Rh2AG371600

ATP synthesis coupled proton transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003298
Physical Location & Seq
Forward (+)
55193548 .. 55197352
3805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG371600.1

Sequence Viewer

Length: 492 bp
ATGAGGGTTTTGAAGCTGATAGAGCGGCGGCGTTTGGCTCCGGTGACGCGAAACGACGTCGTTGATGAGAACGAAGGCGTACGGACCAGGAGCAGGAGCATCACTCACTCGTATAAGAAACTAGCTCCGTCGCCATTGCTCACGCTCTCCGTTCTGAAGCTCGACGGCTCTGTTTTCGAAATTCATGTTGGGAGGACAGCGACTGTAGCAGAGCTCAAACAAGCAGTAGAGGTGGTGTTTACTTCTTCTATTAGCAAGATTCCATGGTCACTAGTTTGGGGGCATTTCTGCTTGTGCCATGTAGGTAAGAAGCTAACTAATGACAGAGCGCATATTCGGAATTTTGGGATCAAGGATGGTGATCAAGTATGTACCATAGGAATATCAACTTTTTTTTCAATAAAGTGTCTCCAGCCTTTTTTTTTTTCAGTTGCTGCACTTTTGAATCACAATGCATATGTCCATATCGTAAAATTGTGTTTGCATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

163

Amino Acids

18.35

Weight (kDa)

