Rorug01G0478100

ATP synthesis coupled proton transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003298
Physical Location & Seq
Reverse (-)
56725769 .. 56727010
1242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0478100.1

Sequence Viewer

Length: 984 bp
ATGAGTTCACAGAATCTAAGTAGTGTGTTTATAGTTTTATTTGCTGTTCTGTTATGTCAAACAGGTGTTGATTCACAGCTCCAAGTTGGCTTTTATATAAGTTCATGTAACGTAGCGGAGTTCATTGTGAAGGAGGAAGTTCGAAAAGGGGTGATTGGAAATCGAGGAGTGGCAGCTGGTCTTGTGAGACTGCACTTTCATGACTGCTTTGTTAGGGGTTGTGATGCATCAGTGCTGATTGATTCAACTTCCTCAAACACAGCAGAAAAAGATGCACCAGCAAACAACCCGAGTCTACGAGGGTTTGAAGTCATCGACAATGCCAAGGCCAGACTTGAATCTATATGCAAAGGTGTCGTATCATGTGCTGATATAGTTGCTTTTGCAGCAAGGGATAGCGTTGAACTTACTGGAGGGCTTGGCTATGACGTTCCTGCTGGAAGAAGAGATGGCAGAGTTTCAGTAGCTTCAGACACATTCACAAACTTGCCTCCTCCAACTGCCAATGTCAACCAACTCACTCAACTTTTTTCAAACAAGGGTTTCACGCAAGATGAAATGGTCACTCTCTCTGGAGCACACACAATTGGGCGCTCTCACTGCAGTTCTTTCAGTAATAGATTGTACAACTTCAATGCAACAACAAAGCAGGACCCTAGTTTAGATCCCCGGTACGCTGCGCAGTTGAAGCAGCAATGTCCACAAGGCAACACAAATCCAAACTTAGTGGTTGCCATGAACCCTTTCAGCCCTTTCACAACCGATGTATCCTACTACGCTGACATTTTGGCAAACCGAGGCTTGTTCACATCAGACCAAACTCTCATCACAAACTCTGCAACCGCAAACCAAGTTAATCAAAATGCCAGGAATCCCTTCCTGTGGAATAACAAATTTGCTGCTGCAATGGTGAAGATGGGACGACTCGGTGTCCTGACTGGCAATGCTGGTGAGATTCGGGCAAAGTGCAGGGTCTTTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

327

Amino Acids

35.25

Weight (kDa)

8.36

Isoelectric Point (pI)

