Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003298

Physical Location & Seq

Genomic Coordinates Forward (+)

20234843 .. 20237027

Gene Structure 2185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g21800.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGATGCGAAGGAAAAATGGTAGTGGTGGCACTGGTACTAGTACAACGATGAGGGTTTTGAATCTGATCGAGAGGCGGTGTTTGGCACCGCTCAAGCGAAACGACGACCTTCGCGAAAACGGCATGCGGATTTCCTCCCGCCACAGCTCGTACAAGAAGCTCGTTCAGCTTCCGCTCCTCAAGCTCTCCGTTCTCAAGCTCGACGGCTCTGTTTTCGAAATTCAGGTTGGGAGGACTGCCACAATAGCAGAGCTCAAACAAGCAGTAGAAGATTTCTTTGGTCCCTCCCAAGACAAGATTCCATGGTCACTGGTTTGGGGGCATTTCTGCTTGTGTCATGTTGGTCAGAAGTTGATTAATGACAGGGCGTACATTCGGAATTTCGGAATTAAGGACGGTGATCAACTTGAATTCATTAGGCATATGTCCATCAGCAACTCACCATTGAAAAAAGGGTCGAAGAATGAGAGTGTTCCATACAAACAGCAACCTATGTTGACGTATGGGCCAAGTTACTATCCCAATGAAGATCGATCTGGAGGCAGGTCATGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

186

Amino Acids

20.92

Weight (kDa)

9.78

Isoelectric Point (pI)

