MD15G1168600.v1.1

ATP synthesis coupled proton transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0003298
Physical Location & Seq
Reverse (-)
12957417 .. 12962609
5193 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1168600.v1.1.491

Sequence Viewer

Length: 405 bp
ATGCGCATGAAAATGGACGTGGGTATTTGTGAACAAGAGTTGGCGACGAATGCCACCGCATGCAGCCTGTTTCCAGCATCACTATCTCCACGGAGACTTCTCAGCGGCAGCGGTCGGAAGAACCATGCTTACCGAAAGCTGCCCCAGGAGCCGCTTAAGCTTTTTGTCATCAAATTGGATGGCTCTAGCTTTGAGATTCAAGTTTCTATGACAGCCACGGTAGCCGAACTGAAAGAGGCAGTGAAGGATGTTTTCAGTCAGTCGCCGATGCATGAAATGATTTCATGGTACATATTTTTTGTTCAACATGCTTCAATTAAGTATGAGCGGGAAAAGCGACGGATAGGGTTGTGGAGGAAAAGGATATGTGACATCCCTGCTTATGAACAGCTAGTGAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

135

Amino Acids

15.47

Weight (kDa)

9.51

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiquitin_4 PF18036 52 - 97 4.6e-07 Ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AccBSI CCGCTC 1 cut(s) 328
AciI CCGC 5 cut(s) 57, 105, 111, 152, 328
AfaI GTAC 1 cut(s) 290
AflII CTTAAG 1 cut(s) 155
AgsI TTSAA 3 cut(s) 200, 305, 315
AjiI CACGTC 1 cut(s) 19
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 4 cut(s) 139, 160, 189, 391
AluI AGCT 4 cut(s) 139, 160, 189, 391
Alw26I GTCTC 1 cut(s) 88
ApeKI GCWGC 3 cut(s) 63, 108, 139
AspLEI GCGC 1 cut(s) 6
BbvI GCAGC 3 cut(s) 75, 120, 126
BccI CCATC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 2 cut(s) 186, 392
BfrI CTTAAG 1 cut(s) 155
BisI GCNGC 5 cut(s) 64, 106, 109, 140, 152
BlsI GCNGC 5 cut(s) 65, 107, 110, 141, 153
Bme1390I CCNGG 1 cut(s) 146
BmgBI CACGTC 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 2 cut(s) 86, 258
BsaJI CCNNGG 3 cut(s) 89, 144, 216
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 3 cut(s) 89, 144, 216
BseGI GGATG 3 cut(s) 184, 253, 372
BseMII CTCAG 1 cut(s) 115
BseXI GCAGC 3 cut(s) 75, 120, 126
Bsh1285I CGRYCG 1 cut(s) 115
BsiEI CGRYCG 1 cut(s) 115
BsmAI GTCTC 1 cut(s) 88
BsmI GAATGC 1 cut(s) 55
BspACI CCGC 5 cut(s) 57, 105, 111, 152, 328
BspCNI CTCAG 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 150
BspTI CTTAAG 1 cut(s) 155
BsrBI CCGCTC 1 cut(s) 328
BssECI CCNNGG 3 cut(s) 89, 144, 216
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 220
BstAFI CTTAAG 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 101
BstDSI CCRYGG 2 cut(s) 89, 216
BstF5I GGATG 3 cut(s) 184, 253, 372
BstHHI GCGC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 88
BstMCI CGRYCG 1 cut(s) 115
BstMWI GCNNNNNNNGC 5 cut(s) 50, 148, 157, 221, 334
BstNI CCWGG 1 cut(s) 146
BstNSI RCATGY 2 cut(s) 63, 311
BstSCI CCNGG 1 cut(s) 144
BstV1I GCAGC 3 cut(s) 75, 120, 126
BtgI CCRYGG 2 cut(s) 89, 216
BtrI CACGTC 1 cut(s) 19
BtsCI GGATG 3 cut(s) 184, 253, 372
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 246
Cac8I GCNNGC 1 cut(s) 61
CfoI GCGC 1 cut(s) 6
Csp6I GTAC 1 cut(s) 289
CviAII CATG 6 cut(s) 7, 60, 125, 272, 285, 308
CviJI RGCY 9 cut(s) 66, 139, 151, 160, 183, 189, 215, 224, 391
CviKI_1 RGCY 9 cut(s) 66, 139, 151, 160, 183, 189, 215, 224, 391
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 144