9.75

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiquitin_4 PF18036 47 - 123 4.1e-20 Ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 60
AccBSI CCGCTC 1 cut(s) 25
AccII CGCG 1 cut(s) 49
AciI CCGC 2 cut(s) 25, 28
AclWI GGATC 1 cut(s) 356
AcsI RAATTY 2 cut(s) 180, 340
AcuI CTGAAG 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 2 cut(s) 81, 373
AfiI CCNNNNNNNGG 1 cut(s) 93
AgsI TTSAA 3 cut(s) 13, 399, 445
AhlI ACTAGT 1 cut(s) 271
AjnI CCWGG 1 cut(s) 86
AjuI GAANNNNNNNTTGG 2 cut(s) 171, 203
AluBI AGCT 5 cut(s) 16, 125, 160, 214, 313
AluI AGCT 5 cut(s) 16, 125, 160, 214, 313
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 1 cut(s) 413
AlwI GGATC 1 cut(s) 356
AlwNI CAGNNNCTG 2 cut(s) 203, 434
ApeKI GCWGC 1 cut(s) 434
ApoI RAATTY 2 cut(s) 180, 340
AspLEI GCGC 1 cut(s) 331
AspS9I GGNCC 1 cut(s) 84
AsuHPI GGTGA 2 cut(s) 55, 371
AsuII TTCGAA 1 cut(s) 177
AvaII GGWCC 1 cut(s) 84
BanII GRGCYC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 421
BccI CCATC 1 cut(s) 350
BceAI ACGGC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 88
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 1 cut(s) 413
BcuI ACTAGT 1 cut(s) 271
BfaI CTAG 2 cut(s) 122, 272
BfmI CTRYAG 1 cut(s) 204
BisI GCNGC 3 cut(s) 26, 29, 435
BlsI GCNGC 3 cut(s) 27, 30, 436
Bme1390I CCNGG 1 cut(s) 88
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 88
BmsI GCATC 1 cut(s) 108
BplI GAGNNNNNCTC 2 cut(s) 88, 120
BpmI CTGGAG 1 cut(s) 395
Bpu14I TTCGAA 1 cut(s) 177
BsaBI GATNNNNATC 1 cut(s) 360
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 263
BsaWI WCCGGW 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 134
Bse8I GATNNNNATC 1 cut(s) 360
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 263
BseGI GGATG 1 cut(s) 361
BseJI GATNNNNATC 1 cut(s) 360
BseLI CCNNNNNNNGG 1 cut(s) 93
BseMI GCAATG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 421
BsgI GTGCAG 1 cut(s) 420
Bsh1236I CGCG 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 216
BsiSI CCGG 1 cut(s) 41
BsiWI CGTACG 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 413
Bsp119I TTCGAA 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 2 cut(s) 348, 361
Bsp19I CCATGG 1 cut(s) 263
BspACI CCGC 2 cut(s) 25, 28
BspFNI CGCG 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 39
BspPI GGATC 1 cut(s) 356
BspT104I TTCGAA 1 cut(s) 177
BsrBI CCGCTC 1 cut(s) 25
BsrDI GCAATG 1 cut(s) 134
BssECI CCNNGG 1 cut(s) 263
BssMI GATC 2 cut(s) 348, 361
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 263
Bst2UI CCWGG 1 cut(s) 88
Bst4CI ACNGT 1 cut(s) 205
BstACI GRCGYC 1 cut(s) 57
BstBI TTCGAA 1 cut(s) 177
BstDSI CCRYGG 1 cut(s) 263
BstF5I GGATG 1 cut(s) 361
BstFNI CGCG 1 cut(s) 49
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 2 cut(s) 351, 364
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 2 cut(s) 348, 361
BstMWI GCNNNNNNNGC 2 cut(s) 22, 206
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BstSFI CTRYAG 1 cut(s) 204
BstUI CGCG 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 421
BtgI CCRYGG 1 cut(s) 263
BtsCI GGATG 1 cut(s) 361
CaiI CAGNNNCTG 2 cut(s) 203, 434
CfoI GCGC 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 84
CseI GACGC 1 cut(s) 55
Csp6I GTAC 2 cut(s) 80, 372
CviAII CATG 3 cut(s) 185, 264, 299
CviJI RGCY 8 cut(s) 16, 38, 125, 160, 168, 214, 313, 415
CviKI_1 RGCY 8 cut(s) 16, 38, 125, 160, 168, 214, 313, 415
CviQI GTAC 2 cut(s) 80, 372
DpnI GATC 2 cut(s) 350, 363
DpnII GATC 2 cut(s) 348, 361
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 263
EcoT22I ATGCAT 1 cut(s) 457
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 263
FaeI CATG 3 cut(s) 188, 267, 302
FatI CATG 3 cut(s) 184, 263, 298
FauNDI CATATG 1 cut(s) 457
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 3 cut(s) 26, 29, 435
FokI GGATG 1 cut(s) 368
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 3 cut(s) 26, 29, 435
FspBI CTAG 2 cut(s) 122, 272
GlaI GCGC 1 cut(s) 330
GluI GCNGC 3 cut(s) 26, 29, 435
GsuI CTGGAG 1 cut(s) 395
HapII CCGG 1 cut(s) 41
HgaI GACGC 1 cut(s) 55
HhaI GCGC 1 cut(s) 331
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 3 cut(s) 188, 267, 302
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HinfI GANTC 2 cut(s) 259, 445
HpaII CCGG 1 cut(s) 41
HphI GGTGA 2 cut(s) 55, 371
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 2 cut(s) 156, 339
Hpy8I GTNNAC 1 cut(s) 240
Hpy99I CGWCG 4 cut(s) 59, 62, 133, 167
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 3 cut(s) 437, 455, 484
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 206
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 3 cut(s) 188, 267, 302
HspAI GCGC 1 cut(s) 329
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 2 cut(s) 348, 361
LmnI GCTCC 4 cut(s) 43, 90, 96, 130
LpnPI CCDG 5 cut(s) 54, 73, 79, 100, 425
Lsp1109I GCAGC 1 cut(s) 421
LweI GCATC 1 cut(s) 108
MaeI CTAG 2 cut(s) 122, 272
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 2 cut(s) 43, 267
MalI GATC 2 cut(s) 350, 363
MbiI CCGCTC 1 cut(s) 25
MboI GATC 2 cut(s) 348, 361
MboII GAAGA 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 3 cut(s) 180, 340, 473
MnlI CCTC 2 cut(s) 186, 223
Mph1103I ATGCAT 1 cut(s) 457
MseI TTAA 1 cut(s) 490
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 88
MvaI CCWGG 1 cut(s) 88
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 2 cut(s) 22, 206
NcoI CCATGG 1 cut(s) 263
NdeI CATATG 1 cut(s) 457
NdeII GATC 2 cut(s) 348, 361
NlaIII CATG 3 cut(s) 188, 267, 302
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 2 cut(s) 43, 267
NsiI ATGCAT 1 cut(s) 457
NspV TTCGAA 1 cut(s) 177
PfeI GAWTC 2 cut(s) 259, 445
Pfl23II CGTACG 1 cut(s) 79
PkrI GCNGC 3 cut(s) 27, 30, 436
Psp124BI GAGCTC 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 86
PspGI CCWGG 1 cut(s) 86
PspLI CGTACG 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 1 cut(s) 84
PstNI CAGNNNCTG 2 cut(s) 203, 434
RsaI GTAC 2 cut(s) 81, 373
RsaNI GTAC 2 cut(s) 80, 372
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 1 cut(s) 490
SatI GCNGC 3 cut(s) 26, 29, 435
Sau3AI GATC 2 cut(s) 348, 361
Sau96I GGNCC 1 cut(s) 84
ScrFI CCNGG 1 cut(s) 88
SduI GDGCHC 1 cut(s) 216
SetI ASST 8 cut(s) 18, 60, 127, 162, 216, 234, 307, 315
SfaNI GCATC 1 cut(s) 108
SfcI CTRYAG 1 cut(s) 204
SfuI TTCGAA 1 cut(s) 177
SinI GGWCC 1 cut(s) 84
SpeI ACTAGT 1 cut(s) 271
Sse9I AATT 3 cut(s) 180, 340, 473
SsiI CCGC 2 cut(s) 25, 28
SspMI CTAG 2 cut(s) 122, 272
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 86
StyI CCWWGG 1 cut(s) 263
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 1 cut(s) 60
TaqI TCGA 2 cut(s) 162, 177
TasI AATT 3 cut(s) 180, 340, 473
TauI GCSGC 2 cut(s) 28, 31
TfiI GAWTC 2 cut(s) 259, 445
Tru1I TTAA 1 cut(s) 490
Tru9I TTAA 1 cut(s) 490
TseFI GTSAC 2 cut(s) 43, 267
TseI GCWGC 1 cut(s) 434
Tsp45I GTSAC 2 cut(s) 43, 267
TspDTI ATGAA 1 cut(s) 173
TspGWI ACGGA 3 cut(s) 97, 117, 139
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 2 cut(s) 180, 340
XspI CTAG 2 cut(s) 122, 272
ZraI GACGTC 1 cut(s) 58
Zsp2I ATGCAT 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.