RchiOBHm_Chr2g0135131

ATP synthesis coupled proton transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003298
Physical Location & Seq
Reverse (-)
52188880 .. 52191757
2878 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50608

Sequence Viewer

Length: 696 bp
ATGAGGGTTTTGAAGCTGATAGAGCGGCGGCGTTTGGCTCCGGTGAAGCGAAACGACGTCGTTGATGAGAACGAAGGTGTACGGAGCAGGAGCGTCACTCACTCGTATAAGAAACTAGCTCCGTCGCCATTGCTCACGCTCTCCGTTCTGAAGCTCGACGGCTCTGTTTTCGAAATTCATGTTGGGAGGACAGCGACTGTAGCAGAGCTCAAACAAGCAGTAGAGGTGGTGTTTACTTCTTCTATTAGCAAGATTCCATGGTCACTAGTTTGGGGGCATTTCTGCTTGTGCCATGTAGGTAAGAAGCTAACTAATGACAGAGCGCATATTCGGAATTTTGGGATCAAGGATGGTGATCAAATTGAATTCATTAGGCATATGTCCATCAGCAACATGCCTTTGGAAAAAGGGTCTAAGAATGAGACTGTGCCATACAAACAGCACTTAATGTTGTCATATGGATCAAGTGGTCATGAGGAGGAAGTACAGAATGGTTCAGAGGATTTTGACAATAATGTAAGTCAGGAGGACAACTCTGAGTATCCCAATAGAGCTGTGAAGGAAGGTCCTGTGCCTGACTTTAAGTTGCCTCGTTTCTGGAAAGGGTGGCTCTCCTACTCCAAGGTTGTCGAAGGTTTTAAGAGAGGGCAGGAATTATTGATTGAGATGCCTGAATTCCTCAGGAAGCGGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

231

Amino Acids

26.46

Weight (kDa)

9.13

Isoelectric Point (pI)

