Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003298

Physical Location & Seq

Genomic Coordinates Reverse (-)

1343573 .. 1343920

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g02210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGCCGCCGCTTGCAGCCTGTTTCCGGCATCTCTATCTCCGCGGAGACTGCTCAGCAGCAGCGGTCGGAAGAACCATGCTTACCAAAAGCTGCCCCAGGAGCCGCTTACGCTCTTCGTCATCAAATTGGATGGTTCTAGCTTTGGCAGAGATTCAAGTTTCAAAGACGGCGACCGTGGCCGAACTGAACGAGGCAGTGAAAGATGTTTTTAGTCAGTCGTCGATAGATGAAATGATTTCATGGTACGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

84

Amino Acids

9.15

Weight (kDa)

8.59

Isoelectric Point (pI)

65.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02640 FvH4_6g29570
malus_domestica	MD02G1027100.v1.1 MD15G1168600.v1.1 MD17G1213000.v1.1
prunus_persica	Prupe.3G088400_v2.0.a1 Prupe.3G088400_v2.0.a1 Prupe.3G088400_v2.0.a1 Prupe.7G247900_v2.0.a1 Prupe.7G247900_v2.0.a1 Prupe.7G247900_v2.0.a1 Prupe.7G247900_v2.0.a1
pyrus_communis	pycom02g02210 pycom15g15040 pycom17g21800
rosa_chinensis	RchiOBHm_Chr2g0135131
rosa_laevigata	RLG00000015891 RLG00000019444
rosa_multiflora	Rmu_co8501197.1_g000001 Rmu_sc0001385.1_g000018 Rmu_sc0003543.1_g000006
rosa_roxburghii	Rroxscaffold_2G00109460 Rroxscaffold_2G00153300
rosa_rugosa	Rorug01G0478100 Rorug01G0478200 Rorug02G0323400 Rorug02G0323500.1
rosa_samantha	Rh2AG032200 Rh2AG371600 Rh2BG031300 Rh2BG379900 Rh2CG031700 Rh2CG359000 Rh2DG396500
rosa_wichuraiana	Rw0G013590 Rw2G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	42
AciI	CCGC	6 cut(s)	5, 8, 40, 42, 62, 103
AcoI	YGGCCR	1 cut(s)	177
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	155, 162
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	2 cut(s)	90, 140
AluI	AGCT	2 cut(s)	90, 140
Alw26I	GTCTC	1 cut(s)	39
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	4 cut(s)	14, 56, 59, 90
BbvI	GCAGC	4 cut(s)	26, 68, 71, 77
BccI	CCATC	1 cut(s)	124
BceAI	ACGGC	1 cut(s)	183
BciT130I	CCWGG	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	1 cut(s)	137
BisI	GCNGC	7 cut(s)	5, 8, 15, 57, 60, 91, 103
BlpI	GCTNAGC	1 cut(s)	52
BlsI	GCNGC	7 cut(s)	6, 9, 16, 58, 61, 92, 104
Bme1390I	CCNGG	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	97
BmsI	GCATC	1 cut(s)	37
Bpu1102I	GCTNAGC	1 cut(s)	52
BsaAI	YACGTR	1 cut(s)	247
BsaJI	CCNNGG	3 cut(s)	40, 95, 174
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	3 cut(s)	40, 95, 174
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	66
BseXI	GCAGC	4 cut(s)	26, 68, 71, 77
Bsh1236I	CGCG	1 cut(s)	42
Bsh1285I	CGRYCG	2 cut(s)	66, 174
BshFI	GGCC	1 cut(s)	179
BsiEI	CGRYCG	2 cut(s)	66, 174
BsiSI	CCGG	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	179
Bsp1720I	GCTNAGC	1 cut(s)	52
BspACI	CCGC	6 cut(s)	5, 8, 40, 42, 62, 103
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	1 cut(s)	65
BspFNI	CGCG	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	101
BspQI	GCTCTTC	1 cut(s)	118
BssECI	CCNNGG	3 cut(s)	40, 95, 174
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	118
BstBAI	YACGTR	1 cut(s)	247
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	52