34.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 43 - 291 9.4e-88 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 681
AccI GTMKAC 1 cut(s) 295
AciI CCGC 2 cut(s) 116, 843
AclWI GGATC 1 cut(s) 659
AcsI RAATTY 1 cut(s) 893
AcuI CTGAAG 1 cut(s) 453
AfaI GTAC 2 cut(s) 626, 674
AfiI CCNNNNNNNGG 1 cut(s) 882
AgsI TTSAA 7 cut(s) 246, 308, 338, 404, 534, 634, 688
AhdI GACNNNNNGTC 1 cut(s) 929
AjnI CCWGG 1 cut(s) 866
AluBI AGCT 3 cut(s) 79, 176, 467
AluI AGCT 3 cut(s) 79, 176, 467
Alw21I GWGCWC 1 cut(s) 580
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 1 cut(s) 659
Ama87I CYCGRG 1 cut(s) 289
AoxI GGCC 1 cut(s) 327
ApeKI GCWGC 6 cut(s) 173, 386, 677, 691, 899, 902
ApoI RAATTY 1 cut(s) 893
Asp700I GAANNNNTTC 2 cut(s) 743, 875
AspLEI GCGC 2 cut(s) 594, 682
AspS9I GGNCC 1 cut(s) 652
AsuC2I CCSGG 1 cut(s) 670
AsuHPI GGTGA 3 cut(s) 163, 922, 962
AsuII TTCGAA 1 cut(s) 142
AvaI CYCGRG 1 cut(s) 289
AvaII GGWCC 1 cut(s) 652
BaeI ACNNNNGTAYC 2 cut(s) 750, 783
Bbv12I GWGCWC 1 cut(s) 580
BbvI GCAGC 6 cut(s) 185, 398, 664, 703, 886, 889
BccI CCATC 2 cut(s) 443, 910
BcgI CGANNNNNNTGC 2 cut(s) 337, 371
BciT130I CCWGG 1 cut(s) 868
BciVI GTATCC 1 cut(s) 778
BcnI CCSGG 1 cut(s) 670
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 2 cut(s) 657, 982
BfmI CTRYAG 1 cut(s) 601
BfoI RGCGCY 1 cut(s) 595
BfuI GTATCC 1 cut(s) 778
BisI GCNGC 6 cut(s) 174, 387, 678, 692, 900, 903
BlsI GCNGC 6 cut(s) 175, 388, 679, 693, 901, 904
Bme1390I CCNGG 2 cut(s) 670, 868
Bme18I GGWCC 1 cut(s) 652
BmeRI GACNNNNNGTC 1 cut(s) 929
BmeT110I CYCGRG 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 652
BmiI GGNNCC 1 cut(s) 654
BmrFI CCNGG 2 cut(s) 670, 868
BmsI GCATC 3 cut(s) 214, 236, 262
BpmI CTGGAG 2 cut(s) 432, 594
Bpu14I TTCGAA 1 cut(s) 142
BpuMI CCSGG 1 cut(s) 670
BsaJI CCNNGG 3 cut(s) 324, 668, 796
Bsc4I CCNNNNNNNGG 1 cut(s) 882
Bse1I ACTGG 2 cut(s) 415, 943
Bse3DI GCAATG 3 cut(s) 701, 912, 949
BseBI CCWGG 1 cut(s) 868
BseDI CCNNGG 3 cut(s) 324, 668, 796
BseLI CCNNNNNNNGG 1 cut(s) 882
BseMI GCAATG 3 cut(s) 701, 912, 949
BseNI ACTGG 2 cut(s) 415, 943
BseRI GAGGAG 2 cut(s) 180, 483
BseXI GCAGC 6 cut(s) 185, 398, 664, 703, 886, 889
BsgI GTGCAG 1 cut(s) 176
BshFI GGCC 1 cut(s) 329
BsiHKAI GWGCWC 1 cut(s) 580
BsiHKCI CYCGRG 1 cut(s) 289
BsiSI CCGG 1 cut(s) 670
BslFI GGGAC 1 cut(s) 933
BslI CCNNNNNNNGG 1 cut(s) 882
BsmAI GTCTC 1 cut(s) 181
BsmFI GGGAC 1 cut(s) 933
BsnI GGCC 1 cut(s) 329
BsoBI CYCGRG 1 cut(s) 289
Bsp119I TTCGAA 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 580
Bsp1407I TGTACA 1 cut(s) 624
Bsp143I GATC 1 cut(s) 664
BspACI CCGC 2 cut(s) 116, 843
BspANI GGCC 1 cut(s) 329
BspHI TCATGA 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 654
BspMAI CTGCAG 1 cut(s) 605
BspPI GGATC 1 cut(s) 659
BspT104I TTCGAA 1 cut(s) 142
