Rh2DG396500

ATP synthesis coupled proton transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003298
Physical Location & Seq
Reverse (-)
57659878 .. 57662173
2296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG396500.1

Sequence Viewer

Length: 702 bp
ATGAGGGTTTTGAAGCTGATAGAGCGGCGGAGTTTGGCTCCGGTGACGCGAAACGACGTCGTTGATGAGAACGAAGGTGTACGGAGCAGGAGGAGGAGCATCACTCACTCGTATAAGAAACTAGCTCCGTCGCCATTGCTCACGCTCTCCGTTCTGAAGCTCGACGGCTCTGTTTTCGAAATTCATGTTGGGAGGACAGCGACTGTAGCAGAGCTCAAACAAGCAGTAGAGGTGGTGTTTACTTCTTCTATTAGCAAGATTCCATGGTCACTAGTTTGGGGGCATTTCTGCTTGTGCCATGTAGGTAAGAAGCTAACTAATGACAGAGCGCATATTCGGAATTTTGGGATCAAGGATGGTGATCAAATTGAATTCATTAGGCATATGTCCATCAGCAACATGCCTTTGGAAAAAGGGTCTAAGAATGAGACTGTGCCATACAAACAGCACTTAATGTTGTCATATGGATCAAGTGGTCATGAGGAGGAAGTAGAGAATGGTTCAGAGGATTTTGACAATAATGTAAGTCAGGAGGACAACTCTGAGTATCCCAATAGAGCTGTGAAGGAAGGTCATGTGCCTGACTTTAAGTTGCCTCGTTTCTGGAAAGGGTGGCTCTCCTACTCCAAGGTTGTCGAAGGTTTTAAGAGAGGGCAGGAATTATTGATTGAGATGCCTGAATTCCTCAGGAAGCGGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

233

Amino Acids

26.73

Weight (kDa)

8.98

Isoelectric Point (pI)

