Prupe.3G088400_v2.0.a1

ATP synthesis coupled proton transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0003298
Physical Location & Seq
Forward (+)
6575897 .. 6579104
3208 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G088400.1

Sequence Viewer

Length: 690 bp
ATGAAGATTTTGAATCTGATAGAGAGGCGGTGTTTGGCTCCGCTCAAGCGAGACGACGTCGTTCGTGTGAGTGATGCGCGGTCCGTCACCAACCACCACTCGTACAAGAAACTCCCTCAGCTTCCGCTCCTCAAGCTCTCCGTTCTCAAGCTCGATGGCTCTGTTTTCGAAATTCATGTTGGGAGGACTGCTACAATAGCAGAGCTCAAACAAGCAGTAGAAGAGTTTTTTGGTTTGTTGGAAGGCAAGATTCCATGGTCACTAGTTTGGGGGCATTTCTGCTTGTGCTATGTAGGTCAGAAGCTAACCAATGAGAAGGCGTACATTCGGAACTTTGGAATCAAGGATGGAGATCAACTTCAGTTCATTAGGCATATGTCCATCAGCAACTCACCATTAAAAAGACAGTCCAAGAGTGAGAGTGTTCCTTATAAACAGCACTCAACGTTGACATATGGATCAAATGGACACAAGGATGAAGAAGAGAGTGGTTTGGAGGGTTCTGAAAACAATGCAGTTCATGAGGACAACTCCAATGAAGATCTGGAGGAAGGCCCTGTGCCTCAATTCAAGGTGGTTCACTACTTGAGTGGGTGGCTCTCATGCTCCAAGGTCATGAGGGGTCTCAAAAAAGGGATCCGAAGGCAGGGTCCATCCATCGAAATCCAGGCTATTAGGAAGCTGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

230

Amino Acids

25.96

Weight (kDa)

9.08

Isoelectric Point (pI)