52.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiquitin_4 PF18036 45 - 126 2.7e-22 Ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 60
AccBSI CCGCTC 1 cut(s) 25
AciI CCGC 3 cut(s) 25, 28, 688
AclWI GGATC 2 cut(s) 350, 469
AcsI RAATTY 4 cut(s) 174, 334, 365, 674
AcuI CTGAAG 1 cut(s) 170
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 2 cut(s) 81, 486
AgsI TTSAA 2 cut(s) 13, 365
AhlI ACTAGT 1 cut(s) 265
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AluBI AGCT 6 cut(s) 16, 119, 154, 208, 307, 554
AluI AGCT 6 cut(s) 16, 119, 154, 208, 307, 554
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 416
AlwI GGATC 2 cut(s) 350, 469
AlwNI CAGNNNCTG 1 cut(s) 197
ApoI RAATTY 4 cut(s) 174, 334, 365, 674
AspLEI GCGC 1 cut(s) 325
AspS9I GGNCC 1 cut(s) 566
AsuHPI GGTGA 2 cut(s) 55, 365
AsuII TTCGAA 1 cut(s) 171
AvaII GGWCC 1 cut(s) 566
AxyI CCTNAGG 1 cut(s) 680
BanII GRGCYC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 210
BccI CCATC 2 cut(s) 344, 392
BceAI ACGGC 1 cut(s) 175
BciVI GTATCC 1 cut(s) 552
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 416
BcuI ACTAGT 1 cut(s) 265
BfaI CTAG 3 cut(s) 116, 266, 694
BfmI CTRYAG 1 cut(s) 198
BfuI GTATCC 1 cut(s) 552
BisI GCNGC 2 cut(s) 26, 29
BlsI GCNGC 2 cut(s) 27, 30
Bme18I GGWCC 1 cut(s) 566
BmgT120I GGNCC 1 cut(s) 566
BmiI GGNNCC 1 cut(s) 39
BmsI GCATC 1 cut(s) 657
BplI GAGNNNNNCTC 4 cut(s) 82, 114, 518, 550
Bpu14I TTCGAA 1 cut(s) 171
BsaBI GATNNNNATC 1 cut(s) 354
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 257, 621
BsaWI WCCGGW 1 cut(s) 40
Bse21I CCTNAGG 1 cut(s) 680
Bse3DI GCAATG 1 cut(s) 128
Bse8I GATNNNNATC 1 cut(s) 354
BseDI CCNNGG 2 cut(s) 257, 621
BseGI GGATG 1 cut(s) 355
BseJI GATNNNNATC 1 cut(s) 354
BseMI GCAATG 1 cut(s) 128
BseMII CTCAG 2 cut(s) 528, 694
BseRI GAGGAG 1 cut(s) 491
BsiHKAI GWGCWC 1 cut(s) 210
BsiSI CCGG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 416
Bsp119I TTCGAA 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 4 cut(s) 342, 355, 461, 690
Bsp19I CCATGG 1 cut(s) 257
BspACI CCGC 3 cut(s) 25, 28, 688
BspCNI CTCAG 2 cut(s) 529, 693
BspHI TCATGA 1 cut(s) 472
BspLI GGNNCC 1 cut(s) 39
BspPI GGATC 2 cut(s) 350, 469
BspT104I TTCGAA 1 cut(s) 171
BsrBI CCGCTC 1 cut(s) 25
BsrDI GCAATG 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 257, 621
BssMI GATC 4 cut(s) 342, 355, 461, 690
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 2 cut(s) 257, 621
Bst4CI ACNGT 2 cut(s) 199, 427
BstACI GRCGYC 1 cut(s) 57
BstBI TTCGAA 1 cut(s) 171
BstDEI CTNAG 3 cut(s) 414, 537, 680
BstDSI CCRYGG 1 cut(s) 257
BstF5I GGATG 1 cut(s) 355
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 4 cut(s) 345, 358, 464, 693
BstMAI GTCTC 1 cut(s) 416
BstMBI GATC 4 cut(s) 342, 355, 461, 690
BstMWI GCNNNNNNNGC 2 cut(s) 22, 200
BstNSI RCATGY 1 cut(s) 397
BstSFI CTRYAG 1 cut(s) 198
BstX2I RGATCY 1 cut(s) 690
BstYI RGATCY 1 cut(s) 690
Bsu36I CCTNAGG 1 cut(s) 680
BsuI GTATCC 1 cut(s) 552
BtgI CCRYGG 1 cut(s) 257
BtsCI GGATG 1 cut(s) 355
CaiI CAGNNNCTG 1 cut(s) 197
CciI TCATGA 1 cut(s) 472
CfoI GCGC 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 566
CseI GACGC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 80, 485
CviAII CATG 5 cut(s) 179, 258, 293, 394, 473
CviJI RGCY 9 cut(s) 16, 38, 119, 154, 162, 208, 307, 554, 610
CviKI_1 RGCY 9 cut(s) 16, 38, 119, 154, 162, 208, 307, 554, 610
CviQI GTAC 2 cut(s) 80, 485
DdeI CTNAG 3 cut(s) 414, 537, 680
DpnI GATC 4 cut(s) 344, 357, 463, 692
DpnII GATC 4 cut(s) 342, 355, 461, 690
Ecl136II GAGCTC 1 cut(s) 208
Eco130I CCWWGG 2 cut(s) 257, 621
Eco24I GRGCYC 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 566
Eco53kI GAGCTC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 170
Eco81I CCTNAGG 1 cut(s) 680
EcoICRI GAGCTC 1 cut(s) 208