54.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiquitin_4 PF18036 47 - 128 2.8e-22 Ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 60
AccBSI CCGCTC 1 cut(s) 25
AccII CGCG 1 cut(s) 49
AciI CCGC 3 cut(s) 25, 28, 694
AclWI GGATC 2 cut(s) 356, 475
AcsI RAATTY 4 cut(s) 180, 340, 371, 680
AcuI CTGAAG 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 1 cut(s) 81
AgsI TTSAA 2 cut(s) 13, 371
AhlI ACTAGT 1 cut(s) 271
AjuI GAANNNNNNNTTGG 2 cut(s) 171, 203
AluBI AGCT 6 cut(s) 16, 125, 160, 214, 313, 560
AluI AGCT 6 cut(s) 16, 125, 160, 214, 313, 560
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 2 cut(s) 356, 475
AlwNI CAGNNNCTG 1 cut(s) 203
ApoI RAATTY 4 cut(s) 180, 340, 371, 680
AspLEI GCGC 1 cut(s) 331
AsuHPI GGTGA 2 cut(s) 55, 371
AsuII TTCGAA 1 cut(s) 177
AxyI CCTNAGG 1 cut(s) 686
BanII GRGCYC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 216
BccI CCATC 2 cut(s) 350, 398
BceAI ACGGC 1 cut(s) 181
BciVI GTATCC 1 cut(s) 558
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 1 cut(s) 422
BcuI ACTAGT 1 cut(s) 271
BfaI CTAG 3 cut(s) 122, 272, 700
BfmI CTRYAG 1 cut(s) 204
BfuI GTATCC 1 cut(s) 558
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
BmiI GGNNCC 1 cut(s) 39
BmsI GCATC 2 cut(s) 108, 663
BplI GAGNNNNNCTC 6 cut(s) 22, 54, 88, 120, 524, 556
Bpu14I TTCGAA 1 cut(s) 177
BsaBI GATNNNNATC 1 cut(s) 360
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 263, 627
BsaWI WCCGGW 1 cut(s) 40
Bse21I CCTNAGG 1 cut(s) 686
Bse3DI GCAATG 1 cut(s) 134
Bse8I GATNNNNATC 1 cut(s) 360
BseDI CCNNGG 2 cut(s) 263, 627
BseGI GGATG 1 cut(s) 361
BseJI GATNNNNATC 1 cut(s) 360
BseMI GCAATG 1 cut(s) 134
BseMII CTCAG 2 cut(s) 534, 700
BseRI GAGGAG 3 cut(s) 106, 109, 497
Bsh1236I CGCG 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 216
BsiSI CCGG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 422
Bsp119I TTCGAA 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 4 cut(s) 348, 361, 467, 696
Bsp19I CCATGG 1 cut(s) 263
BspACI CCGC 3 cut(s) 25, 28, 694
BspCNI CTCAG 2 cut(s) 535, 699
BspFNI CGCG 1 cut(s) 49
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 1 cut(s) 39
BspPI GGATC 2 cut(s) 356, 475
BspT104I TTCGAA 1 cut(s) 177
BsrBI CCGCTC 1 cut(s) 25
BsrDI GCAATG 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 263, 627
BssMI GATC 4 cut(s) 348, 361, 467, 696
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 2 cut(s) 263, 627
Bst4CI ACNGT 2 cut(s) 205, 433
BstACI GRCGYC 1 cut(s) 57
BstBI TTCGAA 1 cut(s) 177
BstDEI CTNAG 3 cut(s) 420, 543, 686
BstDSI CCRYGG 1 cut(s) 263
BstF5I GGATG 1 cut(s) 361
BstFNI CGCG 1 cut(s) 49
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 4 cut(s) 351, 364, 470, 699
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 4 cut(s) 348, 361, 467, 696
BstMWI GCNNNNNNNGC 2 cut(s) 22, 206
BstNSI RCATGY 1 cut(s) 403
BstSFI CTRYAG 1 cut(s) 204
BstUI CGCG 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 696
BstYI RGATCY 1 cut(s) 696
Bsu36I CCTNAGG 1 cut(s) 686
BsuI GTATCC 1 cut(s) 558
BtgI CCRYGG 1 cut(s) 263
BtsCI GGATG 1 cut(s) 361
CaiI CAGNNNCTG 1 cut(s) 203
CciI TCATGA 1 cut(s) 478
CfoI GCGC 1 cut(s) 331
CseI GACGC 1 cut(s) 55
Csp6I GTAC 1 cut(s) 80
CviAII CATG 6 cut(s) 185, 264, 299, 400, 479, 575
CviJI RGCY 9 cut(s) 16, 38, 125, 160, 168, 214, 313, 560, 616
CviKI_1 RGCY 9 cut(s) 16, 38, 125, 160, 168, 214, 313, 560, 616
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 3 cut(s) 420, 543, 686
DpnI GATC 4 cut(s) 350, 363, 469, 698
DpnII GATC 4 cut(s) 348, 361, 467, 696
EciI GGCGGA 1 cut(s) 43
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 2 cut(s) 263, 627
