut(s) 116, 266
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 2 cut(s) 94, 261
MalI GATC 2 cut(s) 344, 357
MbiI CCGCTC 1 cut(s) 25
MboI GATC 2 cut(s) 342, 355
MboII GAAGA 1 cut(s) 231
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 3 cut(s) 174, 334, 470
MnlI CCTC 2 cut(s) 180, 217
Mph1103I ATGCAT 1 cut(s) 454
MseI TTAA 1 cut(s) 487
MspI CCGG 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 22, 200
NcoI CCATGG 1 cut(s) 257
NdeI CATATG 1 cut(s) 454
NdeII GATC 2 cut(s) 342, 355
NlaIII CATG 3 cut(s) 182, 261, 296
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 2 cut(s) 94, 261
NsiI ATGCAT 1 cut(s) 454
NspV TTCGAA 1 cut(s) 171
PfeI GAWTC 2 cut(s) 253, 442
PkrI GCNGC 3 cut(s) 27, 30, 433
Psp124BI GAGCTC 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 39
PstNI CAGNNNCTG 2 cut(s) 197, 431
RsaI GTAC 2 cut(s) 81, 367
RsaNI GTAC 2 cut(s) 80, 366
SacI GAGCTC 1 cut(s) 210
SaqAI TTAA 1 cut(s) 487
SatI GCNGC 3 cut(s) 26, 29, 432
Sau3AI GATC 2 cut(s) 342, 355
SduI GDGCHC 1 cut(s) 210
SetI ASST 9 cut(s) 18, 60, 79, 121, 156, 210, 228, 301, 309
SfcI CTRYAG 1 cut(s) 198
SfuI TTCGAA 1 cut(s) 171
SpeI ACTAGT 1 cut(s) 265
Sse9I AATT 3 cut(s) 174, 334, 470
SsiI CCGC 2 cut(s) 25, 28
SspMI CTAG 2 cut(s) 116, 266
SstI GAGCTC 1 cut(s) 210
StyI CCWWGG 1 cut(s) 257
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 60
TaqI TCGA 2 cut(s) 156, 171
TasI AATT 3 cut(s) 174, 334, 470
TauI GCSGC 2 cut(s) 28, 31
TfiI GAWTC 2 cut(s) 253, 442
Tru1I TTAA 1 cut(s) 487
Tru9I TTAA 1 cut(s) 487
TseFI GTSAC 2 cut(s) 94, 261
TseI GCWGC 1 cut(s) 431
Tsp45I GTSAC 2 cut(s) 94, 261
TspDTI ATGAA 1 cut(s) 167
TspGWI ACGGA 3 cut(s) 97, 111, 133
XapI RAATTY 2 cut(s) 174, 334
XspI CTAG 2 cut(s) 116, 266
ZraI GACGTC 1 cut(s) 58
Zsp2I ATGCAT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.