EcoT22I ATGCAT 1 cut(s) 273
FaeI CATG 6 cut(s) 10, 63, 128, 275, 288, 311
FatI CATG 6 cut(s) 6, 59, 124, 271, 284, 307
FauI CCCGC 1 cut(s) 321
Fnu4HI GCNGC 5 cut(s) 64, 106, 109, 140, 152
FokI GGATG 3 cut(s) 191, 260, 359
Fsp4HI GCNGC 5 cut(s) 64, 106, 109, 140, 152
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 2 cut(s) 186, 392
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 5 cut(s) 64, 106, 109, 140, 152
HhaI GCGC 1 cut(s) 6
Hin1II CATG 6 cut(s) 10, 63, 128, 275, 288, 311
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 1 cut(s) 117
Hpy8I GTNNAC 1 cut(s) 32
Hpy99I CGWCG 2 cut(s) 49, 342
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 2 cut(s) 63, 271
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 148, 157, 221, 334
HpyF3I CTNAG 1 cut(s) 101
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 6 cut(s) 10, 63, 128, 275, 288, 311
HspAI GCGC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 5 cut(s) 80, 87, 131, 158, 390
Lsp1109I GCAGC 3 cut(s) 75, 120, 126
LweI GCATC 2 cut(s) 86, 258
MaeI CTAG 2 cut(s) 186, 392
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 368
MbiI CCGCTC 1 cut(s) 328
MboII GAAGA 1 cut(s) 130
MluCI AATT 2 cut(s) 173, 315
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 2 cut(s) 229, 348
Mph1103I ATGCAT 1 cut(s) 273
MseI TTAA 2 cut(s) 156, 318
MslI CAYNNNNRTG 1 cut(s) 11
MspA1I CMGCKG 2 cut(s) 105, 111
MspCI CTTAAG 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 146
Mva1269I GAATGC 1 cut(s) 55
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 5 cut(s) 50, 148, 157, 221, 334
NlaIII CATG 6 cut(s) 10, 63, 128, 275, 288, 311
NlaIV GGNNCC 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 368
NsbI TGCGCA 1 cut(s) 5
NsiI ATGCAT 1 cut(s) 273
NspI RCATGY 2 cut(s) 63, 311
PaeI GCATGC 1 cut(s) 63
PctI GAATGC 1 cut(s) 55
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 5 cut(s) 65, 107, 110, 141, 153
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 150
PsrI GAACNNNNNNTAC 2 cut(s) 113, 145
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
RseI CAYNNNNRTG 1 cut(s) 11
SaqAI TTAA 2 cut(s) 156, 318
SatI GCNGC 5 cut(s) 64, 106, 109, 140, 152
ScrFI CCNGG 1 cut(s) 146
SetI ASST 5 cut(s) 21, 141, 162, 191, 393
SfaNI GCATC 2 cut(s) 86, 258
SmiMI CAYNNNNRTG 1 cut(s) 11
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
SphI GCATGC 1 cut(s) 63
Sse9I AATT 2 cut(s) 173, 315
SsiI CCGC 5 cut(s) 57, 105, 111, 152, 328
SspMI CTAG 2 cut(s) 186, 392
StyD4I CCNGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 1 cut(s) 21
TasI AATT 2 cut(s) 173, 315
TauI GCSGC 2 cut(s) 108, 154
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 2 cut(s) 156, 318
Tru9I TTAA 2 cut(s) 156, 318
TscAI CASTG 1 cut(s) 246
TseFI GTSAC 1 cut(s) 368
TseI GCWGC 3 cut(s) 63, 108, 139
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 4 cut(s) 23, 273, 288, 399
TspGWI ACGGA 2 cut(s) 106, 355
TspRI CASTG 1 cut(s) 246
Vha464I CTTAAG 1 cut(s) 155
XceI RCATGY 2 cut(s) 63, 311
XspI CTAG 2 cut(s) 186, 392
Zsp2I ATGCAT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.