FvH4_6g29570

ATP synthesis coupled proton transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003298
Physical Location & Seq
Reverse (-)
22820799 .. 22823772
2974 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g29570.t1

Sequence Viewer

Length: 639 bp
ATGCGACTTTTGAAGCTGATAGAGCGGCGGCGTTTGTCTCCGCTGACGCGAAACGACGTCGTCGATGACCGGAGGAGGAGCATGGCTCACTCTTATAAGAAACTAGCGCCGTCGCCGCTGCTCACACTCTCCGTTCTGAAACTCGACGGCTCTGTTTTCGAGATTCAGGTTGGGAGGAGTGCGACTGTAGCAGAGCTGAAACAAGCAGTAGAGGTGGTGTTTTCTTCTTCGAACAGCAAGGTTCCATGGTTACTAGTTTGGGGGCATTTCTGCTTGTGCCATGTAGGGAAGAAGCTAACTAATGACAGAGCGCATATTCGGAATTTTGGGATCAAGGATGGTGATCAAATTGAATTCATTAGGCATATGTCCATCAGCAACATGCCTTTCGAAAAAGGGTCTAAGAAGGAGAGTGCACCTTACAAACAGAAGTTAATGTTGACATATGGATCAAATGATCATGAGACAAAAGAAGAGCATGGTTCAGAGGATTTTGACAATAATGTCAGTCAGGAGGATGACTCTGGGGATCATCCCAATATAGATATGGAGGAAGGTCCTATGCCTGAATTCAAGTTGCCTCGTTTCTGGAAAGGGTGGCTCTCATACTCCAAGGTTGTTGGAGCTTGGAGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

213

Amino Acids

24.38

Weight (kDa)

8.78

Isoelectric Point (pI)