BsrDI GCAATG 3 cut(s) 701, 912, 949
BsrGI TGTACA 1 cut(s) 624
BsrI ACTGG 2 cut(s) 415, 943
BssECI CCNNGG 3 cut(s) 324, 668, 796
BssMI GATC 1 cut(s) 664
BssT1I CCWWGG 1 cut(s) 324
Bst2UI CCWGG 1 cut(s) 868
Bst6I CTCTTC 1 cut(s) 439
BstAUI TGTACA 1 cut(s) 624
BstBI TTCGAA 1 cut(s) 142
BstDEI CTNAG 2 cut(s) 17, 724
BstH2I RGCGCY 1 cut(s) 595
BstHHI GCGC 2 cut(s) 594, 682
BstKTI GATC 1 cut(s) 667
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 1 cut(s) 664
BstMWI GCNNNNNNNGC 3 cut(s) 386, 600, 688
BstNI CCWGG 1 cut(s) 868
BstSCI CCNGG 2 cut(s) 668, 866
BstSFI CTRYAG 1 cut(s) 601
BstV1I GCAGC 6 cut(s) 185, 398, 664, 703, 886, 889
BstX2I RGATCY 1 cut(s) 664
BstYI RGATCY 1 cut(s) 664
BsuI GTATCC 1 cut(s) 778
BsuRI GGCC 1 cut(s) 329
BtsI GCAGTG 1 cut(s) 598
BtsIMutI CAGTG 2 cut(s) 237, 598
CciI TCATGA 1 cut(s) 199
CfoI GCGC 2 cut(s) 594, 682
Cfr13I GGNCC 1 cut(s) 652
Csp6I GTAC 2 cut(s) 625, 673
CspCI CAANNNNNGTGG 2 cut(s) 708, 743
CviAII CATG 4 cut(s) 105, 200, 363, 736
CviJI RGCY 9 cut(s) 79, 90, 176, 329, 418, 423, 467, 750, 801
CviKI_1 RGCY 9 cut(s) 79, 90, 176, 329, 418, 423, 467, 750, 801
CviQI GTAC 2 cut(s) 625, 673
DdeI CTNAG 2 cut(s) 17, 724
DpnI GATC 1 cut(s) 666
DpnII GATC 1 cut(s) 664
DriI GACNNNNNGTC 1 cut(s) 929
Eam1104I CTCTTC 1 cut(s) 439
Eam1105I GACNNNNNGTC 1 cut(s) 929
EarI CTCTTC 1 cut(s) 439
Eco130I CCWWGG 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 652
Eco57I CTGAAG 1 cut(s) 453
Eco88I CYCGRG 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 652
EcoRII CCWGG 1 cut(s) 866
EcoT14I CCWWGG 1 cut(s) 324
EcoT22I ATGCAT 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 4 cut(s) 108, 203, 366, 739
FaqI GGGAC 1 cut(s) 933
FatI CATG 4 cut(s) 104, 199, 362, 735
FblI GTMKAC 1 cut(s) 295
Fnu4HI GCNGC 6 cut(s) 174, 387, 678, 692, 900, 903
Fsp4HI GCNGC 6 cut(s) 174, 387, 678, 692, 900, 903
FspBI CTAG 2 cut(s) 657, 982
FspI TGCGCA 1 cut(s) 681
GlaI GCGC 2 cut(s) 593, 681
GluI GCNGC 6 cut(s) 174, 387, 678, 692, 900, 903
GsuI CTGGAG 2 cut(s) 432, 594
HaeII RGCGCY 1 cut(s) 595
HaeIII GGCC 1 cut(s) 329
HapII CCGG 1 cut(s) 670
HhaI GCGC 2 cut(s) 594, 682
Hin1II CATG 4 cut(s) 108, 203, 366, 739
Hin6I GCGC 2 cut(s) 592, 680
HinP1I GCGC 2 cut(s) 592, 680
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HinfI GANTC 8 cut(s) 13, 71, 242, 292, 338, 871, 924, 955
HpaII CCGG 1 cut(s) 670
HphI GGTGA 3 cut(s) 163, 922, 962
Hpy166II GTNNAC 5 cut(s) 8, 296, 511, 701, 807
Hpy188I TCNGA 2 cut(s) 472, 814
Hpy188III TCNNGA 3 cut(s) 200, 573, 934
Hpy8I GTNNAC 5 cut(s) 8, 296, 511, 701, 807
HpyAV CCTTC 2 cut(s) 124, 886
HpyCH4IV ACGT 2 cut(s) 111, 429
HpyF10VI GCNNNNNNNGC 3 cut(s) 386, 600, 688
HpyF3I CTNAG 2 cut(s) 17, 724
HpySE526I ACGT 2 cut(s) 111, 429
Hsp92II CATG 4 cut(s) 108, 203, 366, 739
HspAI GCGC 2 cut(s) 592, 680