45.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02640 FvH4_6g29570
malus_domestica	MD02G1027100.v1.1 MD15G1168600.v1.1 MD17G1213000.v1.1
prunus_persica	Prupe.3G088400_v2.0.a1 Prupe.3G088400_v2.0.a1 Prupe.3G088400_v2.0.a1 Prupe.7G247900_v2.0.a1 Prupe.7G247900_v2.0.a1 Prupe.7G247900_v2.0.a1 Prupe.7G247900_v2.0.a1
pyrus_communis	pycom02g02210 pycom15g15040 pycom17g21800
rosa_chinensis	RchiOBHm_Chr2g0135131
rosa_laevigata	RLG00000015891 RLG00000019444
rosa_multiflora	Rmu_co8501197.1_g000001 Rmu_sc0001385.1_g000018 Rmu_sc0003543.1_g000006
rosa_roxburghii	Rroxscaffold_2G00109460 Rroxscaffold_2G00153300
rosa_rugosa	Rorug01G0478100 Rorug01G0478200 Rorug02G0323400 Rorug02G0323500.1
rosa_samantha	Rh2AG032200 Rh2AG371600 Rh2BG031300 Rh2BG379900 Rh2CG031700 Rh2CG359000 Rh2DG396500
rosa_wichuraiana	Rw0G013590 Rw2G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	534
AccB1I	GGYRCC	1 cut(s)	85
AccBSI	CCGCTC	2 cut(s)	91, 175
AccII	CGCG	1 cut(s)	114
AciI	CCGC	5 cut(s)	76, 89, 127, 139, 173
AcsI	RAATTY	3 cut(s)	219, 379, 410
AfaI	GTAC	4 cut(s)	37, 43, 152, 371
AgsI	TTSAA	3 cut(s)	61, 410, 448
AhlI	ACTAGT	1 cut(s)	38
AjuI	GAANNNNNNNTTGG	6 cut(s)	210, 242, 261, 282, 293, 314
AluBI	AGCT	6 cut(s)	147, 160, 169, 184, 199, 253
AluI	AGCT	6 cut(s)	147, 160, 169, 184, 199, 253
Alw21I	GWGCWC	1 cut(s)	255
AoxI	GGCC	1 cut(s)	506
ApoI	RAATTY	3 cut(s)	219, 379, 410
AseI	ATTAAT	1 cut(s)	357
AspS9I	GGNCC	2 cut(s)	281, 506
AsuHPI	GGTGA	2 cut(s)	410, 432
AsuII	TTCGAA	1 cut(s)	216
AvaII	GGWCC	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	255
BccI	CCATC	1 cut(s)	437
BceAI	ACGGC	2 cut(s)	136, 220
BclI	TGATCA	1 cut(s)	400
BcuI	ACTAGT	1 cut(s)	38
BfaI	CTAG	1 cut(s)	39
BfuAI	ACCTGC	1 cut(s)	534
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	2 cut(s)	281, 506
BmiI	GGNNCC	2 cut(s)	87, 283
BpmI	CTGGAG	1 cut(s)	558
Bpu14I	TTCGAA	1 cut(s)	216
BpuEI	CTTGAG	3 cut(s)	77, 164, 179
Bsa29I	ATCGAT	1 cut(s)	532
BsaJI	CCNNGG	1 cut(s)	302
Bse1I	ACTGG	2 cut(s)	37, 315
BseCI	ATCGAT	1 cut(s)	532
BseDI	CCNNGG	1 cut(s)	302
BseNI	ACTGG	2 cut(s)	37, 315
BseRI	GAGGAG	1 cut(s)	167
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	508
BshNI	GGYRCC	1 cut(s)	85
BshVI	ATCGAT	1 cut(s)	532
BsiHKAI	GWGCWC	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	267
BsmFI	GGGAC	1 cut(s)	267
BsnI	GGCC	1 cut(s)	508
Bsp119I	TTCGAA	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	4 cut(s)	66, 400, 529, 533
Bsp19I	CCATGG	1 cut(s)	302
Bsp68I	TCGCGA	1 cut(s)	114
BspACI	CCGC	5 cut(s)	76, 89, 127, 139, 173
BspANI	GGCC	1 cut(s)	508
BspDI	ATCGAT	1 cut(s)	532
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	87, 283
BspMI	ACCTGC	1 cut(s)	534
BspT104I	TTCGAA	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	85
BsrBI	CCGCTC	2 cut(s)	91, 175
BsrI	ACTGG	2 cut(s)	37, 315
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	4 cut(s)	66, 400, 529, 533
BssT1I	CCWWGG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	398
BstBI	TTCGAA	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	125
BstDSI	CCRYGG	1 cut(s)	302
BstFNI	CGCG	1 cut(s)	114
BstKTI	GATC	4 cut(s)	69, 403, 532, 536
BstMBI	GATC	4 cut(s)	66, 400, 529, 533
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 166, 181, 245
BstNSI	RCATGY	1 cut(s)	127
BstUI	CGCG	1 cut(s)	114
Bsu15I	ATCGAT	1 cut(s)	532
BsuRI	GGCC	1 cut(s)	508
BsuTUI	ATCGAT	1 cut(s)	532
BtgI	CCRYGG	1 cut(s)	302
BtsIMutI	CAGTG	2 cut(s)	30, 308
BtuMI	TCGCGA	1 cut(s)	114
BveI	ACCTGC	1 cut(s)	534
Cac8I	GCNNGC	1 cut(s)	125
Cfr13I	GGNCC	2 cut(s)	281, 506
ClaI	ATCGAT	1 cut(s)	532
Csp6I	GTAC	4 cut(s)	36, 42, 151, 370
CviAII	CATG	4 cut(s)	124, 303, 338, 549
CviJI	RGCY	8 cut(s)	147, 160, 169, 184, 199, 207, 253, 508
