Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003298

Physical Location & Seq

Genomic Coordinates Reverse (-)

10424341 .. 10426536

Gene Structure 2196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g15040.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCCACCGCATGCAGCCTGTTTCCGGCATCACTATCTCCACGGAGACTTCTCAGCGGCAGCGGTCGGAAGAACCATGCTTACCGAAAGCTGCCCCAGGAGCCGCTTAAGCTCTTCGTCATCAAATTGGATGGCTCTAGCTTTGGCAGAGATTCAAGTTTCGATGACAGCTACGGTGGCCGAACTGAAAGAGGCAGTGAAGGATGTTTTCAGTCAGTCGCCGATAGATGAAATGATTTCATGGTCACATGTGTGGGGTAATTTTTGCTTATGCTATAAAGGTCAGAAGCTACTCGATTACAAAGCATTAATCCGACTTTTTGGAGTCAAAGATGGCGATAAGATATTTTTTGTTCAACATGCTTCAATTAAGTATGAGCGGGAAAAGCGACGGTTAGGGTTGTGGAGGAAAAGGATATGTGACATCCCTGCTTATGAACAGCTAGCTAGTGAAGTTGTGATGATGATGATTGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

160

Amino Acids

18.18

Weight (kDa)

8.28

Isoelectric Point (pI)

