Rroxscaffold_2G00109460

ATP synthesis coupled proton transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003298
Physical Location & Seq
Forward (+)
33655467 .. 33658403
2937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00109460.1

Sequence Viewer

Length: 726 bp
ATGAGGGTTTTGAAGCTGATAGAGAAGCGGCGTTTGGCTCCGGTGACGCGAAACGAAGTCGTTGATGAGAACGAAGGTGTACGGAGCAGGAGGAGGAGCATCACTCACTCGTATAAGAAACTAGCTCCGTCGCCATTGCTCACGCTCTCCGTTCTGAAGCTCGACGGCTCTGTTTTCGAAATTCATGTTGGGAGGACAGCGACTGTAGCGGAGCTCAAACAAGCAGTAGAGGTGGTGTTTACTTCTTCTATTAGCAAGATTCCATGGTCACTAGTTTGGGGGCATTTCTGCTTGTGCCATGTAGGTAAGAAGCTAACTAATGACAGAGCGCATATTCGGAATTTTGGGATCAAGGATGGTGATCAAATTGAATTCATTAAGCATATGTCCATCAGCAACATGCCTTTGGAAAAAGGGTCTAAGAATGAGACTGTGCCGTACAAACAGCACTTAATACAAGCTCTGGCATCAGGGTTGTCATATGGATCAAGTGATGATCATGAGGAGGAAGTAGAGAATGGTTCAGAGGATTTTGACAATAATGTAAGTCAGGAGGACAACTCTGAGTATCATCCCAATAGAGCTGTGAAGGAAGGTCCTGTGCCTGCATTTAAGTTGCCTCGTTTCTGGAAAGGGTGGCTCTCATACTCCAAGGTTGTCGAAGGTTTTAAGAGAGGGCAGGAATTATTGATTGAGATGCCTGAATTCCTCAGGAAGCGAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

241

Amino Acids

27.5

Weight (kDa)

8.95

Isoelectric Point (pI)