49.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 432
AatII GACGTC 1 cut(s) 60
AccBSI CCGCTC 2 cut(s) 43, 127
AccII CGCG 1 cut(s) 79
AciI CCGC 4 cut(s) 28, 41, 79, 125
AclI AACGTT 1 cut(s) 446
AclWI GGATC 3 cut(s) 466, 631, 644
AcsI RAATTY 1 cut(s) 171
AcuI CTGAAG 1 cut(s) 344
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 2 cut(s) 104, 323
AfiI CCNNNNNNNGG 1 cut(s) 646
AgsI TTSAA 2 cut(s) 13, 571
AhlI ACTAGT 1 cut(s) 262
AjnI CCWGG 1 cut(s) 666
AjuI GAANNNNNNNTTGG 4 cut(s) 162, 194, 213, 245
AluBI AGCT 6 cut(s) 121, 136, 151, 205, 304, 682
AluI AGCT 6 cut(s) 121, 136, 151, 205, 304, 682
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 2 cut(s) 45, 629
AlwI GGATC 3 cut(s) 466, 631, 644
AoxI GGCC 1 cut(s) 553
ApoI RAATTY 1 cut(s) 171
ArsI GACNNNNNNTTYG 2 cut(s) 634, 666
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 3 cut(s) 81, 554, 650
AsuHPI GGTGA 2 cut(s) 79, 384
AsuII TTCGAA 1 cut(s) 168
AvaII GGWCC 2 cut(s) 81, 650
BamHI GGATCC 1 cut(s) 636
BanII GRGCYC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 207
BbvCI CCTCAGC 1 cut(s) 117
BccI CCATC 5 cut(s) 149, 341, 389, 661, 665
BciT130I CCWGG 1 cut(s) 668
BcoDI GTCTC 2 cut(s) 45, 629
BcuI ACTAGT 1 cut(s) 262
BfaI CTAG 2 cut(s) 263, 688
BglII AGATCT 1 cut(s) 541
Bme1390I CCNGG 1 cut(s) 668
Bme18I GGWCC 2 cut(s) 81, 650
BmgT120I GGNCC 3 cut(s) 81, 554, 650
BmiI GGNNCC 3 cut(s) 39, 638, 651
BmrFI CCNGG 1 cut(s) 668
BmsI GCATC 1 cut(s) 64
BplI GAGNNNNNCTC 2 cut(s) 515, 547
BpmI CTGGAG 1 cut(s) 566
Bpu10I CCTNAGC 1 cut(s) 117
Bpu14I TTCGAA 1 cut(s) 168
BpuEI CTTGAG 4 cut(s) 29, 116, 131, 607
BsaBI GATNNNNATC 1 cut(s) 351
BsaHI GRCGYC 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 629
BsaJI CCNNGG 2 cut(s) 254, 609
Bsc4I CCNNNNNNNGG 1 cut(s) 646
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 1 cut(s) 668
BseDI CCNNGG 2 cut(s) 254, 609
BseGI GGATG 3 cut(s) 352, 481, 653
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 1 cut(s) 646
BseMII CTCAG 1 cut(s) 131
BseRI GAGGAG 1 cut(s) 119
Bsh1236I CGCG 1 cut(s) 79
BshFI GGCC 1 cut(s) 555
BsiHKAI GWGCWC 1 cut(s) 207
BslI CCNNNNNNNGG 1 cut(s) 646
BsmAI GTCTC 2 cut(s) 45, 629
BsmBI CGTCTC 1 cut(s) 45
BsnI GGCC 1 cut(s) 555
Bso31I GGTCTC 1 cut(s) 629
Bsp119I TTCGAA 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 5 cut(s) 352, 458, 541, 636, 684
Bsp19I CCATGG 1 cut(s) 254
BspACI CCGC 4 cut(s) 28, 41, 79, 125
BspANI GGCC 1 cut(s) 555
BspCNI CTCAG 1 cut(s) 130
BspFNI CGCG 1 cut(s) 79
BspHI TCATGA 2 cut(s) 520, 615
BspLI GGNNCC 3 cut(s) 39, 638, 651
BspPI GGATC 3 cut(s) 466, 631, 644
BspT104I TTCGAA 1 cut(s) 168
BspTNI GGTCTC 1 cut(s) 629
BsrBI CCGCTC 2 cut(s) 43, 127
BssECI CCNNGG 2 cut(s) 254, 609
BssMI GATC 5 cut(s) 352, 458, 541, 636, 684
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 2 cut(s) 254, 609
Bst2UI CCWGG 1 cut(s) 668
Bst4CI ACNGT 1 cut(s) 408
Bst6I CTCTTC 2 cut(s) 216, 477
BstACI GRCGYC 1 cut(s) 57
BstBI TTCGAA 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 117
BstDSI CCRYGG 1 cut(s) 254
BstF5I GGATG 3 cut(s) 352, 481, 653
BstFNI CGCG 1 cut(s) 79
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 5 cut(s) 355, 461, 544, 639, 687
BstMAI GTCTC 2 cut(s) 45, 629
BstMBI GATC 5 cut(s) 352, 458, 541, 636, 684
BstMWI GCNNNNNNNGC 2 cut(s) 133, 197
BstNI CCWGG 1 cut(s) 668
BstSCI CCNGG 1 cut(s) 666
BstUI CGCG 1 cut(s) 79
BstX2I RGATCY 2 cut(s) 541, 636
BstYI RGATCY 2 cut(s) 541, 636
BsuRI GGCC 1 cut(s) 555
BtgI CCRYGG 1 cut(s) 254
BtsCI GGATG 3 cut(s) 352, 481, 653
CciI TCATGA 2 cut(s) 520, 615
CfoI GCGC 1 cut(s) 79
Cfr13I GGNCC 3 cut(s) 81, 554, 650
CpoI CGGWCCG 1 cut(s) 81
Csp6I GTAC 2 cut(s) 103, 322
CspI CGGWCCG 1 cut(s) 81
CviAII CATG 5 cut(s) 176, 255, 521, 603, 616
CviQI GTAC 2 cut(s) 103, 322
DdeI CTNAG 1 cut(s) 117
DpnI GATC 5 cut(s) 354, 460, 543, 638, 686
DpnII GATC 5 cut(s) 352, 458, 541, 636, 684
Eam1104I CTCTTC 2 cut(s) 216, 477
EarI CTCTTC 2 cut(s) 216, 477
Ecl136II GAGCTC 1 cut(s) 205
Eco130I CCWWGG 2 cut(s) 254, 609
Eco24I GRGCYC 1 cut(s) 207