49.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02640 FvH4_6g29570
malus_domestica	MD02G1027100.v1.1 MD15G1168600.v1.1 MD17G1213000.v1.1
prunus_persica	Prupe.3G088400_v2.0.a1 Prupe.3G088400_v2.0.a1 Prupe.3G088400_v2.0.a1 Prupe.7G247900_v2.0.a1 Prupe.7G247900_v2.0.a1 Prupe.7G247900_v2.0.a1 Prupe.7G247900_v2.0.a1
pyrus_communis	pycom02g02210 pycom15g15040 pycom17g21800
rosa_chinensis	RchiOBHm_Chr2g0135131
rosa_laevigata	RLG00000015891 RLG00000019444
rosa_multiflora	Rmu_co8501197.1_g000001 Rmu_sc0001385.1_g000018 Rmu_sc0003543.1_g000006
rosa_roxburghii	Rroxscaffold_2G00109460 Rroxscaffold_2G00153300
rosa_rugosa	Rorug01G0478100 Rorug01G0478200 Rorug02G0323400 Rorug02G0323500.1
rosa_samantha	Rh2AG032200 Rh2AG371600 Rh2BG031300 Rh2BG379900 Rh2CG031700 Rh2CG359000 Rh2DG396500
rosa_wichuraiana	Rw0G013590 Rw2G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	379
AciI	CCGC	5 cut(s)	8, 56, 62, 103, 379
AcoI	YGGCCR	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	24
AflII	CTTAAG	1 cut(s)	106
AflIII	ACRYGT	1 cut(s)	247
AgsI	TTSAA	3 cut(s)	155, 356, 366
AjnI	CCWGG	1 cut(s)	95
AleI	CACNNNNGTG	1 cut(s)	250
AluBI	AGCT	7 cut(s)	90, 111, 140, 170, 289, 442, 446
AluI	AGCT	7 cut(s)	90, 111, 140, 170, 289, 442, 446
Alw26I	GTCTC	1 cut(s)	39
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	3 cut(s)	14, 59, 90
AseI	ATTAAT	1 cut(s)	308
AsuNHI	GCTAGC	1 cut(s)	442
BbvI	GCAGC	3 cut(s)	26, 71, 77
BccI	CCATC	2 cut(s)	124, 326
BciT130I	CCWGG	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	3 cut(s)	137, 443, 447
BfrI	CTTAAG	1 cut(s)	106
BisI	GCNGC	5 cut(s)	15, 57, 60, 91, 103
BlsI	GCNGC	5 cut(s)	16, 58, 61, 92, 104
Bme1390I	CCNGG	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	97
BmsI	GCATC	1 cut(s)	37
BmtI	GCTAGC	1 cut(s)	446
BsaJI	CCNNGG	2 cut(s)	40, 95
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	2 cut(s)	40, 95
BseGI	GGATG	3 cut(s)	135, 208, 423
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	66
BseXI	GCAGC	3 cut(s)	26, 71, 77
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	179
BsiEI	CGRYCG	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	179
BspACI	CCGC	5 cut(s)	8, 56, 62, 103, 379
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	101
BspOI	GCTAGC	1 cut(s)	446
BspQI	GCTCTTC	1 cut(s)	118
BspTI	CTTAAG	1 cut(s)	106
BsrBI	CCGCTC	1 cut(s)	379
BssECI	CCNNGG	2 cut(s)	40, 95
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	2 cut(s)	175, 393
Bst6I	CTCTTC	1 cut(s)	118
BstAFI	CTTAAG	1 cut(s)	106
BstC8I	GCNNGC	2 cut(s)	12, 444
BstDEI	CTNAG	1 cut(s)	52
BstDSI	CCRYGG	1 cut(s)	40
BstF5I	GGATG	3 cut(s)	135, 208, 423
BstMAI	GTCTC	1 cut(s)	39
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	4 cut(s)	99, 108, 176, 385
BstNI	CCWGG	1 cut(s)	97
BstNSI	RCATGY	3 cut(s)	14, 251, 362
BstSCI	CCNGG	1 cut(s)	95
BstV1I	GCAGC	3 cut(s)	26, 71, 77
BsuRI	GGCC	1 cut(s)	179
BtgI	CCRYGG	1 cut(s)	40
BtsCI	GGATG	3 cut(s)	135, 208, 423
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	2 cut(s)	12, 444
CviAII	CATG	5 cut(s)	11, 76, 240, 248, 359
DdeI	CTNAG	1 cut(s)	52
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	95
FaeI	CATG	5 cut(s)	14, 79, 243, 251, 362
FatI	CATG	5 cut(s)	10, 75, 239, 247, 358
FauI	CCCGC	1 cut(s)	372
Fnu4HI	GCNGC	5 cut(s)	15, 57, 60, 91, 103
FokI	GGATG	3 cut(s)	142, 215, 410
Fsp4HI	GCNGC	5 cut(s)	15, 57, 60, 91, 103
FspBI	CTAG	3 cut(s)	137, 443, 447
GluI	GCNGC	5 cut(s)	15, 57, 60, 91, 103
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	1 cut(s)	25
Hin1II	CATG	5 cut(s)	14, 79, 243, 251, 362
HinfI	GANTC	2 cut(s)	151, 324
HpaII	CCGG	1 cut(s)	25
Hpy188I	TCNGA	3 cut(s)	68, 285, 314
Hpy99I	CGWCG	1 cut(s)	393
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	2 cut(s)	175, 393
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	4 cut(s)	99, 108, 176, 385
HpyF3I	CTNAG	1 cut(s)	52
Hsp92II	CATG	5 cut(s)	14, 79, 243, 251, 362
LguI	GCTCTTC	1 cut(s)	118
LmnI	GCTCC	1 cut(s)	99
LpnPI	CCDG	5 cut(s)	31, 38, 82, 109, 441
Lsp1109I	GCAGC	3 cut(s)	26, 71, 77
LweI	GCATC	1 cut(s)	37
MaeI	CTAG	3 cut(s)	137, 443, 447
MaeIII	GTNAC	2 cut(s)	243, 419
MbiI	CCGCTC	1 cut(s)	379
MboII	GAAGA	2 cut(s)	81, 105
MluCI	AATT	3 cut(s)	124, 259, 366
MlyI	GAGTC	1 cut(s)	333
MmeI	TCCRAC	2 cut(s)	46, 337
MnlI	CCTC	2 cut(s)	184, 399
MseI	TTAA	3 cut(s)	107, 308, 369
MslI	CAYNNNNRTG	1 cut(s)	250
MspA1I	CMGCKG	2 cut(s)	56, 62
MspCI	CTTAAG	1 cut(s)	106
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	4 cut(s)	99, 108, 176, 385
NheI	GCTAGC	1 cut(s)	442
NlaIII	CATG	5 cut(s)	14, 79, 243, 251, 362
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	2 cut(s)	243, 419
NspI	RCATGY	3 cut(s)	14, 251, 362
OliI	CACNNNNGTG	1 cut(s)	250
PaeI	GCATGC	1 cut(s)	14
PciI	ACATGT	1 cut(s)	247
PciSI	GCTCTTC	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	5 cut(s)	16, 58, 61, 92, 104
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
PscI	ACATGT	1 cut(s)	247
PshBI	ATTAAT	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	101
PsrI	GAACNNNNNNTAC	2 cut(s)	64, 96
RseI	CAYNNNNRTG	1 cut(s)	250
SapI	GCTCTTC	1 cut(s)	118
SaqAI	TTAA	3 cut(s)	107, 308, 369
SatI	GCNGC	5 cut(s)	15, 57, 60, 91, 103
SchI	GAGTC	1 cut(s)	333
ScrFI	CCNGG	1 cut(s)	97
SetI	ASST	8 cut(s)	92, 113, 142, 172, 283, 291, 444, 448
SfaNI	GCATC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	250
SmlI	CTYRAG	1 cut(s)	106
SmoI	CTYRAG	1 cut(s)	106
SphI	GCATGC	1 cut(s)	14
Sse9I	AATT	3 cut(s)	124, 259, 366
SsiI	CCGC	5 cut(s)	8, 56, 62, 103, 379
SspMI	CTAG	3 cut(s)	137, 443, 447
StyD4I	CCNGG	1 cut(s)	95
TaaI	ACNGT	2 cut(s)	175, 393
TaqI	TCGA	2 cut(s)	161, 294
TasI	AATT	3 cut(s)	124, 259, 366
TauI	GCSGC	2 cut(s)	59, 105
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	3 cut(s)	107, 308, 369
Tru9I	TTAA	3 cut(s)	107, 308, 369
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	2 cut(s)	243, 419
TseI	GCWGC	3 cut(s)	14, 59, 90
Tsp45I	GTSAC	2 cut(s)	243, 419
TspDTI	ATGAA	3 cut(s)	228, 243, 450
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	1 cut(s)	201
Vha464I	CTTAAG	1 cut(s)	106
VspI	ATTAAT	1 cut(s)	308
XceI	RCATGY	3 cut(s)	14, 251, 362
XspI	CTAG	3 cut(s)	137, 443, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.