53.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiquitin_4 PF18036 47 - 129 1.5e-22 Ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 49
AciI CCGC 2 cut(s) 28, 209
AclWI GGATC 2 cut(s) 356, 493
AcsI RAATTY 4 cut(s) 180, 340, 371, 704
AcuI CTGAAG 1 cut(s) 176
AfaI GTAC 2 cut(s) 81, 440
AgsI TTSAA 2 cut(s) 13, 371
AhlI ACTAGT 1 cut(s) 271
AjuI GAANNNNNNNTTGG 4 cut(s) 17, 49, 171, 203
AluBI AGCT 7 cut(s) 16, 125, 160, 214, 313, 461, 584
AluI AGCT 7 cut(s) 16, 125, 160, 214, 313, 461, 584
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 2 cut(s) 356, 493
AlwNI CAGNNNCTG 1 cut(s) 203
ApoI RAATTY 4 cut(s) 180, 340, 371, 704
AspLEI GCGC 1 cut(s) 331
AspS9I GGNCC 1 cut(s) 596
AsuHPI GGTGA 2 cut(s) 55, 371
AsuII TTCGAA 1 cut(s) 177
AvaII GGWCC 1 cut(s) 596
AxyI CCTNAGG 1 cut(s) 710
BanII GRGCYC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 216
BccI CCATC 2 cut(s) 350, 398
BceAI ACGGC 2 cut(s) 181, 421
BclI TGATCA 2 cut(s) 361, 496
BcoDI GTCTC 1 cut(s) 422
BcuI ACTAGT 1 cut(s) 271
BfaI CTAG 3 cut(s) 122, 272, 724
BfmI CTRYAG 1 cut(s) 204
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
Bme18I GGWCC 1 cut(s) 596
BmgT120I GGNCC 1 cut(s) 596
BmiI GGNNCC 1 cut(s) 39
BmsI GCATC 3 cut(s) 108, 476, 687
BplI GAGNNNNNCTC 4 cut(s) 88, 120, 545, 577
Bpu14I TTCGAA 1 cut(s) 177
BsaBI GATNNNNATC 1 cut(s) 360
BsaJI CCNNGG 2 cut(s) 263, 651
BsaWI WCCGGW 1 cut(s) 40
Bse21I CCTNAGG 1 cut(s) 710
Bse3DI GCAATG 1 cut(s) 134
Bse8I GATNNNNATC 1 cut(s) 360
BseDI CCNNGG 2 cut(s) 263, 651
BseGI GGATG 2 cut(s) 361, 571
BseJI GATNNNNATC 1 cut(s) 360
BseMI GCAATG 1 cut(s) 134
BseMII CTCAG 2 cut(s) 555, 724
BseRI GAGGAG 3 cut(s) 106, 109, 518
Bsh1236I CGCG 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 216
BsiSI CCGG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 422
Bsp119I TTCGAA 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 4 cut(s) 348, 361, 485, 496
Bsp19I CCATGG 1 cut(s) 263
BspACI CCGC 2 cut(s) 28, 209
BspCNI CTCAG 2 cut(s) 556, 723
BspFNI CGCG 1 cut(s) 49
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 1 cut(s) 39
BspPI GGATC 2 cut(s) 356, 493
BspT104I TTCGAA 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 263, 651
BssMI GATC 4 cut(s) 348, 361, 485, 496
BssT1I CCWWGG 2 cut(s) 263, 651
Bst4CI ACNGT 2 cut(s) 205, 433
BstBI TTCGAA 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 606
BstDEI CTNAG 3 cut(s) 420, 564, 710
BstDSI CCRYGG 1 cut(s) 263
BstF5I GGATG 2 cut(s) 361, 571
BstFNI CGCG 1 cut(s) 49
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 4 cut(s) 351, 364, 488, 499
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 4 cut(s) 348, 361, 485, 496
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 403
BstSFI CTRYAG 1 cut(s) 204
BstUI CGCG 1 cut(s) 49
Bsu36I CCTNAGG 1 cut(s) 710
BtgI CCRYGG 1 cut(s) 263
BtsCI GGATG 2 cut(s) 361, 571
Cac8I GCNNGC 1 cut(s) 606
CaiI CAGNNNCTG 1 cut(s) 203
CciI TCATGA 1 cut(s) 499
CfoI GCGC 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 596
CseI GACGC 1 cut(s) 55
Csp6I GTAC 2 cut(s) 80, 439
CviAII CATG 5 cut(s) 185, 264, 299, 400, 500
CviQI GTAC 2 cut(s) 80, 439
DdeI CTNAG 3 cut(s) 420, 564, 710
DpnI GATC 4 cut(s) 350, 363, 487, 498
DpnII GATC 4 cut(s) 348, 361, 485, 496
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 2 cut(s) 263, 651
Eco24I GRGCYC 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 596
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 176