BstDSI	CCRYGG	2 cut(s)	40, 174
BstF5I	GGATG	1 cut(s)	135
BstFNI	CGCG	1 cut(s)	42
BstMAI	GTCTC	1 cut(s)	39
BstMCI	CGRYCG	2 cut(s)	66, 174
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 99, 108, 176
BstNI	CCWGG	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	95
BstSNI	TACGTA	1 cut(s)	247
BstUI	CGCG	1 cut(s)	42
BstV1I	GCAGC	4 cut(s)	26, 68, 71, 77
BsuRI	GGCC	1 cut(s)	179
BtgI	CCRYGG	2 cut(s)	40, 174
BtsCI	GGATG	1 cut(s)	135
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	12
Cfr42I	CCGCGG	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	2 cut(s)	76, 240
CviJI	RGCY	5 cut(s)	17, 90, 102, 140, 179
CviKI_1	RGCY	5 cut(s)	17, 90, 102, 140, 179
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	1 cut(s)	52
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco105I	TACGTA	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	95
FaeI	CATG	2 cut(s)	79, 243
FaiI	YATR	3 cut(s)	77, 241, 250
FatI	CATG	2 cut(s)	75, 239
Fnu4HI	GCNGC	7 cut(s)	5, 8, 15, 57, 60, 91, 103
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	7 cut(s)	5, 8, 15, 57, 60, 91, 103
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	7 cut(s)	5, 8, 15, 57, 60, 91, 103
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	1 cut(s)	25
Hin1II	CATG	2 cut(s)	79, 243
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	1 cut(s)	25
Hpy188I	TCNGA	1 cut(s)	68
Hpy99I	CGWCG	1 cut(s)	223
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 99, 108, 176
HpyF3I	CTNAG	1 cut(s)	52
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	2 cut(s)	79, 243
KspI	CCGCGG	1 cut(s)	43
LguI	GCTCTTC	1 cut(s)	118
LmnI	GCTCC	1 cut(s)	99
LpnPI	CCDG	4 cut(s)	31, 38, 82, 109
Lsp1109I	GCAGC	4 cut(s)	26, 68, 71, 77
LweI	GCATC	1 cut(s)	37
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	1 cut(s)	246
MboII	GAAGA	2 cut(s)	81, 105
MluCI	AATT	1 cut(s)	124
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	1 cut(s)	184
MspA1I	CMGCKG	2 cut(s)	42, 62
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	97
MvnI	CGCG	1 cut(s)	42
MwoI	GCNNNNNNNGC	4 cut(s)	48, 99, 108, 176
NlaIII	CATG	2 cut(s)	79, 243
NlaIV	GGNNCC	1 cut(s)	101
PciSI	GCTCTTC	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	7 cut(s)	6, 9, 16, 58, 61, 92, 104
Ppu21I	YACGTR	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	101
PsrI	GAACNNNNNNTAC	2 cut(s)	64, 96
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SacII	CCGCGG	1 cut(s)	43
SapI	GCTCTTC	1 cut(s)	118
SatI	GCNGC	7 cut(s)	5, 8, 15, 57, 60, 91, 103
ScrFI	CCNGG	1 cut(s)	97
SetI	ASST	3 cut(s)	92, 142, 249
SfaNI	GCATC	1 cut(s)	37
Sfr303I	CCGCGG	1 cut(s)	43
SgrBI	CCGCGG	1 cut(s)	43
SnaBI	TACGTA	1 cut(s)	247
Sse9I	AATT	1 cut(s)	124
SsiI	CCGC	6 cut(s)	5, 8, 40, 42, 62, 103
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	1 cut(s)	221
TasI	AATT	1 cut(s)	124
TauI	GCSGC	3 cut(s)	7, 10, 105
TfiI	GAWTC	1 cut(s)	151
TscAI	CASTG	1 cut(s)	201
TseI	GCWGC	4 cut(s)	14, 56, 59, 90
TspDTI	ATGAA	2 cut(s)	228, 243
TspRI	CASTG	1 cut(s)	201
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.