EcoO109I RGGNCCY 1 cut(s) 566
EcoRI GAATTC 2 cut(s) 365, 674
EcoT14I CCWWGG 2 cut(s) 257, 621
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 2 cut(s) 257, 621
FaeI CATG 5 cut(s) 182, 261, 296, 397, 476
FatI CATG 5 cut(s) 178, 257, 292, 393, 472
FauNDI CATATG 2 cut(s) 378, 457
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 2 cut(s) 26, 29
FokI GGATG 1 cut(s) 362
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 2 cut(s) 26, 29
FspBI CTAG 3 cut(s) 116, 266, 694
GlaI GCGC 1 cut(s) 324
GluI GCNGC 2 cut(s) 26, 29
HapII CCGG 1 cut(s) 41
HgaI GACGC 1 cut(s) 82
HhaI GCGC 1 cut(s) 325
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 5 cut(s) 182, 261, 296, 397, 476
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HinfI GANTC 1 cut(s) 253
HpaII CCGG 1 cut(s) 41
HphI GGTGA 2 cut(s) 55, 365
Hpy166II GTNNAC 2 cut(s) 80, 234
Hpy188I TCNGA 4 cut(s) 150, 333, 499, 538
Hpy188III TCNNGA 4 cut(s) 473, 524, 598, 682
Hpy8I GTNNAC 2 cut(s) 80, 234
Hpy99I CGWCG 4 cut(s) 59, 62, 127, 161
HpyAV CCTTC 4 cut(s) 68, 553, 557, 626
HpyCH4III ACNGT 2 cut(s) 199, 427
HpyCH4IV ACGT 1 cut(s) 57
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 200
HpyF3I CTNAG 3 cut(s) 414, 537, 680
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 5 cut(s) 182, 261, 296, 397, 476
HspAI GCGC 1 cut(s) 323
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 4 cut(s) 342, 355, 461, 690
LmnI GCTCC 4 cut(s) 43, 84, 90, 124
LpnPI CCDG 9 cut(s) 54, 73, 509, 582, 583, 588, 635, 667, 684
LweI GCATC 1 cut(s) 657
MaeI CTAG 3 cut(s) 116, 266, 694
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 2 cut(s) 94, 261
MalI GATC 4 cut(s) 344, 357, 463, 692
MbiI CCGCTC 1 cut(s) 25
MboI GATC 4 cut(s) 342, 355, 461, 690
MboII GAAGA 1 cut(s) 231
MflI RGATCY 1 cut(s) 690
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 6 cut(s) 174, 334, 360, 365, 653, 674
MnlI CCTC 9 cut(s) 180, 217, 469, 472, 493, 520, 600, 638, 689
MseI TTAA 3 cut(s) 446, 582, 639
MspI CCGG 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 22, 200
NcoI CCATGG 1 cut(s) 257
NdeI CATATG 2 cut(s) 378, 457
NdeII GATC 4 cut(s) 342, 355, 461, 690
NlaIII CATG 5 cut(s) 182, 261, 296, 397, 476
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 2 cut(s) 94, 261
NspI RCATGY 1 cut(s) 397
NspV TTCGAA 1 cut(s) 171
PagI TCATGA 1 cut(s) 472
PfeI GAWTC 1 cut(s) 253
PkrI GCNGC 2 cut(s) 27, 30
PpuMI RGGWCCY 1 cut(s) 566
Psp124BI GAGCTC 1 cut(s) 210
Psp5II RGGWCCY 1 cut(s) 566
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 1 cut(s) 566
PspPPI RGGWCCY 1 cut(s) 566
PstNI CAGNNNCTG 1 cut(s) 197
PsuI RGATCY 1 cut(s) 690
RsaI GTAC 2 cut(s) 81, 486
RsaNI GTAC 2 cut(s) 80, 485
SacI GAGCTC 1 cut(s) 210
SaqAI TTAA 3 cut(s) 446, 582, 639
SatI GCNGC 2 cut(s) 26, 29
Sau3AI GATC 4 cut(s) 342, 355, 461, 690
Sau96I GGNCC 1 cut(s) 566
SduI GDGCHC 1 cut(s) 210
SfaNI GCATC 1 cut(s) 657
SfcI CTRYAG 1 cut(s) 198
SfuI TTCGAA 1 cut(s) 171
SinI GGWCC 1 cut(s) 566
SpeI ACTAGT 1 cut(s) 265
Sse9I AATT 6 cut(s) 174, 334, 360, 365, 653, 674
SsiI CCGC 3 cut(s) 25, 28, 688
SspMI CTAG 3 cut(s) 116, 266, 694
SstI GAGCTC 1 cut(s) 210
StyI CCWWGG 2 cut(s) 257, 621
TaaI ACNGT 2 cut(s) 199, 427
TaiI ACGT 1 cut(s) 60
TaqI TCGA 3 cut(s) 156, 171, 630
TasI AATT 6 cut(s) 174, 334, 360, 365, 653, 674
TatI WGTACW 1 cut(s) 484
TauI GCSGC 2 cut(s) 28, 31
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 3 cut(s) 446, 582, 639
Tru9I TTAA 3 cut(s) 446, 582, 639
TseFI GTSAC 2 cut(s) 94, 261
Tsp45I GTSAC 2 cut(s) 94, 261
TspDTI ATGAA 2 cut(s) 167, 358
TspGWI ACGGA 3 cut(s) 97, 111, 133
VpaK11BI GGWCC 1 cut(s) 566
XapI RAATTY 4 cut(s) 174, 334, 365, 674
XceI RCATGY 1 cut(s) 397
XspI CTAG 3 cut(s) 116, 266, 694
ZraI GACGTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.