Eco31I GGTCTC 1 cut(s) 629
Eco47I GGWCC 2 cut(s) 81, 650
Eco53kI GAGCTC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 344
EcoICRI GAGCTC 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 554
EcoRII CCWGG 1 cut(s) 666
EcoT14I CCWWGG 2 cut(s) 254, 609
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 2 cut(s) 254, 609
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 5 cut(s) 179, 258, 524, 606, 619
FatI CATG 5 cut(s) 175, 254, 520, 602, 615
FauNDI CATATG 2 cut(s) 375, 454
FokI GGATG 3 cut(s) 359, 488, 640
FriOI GRGCYC 1 cut(s) 207
FspBI CTAG 2 cut(s) 263, 688
GlaI GCGC 1 cut(s) 78
GsuI CTGGAG 1 cut(s) 566
HaeIII GGCC 1 cut(s) 555
HhaI GCGC 1 cut(s) 79
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 5 cut(s) 179, 258, 524, 606, 619
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HinfI GANTC 3 cut(s) 13, 250, 339
HphI GGTGA 2 cut(s) 79, 384
Hpy166II GTNNAC 2 cut(s) 450, 580
Hpy188I TCNGA 5 cut(s) 18, 300, 330, 505, 641
Hpy188III TCNNGA 3 cut(s) 521, 545, 616
Hpy8I GTNNAC 2 cut(s) 450, 580
Hpy99I CGWCG 2 cut(s) 59, 62
HpyAV CCTTC 4 cut(s) 236, 310, 545, 636
HpyCH4III ACNGT 1 cut(s) 408
HpyCH4IV ACGT 2 cut(s) 57, 446
HpyCH4V TGCA 1 cut(s) 515
HpyF10VI GCNNNNNNNGC 2 cut(s) 133, 197
HpyF3I CTNAG 1 cut(s) 117
HpySE526I ACGT 2 cut(s) 57, 446
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 5 cut(s) 179, 258, 524, 606, 619
HspAI GCGC 1 cut(s) 77
Kzo9I GATC 5 cut(s) 352, 458, 541, 636, 684
LmnI GCTCC 3 cut(s) 43, 132, 611
LpnPI CCDG 5 cut(s) 530, 570, 632, 653, 680
LweI GCATC 1 cut(s) 64
MaeI CTAG 2 cut(s) 263, 688
MaeII ACGT 2 cut(s) 57, 446
MaeIII GTNAC 2 cut(s) 85, 258
MalI GATC 5 cut(s) 354, 460, 543, 638, 686
MbiI CCGCTC 2 cut(s) 43, 127
MboI GATC 5 cut(s) 352, 458, 541, 636, 684
MboII GAAGA 5 cut(s) 16, 233, 491, 494, 551
MflI RGATCY 2 cut(s) 541, 636
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 2 cut(s) 171, 566
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 9 cut(s) 18, 126, 140, 177, 490, 517, 541, 573, 612
MseI TTAA 1 cut(s) 398
MslI CAYNNNNRTG 1 cut(s) 474
MspR9I CCNGG 1 cut(s) 668
MvaI CCWGG 1 cut(s) 668
MvnI CGCG 1 cut(s) 79
MwoI GCNNNNNNNGC 2 cut(s) 133, 197
NcoI CCATGG 1 cut(s) 254
NdeI CATATG 2 cut(s) 375, 454
NdeII GATC 5 cut(s) 352, 458, 541, 636, 684
NlaIII CATG 5 cut(s) 179, 258, 524, 606, 619
NlaIV GGNNCC 3 cut(s) 39, 638, 651
NmuCI GTSAC 2 cut(s) 85, 258
NspV TTCGAA 1 cut(s) 168
PagI TCATGA 2 cut(s) 520, 615
PfeI GAWTC 3 cut(s) 13, 250, 339
PflFI GACNNNGTC 1 cut(s) 56
PsiI TTATAA 1 cut(s) 432
Psp124BI GAGCTC 1 cut(s) 207
Psp1406I AACGTT 1 cut(s) 446
Psp6I CCWGG 1 cut(s) 666
PspGI CCWGG 1 cut(s) 666
PspN4I GGNNCC 3 cut(s) 39, 638, 651
PspPI GGNCC 3 cut(s) 81, 554, 650
PsuI RGATCY 2 cut(s) 541, 636
PsyI GACNNNGTC 1 cut(s) 56
RsaI GTAC 2 cut(s) 104, 323
RsaNI GTAC 2 cut(s) 103, 322
RseI CAYNNNNRTG 1 cut(s) 474
Rsr2I CGGWCCG 1 cut(s) 81
RsrII CGGWCCG 1 cut(s) 81
SacI GAGCTC 1 cut(s) 207
SaqAI TTAA 1 cut(s) 398
Sau3AI GATC 5 cut(s) 352, 458, 541, 636, 684
Sau96I GGNCC 3 cut(s) 81, 554, 650
ScrFI CCNGG 1 cut(s) 668
SduI GDGCHC 1 cut(s) 207
SfaNI GCATC 1 cut(s) 64
SfuI TTCGAA 1 cut(s) 168
SinI GGWCC 2 cut(s) 81, 650
SmiMI CAYNNNNRTG 1 cut(s) 474
SmlI CTYRAG 4 cut(s) 44, 131, 146, 586
SmoI CTYRAG 4 cut(s) 44, 131, 146, 586
SpeI ACTAGT 1 cut(s) 262
Sse9I AATT 2 cut(s) 171, 566
SsiI CCGC 4 cut(s) 28, 41, 79, 125
SspMI CTAG 2 cut(s) 263, 688
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 666
StyI CCWWGG 2 cut(s) 254, 609
TaaI ACNGT 1 cut(s) 408
TaiI ACGT 2 cut(s) 60, 449
TaqI TCGA 3 cut(s) 153, 168, 660
TasI AATT 2 cut(s) 171, 566
TfiI GAWTC 3 cut(s) 13, 250, 339
Tru1I TTAA 1 cut(s) 398
Tru9I TTAA 1 cut(s) 398
TseFI GTSAC 2 cut(s) 85, 258
Tsp45I GTSAC 2 cut(s) 85, 258
TspDTI ATGAA 6 cut(s) 17, 164, 355, 492, 509, 552
TspGWI ACGGA 2 cut(s) 73, 130
Tth111I GACNNNGTC 1 cut(s) 56
VpaK11BI GGWCC 2 cut(s) 81, 650
XapI RAATTY 1 cut(s) 171
XcmI CCANNNNNNNNNTGG 1 cut(s) 541
XspI CTAG 2 cut(s) 263, 688
ZraI GACGTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.