Kzo9I GATC 1 cut(s) 664
LmnI GCTCC 2 cut(s) 84, 575
Lsp1109I GCAGC 6 cut(s) 185, 398, 664, 703, 886, 889
LweI GCATC 3 cut(s) 214, 236, 262
MaeI CTAG 2 cut(s) 657, 982
MaeII ACGT 2 cut(s) 111, 429
MaeIII GTNAC 2 cut(s) 107, 562
MalI GATC 1 cut(s) 666
MboI GATC 1 cut(s) 664
MboII GAAGA 3 cut(s) 453, 456, 925
MfeI CAATTG 1 cut(s) 585
MflI RGATCY 1 cut(s) 664
MhlI GDGCHC 1 cut(s) 580
MluCI AATT 2 cut(s) 585, 893
MlyI GAGTC 2 cut(s) 301, 918
MmeI TCCRAC 1 cut(s) 521
MnlI CCTC 8 cut(s) 127, 158, 262, 293, 407, 501, 504, 791
Mph1103I ATGCAT 1 cut(s) 229
MroXI GAANNNNTTC 2 cut(s) 743, 875
MseI TTAA 2 cut(s) 855, 978
MslI CAYNNNNRTG 1 cut(s) 198
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 1 cut(s) 670
MspR9I CCNGG 2 cut(s) 670, 868
MunI CAATTG 1 cut(s) 585
MvaI CCWGG 1 cut(s) 868
MwoI GCNNNNNNNGC 3 cut(s) 386, 600, 688
NciI CCSGG 1 cut(s) 670
NdeII GATC 1 cut(s) 664
NlaIII CATG 4 cut(s) 108, 203, 366, 739
NlaIV GGNNCC 1 cut(s) 654
NmuCI GTSAC 1 cut(s) 562
NsbI TGCGCA 1 cut(s) 681
NsiI ATGCAT 1 cut(s) 229
NspV TTCGAA 1 cut(s) 142
PagI TCATGA 1 cut(s) 199
PdmI GAANNNNTTC 2 cut(s) 743, 875
PfeI GAWTC 6 cut(s) 13, 71, 242, 338, 871, 955
PkrI GCNGC 6 cut(s) 175, 388, 679, 693, 901, 904
PleI GAGTC 2 cut(s) 300, 918
PpsI GAGTC 2 cut(s) 300, 918
PpuMI RGGWCCY 1 cut(s) 652
Psp5II RGGWCCY 1 cut(s) 652
Psp6I CCWGG 1 cut(s) 866
PspGI CCWGG 1 cut(s) 866
PspN4I GGNNCC 1 cut(s) 654
PspPI GGNCC 1 cut(s) 652
PspPPI RGGWCCY 1 cut(s) 652
PstI CTGCAG 1 cut(s) 605
PsuI RGATCY 1 cut(s) 664
PvuII CAGCTG 1 cut(s) 176
RsaI GTAC 2 cut(s) 626, 674
RsaNI GTAC 2 cut(s) 625, 673
RseI CAYNNNNRTG 1 cut(s) 198
SaqAI TTAA 2 cut(s) 855, 978
SatI GCNGC 6 cut(s) 174, 387, 678, 692, 900, 903
Sau3AI GATC 1 cut(s) 664
Sau96I GGNCC 1 cut(s) 652
SchI GAGTC 2 cut(s) 301, 918
ScrFI CCNGG 2 cut(s) 670, 868
SduI GDGCHC 1 cut(s) 580
SetI ASST 7 cut(s) 67, 81, 114, 178, 355, 432, 469
SfaNI GCATC 3 cut(s) 214, 236, 262
SfcI CTRYAG 1 cut(s) 601
SfuI TTCGAA 1 cut(s) 142
SinI GGWCC 1 cut(s) 652
SmiMI CAYNNNNRTG 1 cut(s) 198
Sse9I AATT 2 cut(s) 585, 893
SsiI CCGC 2 cut(s) 116, 843
SspMI CTAG 2 cut(s) 657, 982
StyD4I CCNGG 2 cut(s) 668, 866
StyI CCWWGG 1 cut(s) 324
TaiI ACGT 2 cut(s) 114, 432
TaqI TCGA 3 cut(s) 142, 163, 315
TasI AATT 2 cut(s) 585, 893
TatI WGTACW 1 cut(s) 624
TfiI GAWTC 6 cut(s) 13, 71, 242, 338, 871, 955
Tru1I TTAA 2 cut(s) 855, 978
Tru9I TTAA 2 cut(s) 855, 978
TscAI CASTG 2 cut(s) 237, 605
TseFI GTSAC 1 cut(s) 562
TseI GCWGC 6 cut(s) 173, 386, 677, 691, 899, 902
Tsp45I GTSAC 1 cut(s) 562
TspDTI ATGAA 5 cut(s) 93, 112, 188, 570, 752
TspRI CASTG 2 cut(s) 237, 605
VpaK11BI GGWCC 1 cut(s) 652
XapI RAATTY 1 cut(s) 893
XmiI GTMKAC 1 cut(s) 295
XmnI GAANNNNTTC 2 cut(s) 743, 875
XspI CTAG 2 cut(s) 657, 982
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.