Eco24I GRGCYC 1 cut(s) 216
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 176
Eco81I CCTNAGG 1 cut(s) 686
EcoICRI GAGCTC 1 cut(s) 214
EcoRI GAATTC 2 cut(s) 371, 680
EcoT14I CCWWGG 2 cut(s) 263, 627
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 2 cut(s) 263, 627
FaeI CATG 6 cut(s) 188, 267, 302, 403, 482, 578
FatI CATG 6 cut(s) 184, 263, 298, 399, 478, 574
FauNDI CATATG 2 cut(s) 384, 463
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 1 cut(s) 26
FokI GGATG 1 cut(s) 368
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 26
FspBI CTAG 3 cut(s) 122, 272, 700
GlaI GCGC 1 cut(s) 330
GluI GCNGC 1 cut(s) 26
HapII CCGG 1 cut(s) 41
HgaI GACGC 1 cut(s) 55
HhaI GCGC 1 cut(s) 331
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 6 cut(s) 188, 267, 302, 403, 482, 578
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HinfI GANTC 1 cut(s) 259
HpaII CCGG 1 cut(s) 41
HphI GGTGA 2 cut(s) 55, 371
Hpy166II GTNNAC 2 cut(s) 80, 240
Hpy188I TCNGA 4 cut(s) 156, 339, 505, 544
Hpy188III TCNNGA 4 cut(s) 479, 530, 604, 688
Hpy8I GTNNAC 2 cut(s) 80, 240
Hpy99I CGWCG 4 cut(s) 59, 62, 133, 167
HpyAV CCTTC 4 cut(s) 68, 559, 563, 632
HpyCH4III ACNGT 2 cut(s) 205, 433
HpyCH4IV ACGT 1 cut(s) 57
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 206
HpyF3I CTNAG 3 cut(s) 420, 543, 686
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 6 cut(s) 188, 267, 302, 403, 482, 578
HspAI GCGC 1 cut(s) 329
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 4 cut(s) 348, 361, 467, 696
LmnI GCTCC 4 cut(s) 43, 84, 96, 130
LpnPI CCDG 8 cut(s) 54, 73, 515, 589, 594, 641, 673, 690
LweI GCATC 2 cut(s) 108, 663
MaeI CTAG 3 cut(s) 122, 272, 700
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 2 cut(s) 43, 267
MalI GATC 4 cut(s) 350, 363, 469, 698
MbiI CCGCTC 1 cut(s) 25
MboI GATC 4 cut(s) 348, 361, 467, 696
MboII GAAGA 1 cut(s) 237
MflI RGATCY 1 cut(s) 696
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 6 cut(s) 180, 340, 366, 371, 659, 680
MseI TTAA 3 cut(s) 452, 588, 645
MspI CCGG 1 cut(s) 41
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 2 cut(s) 22, 206
NcoI CCATGG 1 cut(s) 263
NdeI CATATG 2 cut(s) 384, 463
NdeII GATC 4 cut(s) 348, 361, 467, 696
NlaIII CATG 6 cut(s) 188, 267, 302, 403, 482, 578
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 2 cut(s) 43, 267
NspI RCATGY 1 cut(s) 403
NspV TTCGAA 1 cut(s) 177
PagI TCATGA 1 cut(s) 478
PfeI GAWTC 1 cut(s) 259
PkrI GCNGC 1 cut(s) 27
Psp124BI GAGCTC 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 39
PstNI CAGNNNCTG 1 cut(s) 203
PsuI RGATCY 1 cut(s) 696
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 3 cut(s) 452, 588, 645
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 4 cut(s) 348, 361, 467, 696
SduI GDGCHC 1 cut(s) 216
SfaNI GCATC 2 cut(s) 108, 663
SfcI CTRYAG 1 cut(s) 204
SfuI TTCGAA 1 cut(s) 177
SpeI ACTAGT 1 cut(s) 271
Sse9I AATT 6 cut(s) 180, 340, 366, 371, 659, 680
SsiI CCGC 3 cut(s) 25, 28, 694
SspMI CTAG 3 cut(s) 122, 272, 700
SstI GAGCTC 1 cut(s) 216
StyI CCWWGG 2 cut(s) 263, 627
TaaI ACNGT 2 cut(s) 205, 433
TaiI ACGT 1 cut(s) 60
TaqI TCGA 3 cut(s) 162, 177, 636
TasI AATT 6 cut(s) 180, 340, 366, 371, 659, 680
TauI GCSGC 1 cut(s) 28
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 3 cut(s) 452, 588, 645
Tru9I TTAA 3 cut(s) 452, 588, 645
TseFI GTSAC 2 cut(s) 43, 267
Tsp45I GTSAC 2 cut(s) 43, 267
TspDTI ATGAA 2 cut(s) 173, 364
TspGWI ACGGA 3 cut(s) 97, 117, 139
XapI RAATTY 4 cut(s) 180, 340, 371, 680
XceI RCATGY 1 cut(s) 403
XspI CTAG 3 cut(s) 122, 272, 700
ZraI GACGTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.