CviKI_1	RGCY	8 cut(s)	147, 160, 169, 184, 199, 207, 253, 508
CviQI	GTAC	4 cut(s)	36, 42, 151, 370
DpnI	GATC	4 cut(s)	68, 402, 531, 535
DpnII	GATC	4 cut(s)	66, 400, 529, 533
Ecl136II	GAGCTC	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	302
Eco24I	GRGCYC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	281
Eco53kI	GAGCTC	1 cut(s)	253
EcoICRI	GAGCTC	1 cut(s)	253
EcoRI	GAATTC	1 cut(s)	410
EcoT14I	CCWWGG	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	302
FaeI	CATG	4 cut(s)	127, 306, 341, 552
FaiI	YATR	9 cut(s)	125, 304, 339, 423, 425, 478, 494, 504, 550
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	4 cut(s)	123, 302, 337, 548
FauI	CCCGC	1 cut(s)	146
FauNDI	CATATG	1 cut(s)	423
FbaI	TGATCA	1 cut(s)	400
FriOI	GRGCYC	1 cut(s)	255
FspBI	CTAG	1 cut(s)	39
GsuI	CTGGAG	1 cut(s)	558
HaeIII	GGCC	1 cut(s)	508
Hin1II	CATG	4 cut(s)	127, 306, 341, 552
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HinfI	GANTC	2 cut(s)	61, 298
HphI	GGTGA	2 cut(s)	410, 432
Hpy166II	GTNNAC	1 cut(s)	498
Hpy188I	TCNGA	4 cut(s)	66, 348, 378, 386
Hpy188III	TCNNGA	3 cut(s)	70, 113, 537
Hpy8I	GTNNAC	1 cut(s)	498
Hpy99I	CGWCG	2 cut(s)	107, 206
HpyAV	CCTTC	2 cut(s)	3, 119
HpyCH4III	ACNGT	1 cut(s)	398
HpyCH4IV	ACGT	1 cut(s)	500
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 166, 181, 245
HpySE526I	ACGT	1 cut(s)	500
Hsp92II	CATG	4 cut(s)	127, 306, 341, 552
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	4 cut(s)	66, 400, 529, 533
LmnI	GCTCC	1 cut(s)	180
LpnPI	CCDG	6 cut(s)	18, 209, 296, 349, 522, 529
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	1 cut(s)	500
MaeIII	GTNAC	2 cut(s)	306, 512
MalI	GATC	4 cut(s)	68, 402, 531, 535
MbiI	CCGCTC	2 cut(s)	91, 175
MboI	GATC	4 cut(s)	66, 400, 529, 533
MboII	GAAGA	3 cut(s)	281, 472, 539
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	4 cut(s)	219, 379, 387, 410
MnlI	CCTC	7 cut(s)	45, 66, 145, 188, 225, 295, 533
MseI	TTAA	2 cut(s)	357, 390
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	4 cut(s)	120, 166, 181, 245
NcoI	CCATGG	1 cut(s)	302
NdeI	CATATG	1 cut(s)	423
NdeII	GATC	4 cut(s)	66, 400, 529, 533
NlaIII	CATG	4 cut(s)	127, 306, 341, 552
NlaIV	GGNNCC	2 cut(s)	87, 283
NmuCI	GTSAC	1 cut(s)	306
NruI	TCGCGA	1 cut(s)	114
NspI	RCATGY	1 cut(s)	127
NspV	TTCGAA	1 cut(s)	216
PaeI	GCATGC	1 cut(s)	127
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	61, 298
PshBI	ATTAAT	1 cut(s)	357
Psp124BI	GAGCTC	1 cut(s)	255
PspN4I	GGNNCC	2 cut(s)	87, 283
PspPI	GGNCC	2 cut(s)	281, 506
RruI	TCGCGA	1 cut(s)	114
RsaI	GTAC	4 cut(s)	37, 43, 152, 371
RsaNI	GTAC	4 cut(s)	36, 42, 151, 370
SacI	GAGCTC	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	357, 390
Sau3AI	GATC	4 cut(s)	66, 400, 529, 533
Sau96I	GGNCC	2 cut(s)	281, 506
SduI	GDGCHC	1 cut(s)	255
SfuI	TTCGAA	1 cut(s)	216
SinI	GGWCC	1 cut(s)	281
SmlI	CTYRAG	3 cut(s)	92, 179, 194
SmoI	CTYRAG	3 cut(s)	92, 179, 194
SpeI	ACTAGT	1 cut(s)	38
SphI	GCATGC	1 cut(s)	127
Sse9I	AATT	4 cut(s)	219, 379, 387, 410
SsiI	CCGC	5 cut(s)	76, 89, 127, 139, 173
SspMI	CTAG	1 cut(s)	39
SstI	GAGCTC	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	1 cut(s)	398
TaiI	ACGT	1 cut(s)	503
TaqI	TCGA	5 cut(s)	69, 201, 216, 458, 532
TasI	AATT	4 cut(s)	219, 379, 387, 410
TatI	WGTACW	1 cut(s)	41
TfiI	GAWTC	2 cut(s)	61, 298
Tru1I	TTAA	2 cut(s)	357, 390
Tru9I	TTAA	2 cut(s)	357, 390
TscAI	CASTG	2 cut(s)	37, 315
TseFI	GTSAC	1 cut(s)	306
Tsp45I	GTSAC	1 cut(s)	306
TspDTI	ATGAA	2 cut(s)	403, 540
TspGWI	ACGGA	1 cut(s)	178
TspRI	CASTG	2 cut(s)	37, 315
VpaK11BI	GGWCC	1 cut(s)	281
VspI	ATTAAT	1 cut(s)	357
XapI	RAATTY	3 cut(s)	219, 379, 410
XceI	RCATGY	1 cut(s)	127
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.