Eco81I CCTNAGG 1 cut(s) 710
EcoICRI GAGCTC 1 cut(s) 214
EcoO109I RGGNCCY 1 cut(s) 596
EcoRI GAATTC 2 cut(s) 371, 704
EcoT14I CCWWGG 2 cut(s) 263, 651
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 2 cut(s) 263, 651
FaeI CATG 5 cut(s) 188, 267, 302, 403, 503
FatI CATG 5 cut(s) 184, 263, 298, 399, 499
FauNDI CATATG 2 cut(s) 384, 481
FbaI TGATCA 2 cut(s) 361, 496
Fnu4HI GCNGC 1 cut(s) 29
FokI GGATG 2 cut(s) 368, 558
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 29
FspBI CTAG 3 cut(s) 122, 272, 724
GlaI GCGC 1 cut(s) 330
GluI GCNGC 1 cut(s) 29
HapII CCGG 1 cut(s) 41
HgaI GACGC 1 cut(s) 55
HhaI GCGC 1 cut(s) 331
Hin1II CATG 5 cut(s) 188, 267, 302, 403, 503
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HinfI GANTC 2 cut(s) 259, 720
HpaII CCGG 1 cut(s) 41
HphI GGTGA 2 cut(s) 55, 371
Hpy166II GTNNAC 2 cut(s) 80, 240
Hpy188I TCNGA 4 cut(s) 156, 339, 526, 565
Hpy188III TCNNGA 4 cut(s) 500, 551, 628, 712
Hpy8I GTNNAC 2 cut(s) 80, 240
Hpy99I CGWCG 2 cut(s) 133, 167
HpyAV CCTTC 4 cut(s) 68, 583, 587, 656
HpyCH4III ACNGT 2 cut(s) 205, 433
HpyCH4V TGCA 1 cut(s) 608
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 3 cut(s) 420, 564, 710
Hsp92II CATG 5 cut(s) 188, 267, 302, 403, 503
HspAI GCGC 1 cut(s) 329
Ksp22I TGATCA 2 cut(s) 361, 496
Kzo9I GATC 4 cut(s) 348, 361, 485, 496
LmnI GCTCC 5 cut(s) 43, 84, 96, 130, 211
LweI GCATC 3 cut(s) 108, 476, 687
MaeI CTAG 3 cut(s) 122, 272, 724
MaeIII GTNAC 2 cut(s) 43, 267
MalI GATC 4 cut(s) 350, 363, 487, 498
MboI GATC 4 cut(s) 348, 361, 485, 496
MboII GAAGA 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 6 cut(s) 180, 340, 366, 371, 683, 704
MseI TTAA 4 cut(s) 378, 452, 612, 669
MspI CCGG 1 cut(s) 41
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 1 cut(s) 206
NcoI CCATGG 1 cut(s) 263
NdeI CATATG 2 cut(s) 384, 481
NdeII GATC 4 cut(s) 348, 361, 485, 496
NlaIII CATG 5 cut(s) 188, 267, 302, 403, 503
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 2 cut(s) 43, 267
NspI RCATGY 1 cut(s) 403
NspV TTCGAA 1 cut(s) 177
PagI TCATGA 1 cut(s) 499
PfeI GAWTC 2 cut(s) 259, 720
PkrI GCNGC 1 cut(s) 30
PpuMI RGGWCCY 1 cut(s) 596
Psp124BI GAGCTC 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 596
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 1 cut(s) 596
PspPPI RGGWCCY 1 cut(s) 596
PstNI CAGNNNCTG 1 cut(s) 203
RsaI GTAC 2 cut(s) 81, 440
RsaNI GTAC 2 cut(s) 80, 439
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 4 cut(s) 378, 452, 612, 669
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 4 cut(s) 348, 361, 485, 496
Sau96I GGNCC 1 cut(s) 596
SduI GDGCHC 1 cut(s) 216
SfaNI GCATC 3 cut(s) 108, 476, 687
SfcI CTRYAG 1 cut(s) 204
SfuI TTCGAA 1 cut(s) 177
SinI GGWCC 1 cut(s) 596
SpeI ACTAGT 1 cut(s) 271
Sse9I AATT 6 cut(s) 180, 340, 366, 371, 683, 704
SsiI CCGC 2 cut(s) 28, 209
SspMI CTAG 3 cut(s) 122, 272, 724
SstI GAGCTC 1 cut(s) 216
StyI CCWWGG 2 cut(s) 263, 651
TaaI ACNGT 2 cut(s) 205, 433
TaqI TCGA 3 cut(s) 162, 177, 660
TasI AATT 6 cut(s) 180, 340, 366, 371, 683, 704
TauI GCSGC 1 cut(s) 31
TfiI GAWTC 2 cut(s) 259, 720
Tru1I TTAA 4 cut(s) 378, 452, 612, 669
Tru9I TTAA 4 cut(s) 378, 452, 612, 669
TseFI GTSAC 2 cut(s) 43, 267
Tsp45I GTSAC 2 cut(s) 43, 267
TspDTI ATGAA 2 cut(s) 173, 364
TspGWI ACGGA 3 cut(s) 97, 117, 139
VpaK11BI GGWCC 1 cut(s) 596
XapI RAATTY 4 cut(s) 180, 340, 371, 704
XceI RCATGY 1 cut(s) 403
XspI CTAG 3 cut(s) 122, 272, 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.