55.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiquitin_4 PF18036 41 - 122 4.3e-22 Ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 96
AasI GACNNNNNNGTC 1 cut(s) 503
AatII GACGTC 1 cut(s) 60
AccBSI CCGCTC 1 cut(s) 25
AccII CGCG 1 cut(s) 49
AciI CCGC 4 cut(s) 25, 28, 41, 116
AclWI GGATC 3 cut(s) 338, 457, 537
AcsI RAATTY 3 cut(s) 322, 353, 569
AcyI GRCGYC 1 cut(s) 57
AgsI TTSAA 3 cut(s) 13, 353, 574
AhlI ACTAGT 1 cut(s) 253
AluBI AGCT 4 cut(s) 16, 196, 295, 626
AluI AGCT 4 cut(s) 16, 196, 295, 626
Alw21I GWGCWC 1 cut(s) 418
Alw26I GTCTC 2 cut(s) 42, 458
Alw44I GTGCAC 1 cut(s) 414
AlwI GGATC 3 cut(s) 338, 457, 537
ApaLI GTGCAC 1 cut(s) 414
ApeKI GCWGC 1 cut(s) 118
ApoI RAATTY 3 cut(s) 322, 353, 569
AspLEI GCGC 2 cut(s) 109, 313
AspS9I GGNCC 1 cut(s) 557
AsuHPI GGTGA 1 cut(s) 353
AsuII TTCGAA 2 cut(s) 230, 390
AvaII GGWCC 1 cut(s) 557
BaeGI GKGCMC 1 cut(s) 418
Bbv12I GWGCWC 1 cut(s) 418
BbvI GCAGC 1 cut(s) 105
BccI CCATC 2 cut(s) 332, 380
BceAI ACGGC 2 cut(s) 94, 163
BclI TGATCA 2 cut(s) 343, 457
BcoDI GTCTC 2 cut(s) 42, 458
BcuI ACTAGT 1 cut(s) 253
BfaI CTAG 2 cut(s) 104, 254
BfmI CTRYAG 1 cut(s) 186
BfoI RGCGCY 1 cut(s) 110
BisI GCNGC 4 cut(s) 26, 29, 116, 119
BlsI GCNGC 4 cut(s) 27, 30, 117, 120
Bme18I GGWCC 1 cut(s) 557
BmgT120I GGNCC 1 cut(s) 557
BmiI GGNNCC 1 cut(s) 243
BplI GAGNNNNNCTC 4 cut(s) 70, 102, 506, 538
Bpu14I TTCGAA 2 cut(s) 230, 390
BsaBI GATNNNNATC 1 cut(s) 342
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 245, 612
BsaWI WCCGGW 1 cut(s) 69
Bse8I GATNNNNATC 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 245, 612
BseGI GGATG 3 cut(s) 343, 523, 532
BseJI GATNNNNATC 1 cut(s) 342
BseRI GAGGAG 3 cut(s) 88, 91, 190
BseSI GKGCMC 1 cut(s) 418
BseXI GCAGC 1 cut(s) 105
Bsh1236I CGCG 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 418
BsiSI CCGG 1 cut(s) 70
BsmAI GTCTC 2 cut(s) 42, 458
Bsp119I TTCGAA 2 cut(s) 230, 390
Bsp1286I GDGCHC 1 cut(s) 418
Bsp143I GATC 5 cut(s) 330, 343, 449, 457, 529
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 4 cut(s) 25, 28, 41, 116
BspFNI CGCG 1 cut(s) 49
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 1 cut(s) 243
BspPI GGATC 3 cut(s) 338, 457, 537
BspQI GCTCTTC 1 cut(s) 468
BspT104I TTCGAA 2 cut(s) 230, 390
BsrBI CCGCTC 1 cut(s) 25
BssECI CCNNGG 2 cut(s) 245, 612
BssMI GATC 5 cut(s) 330, 343, 449, 457, 529
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 2 cut(s) 245, 612
Bst4CI ACNGT 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 468
BstACI GRCGYC 1 cut(s) 57
BstBI TTCGAA 2 cut(s) 230, 390
BstDEI CTNAG 1 cut(s) 402
BstDSI CCRYGG 1 cut(s) 245
BstF5I GGATG 3 cut(s) 343, 523, 532
BstFNI CGCG 1 cut(s) 49
BstH2I RGCGCY 1 cut(s) 110
BstHHI GCGC 2 cut(s) 109, 313
BstKTI GATC 5 cut(s) 333, 346, 452, 460, 532
BstMAI GTCTC 2 cut(s) 42, 458
BstMBI GATC 5 cut(s) 330, 343, 449, 457, 529
BstMWI GCNNNNNNNGC 3 cut(s) 22, 115, 188
BstNSI RCATGY 1 cut(s) 385
BstSFI CTRYAG 1 cut(s) 186
BstSLI GKGCMC 1 cut(s) 418
BstUI CGCG 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 105
BtgI CCRYGG 1 cut(s) 245
BtsCI GGATG 3 cut(s) 343, 523, 532
CciI TCATGA 1 cut(s) 460
CfoI GCGC 2 cut(s) 109, 313
Cfr13I GGNCC 1 cut(s) 557
CseI GACGC 1 cut(s) 55
CviAII CATG 6 cut(s) 82, 246, 281, 382, 461, 479
CviJI RGCY 7 cut(s) 16, 86, 150, 196, 295, 601, 626
CviKI_1 RGCY 7 cut(s) 16, 86, 150, 196, 295, 601, 626
DdeI CTNAG 1 cut(s) 402
DpnI GATC 5 cut(s) 332, 345, 451, 459, 531
DpnII GATC 5 cut(s) 330, 343, 449, 457, 529
DrdI GACNNNNNNGTC 1 cut(s) 503
DseDI GACNNNNNNGTC 1 cut(s) 503
Eam1104I CTCTTC 1 cut(s) 468
EarI CTCTTC 1 cut(s) 468
Eco130I CCWWGG 2 cut(s) 245, 612
Eco47I GGWCC 1 cut(s) 557
EcoO109I RGGNCCY 1 cut(s) 557
EcoRI GAATTC 2 cut(s) 353, 569
EcoT14I CCWWGG 2 cut(s) 245, 612
ErhI CCWWGG 2 cut(s) 245, 612
FaeI CATG 6 cut(s) 85, 249, 284, 385, 464, 482
FatI CATG 6 cut(s) 81, 245, 280, 381, 460, 478
FauNDI CATATG 2 cut(s) 366, 445
FbaI TGATCA 2 cut(s) 343, 457
Fnu4HI GCNGC 4 cut(s) 26, 29, 116, 119
FokI GGATG 3 cut(s) 350, 519, 530
Fsp4HI GCNGC 4 cut(s) 26, 29, 116, 119
FspBI CTAG 2 cut(s) 104, 254
GlaI GCGC 2 cut(s) 108, 312
GluI GCNGC 4 cut(s) 26, 29, 116, 119
HaeII RGCGCY 1 cut(s) 110
HapII CCGG 1 cut(s) 70
HgaI GACGC 1 cut(s) 55
HhaI GCGC 2 cut(s) 109, 313
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 6 cut(s) 85, 249, 284, 385, 464, 482
Hin6I GCGC 2 cut(s) 107, 311
HinP1I GCGC 2 cut(s) 107, 311
HincII GTYRAC 1 cut(s) 441
HindII GTYRAC 1 cut(s) 441
HinfI GANTC 2 cut(s) 163, 521
HpaII CCGG 1 cut(s) 70
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 2 cut(s) 416, 441
Hpy188I TCNGA 3 cut(s) 138, 321, 487
Hpy188III TCNNGA 4 cut(s) 160, 461, 512, 589
Hpy8I GTNNAC 2 cut(s) 416, 441
Hpy99I CGWCG 5 cut(s) 59, 62, 65, 115, 149
HpyAV CCTTC 2 cut(s) 400, 548
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 416
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 115, 188
HpyF3I CTNAG 1 cut(s) 402
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 6 cut(s) 85, 249, 284, 385, 464, 482
HspAI GCGC 2 cut(s) 107, 311
Ksp22I TGATCA 2 cut(s) 343, 457
Kzo9I GATC 5 cut(s) 330, 343, 449, 457, 529
LguI GCTCTTC 1 cut(s) 468
LmnI GCTCC 2 cut(s) 78, 623
LpnPI CCDG 6 cut(s) 83, 152, 497, 510, 574, 579
Lsp1109I GCAGC 1 cut(s) 105
MaeI CTAG 2 cut(s) 104, 254
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 249
MalI GATC 5 cut(s) 332, 345, 451, 459, 531
MbiI CCGCTC 1 cut(s) 25
MboI GATC 5 cut(s) 330, 343, 449, 457, 529
MboII GAAGA 4 cut(s) 216, 219, 301, 485
MhlI GDGCHC 1 cut(s) 418
MluCI AATT 4 cut(s) 322, 348, 353, 569
MlyI GAGTC 1 cut(s) 515
MmeI TCCRAC 1 cut(s) 601
MnlI CCTC 9 cut(s) 66, 69, 168, 205, 481, 508, 544, 591, 624
MseI TTAA 2 cut(s) 434, 637
MspA1I CMGCKG 2 cut(s) 43, 118
MspI CCGG 1 cut(s) 70
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 3 cut(s) 22, 115, 188
NcoI CCATGG 1 cut(s) 245
NdeI CATATG 2 cut(s) 366, 445
NdeII GATC 5 cut(s) 330, 343, 449, 457, 529
NlaIII CATG 6 cut(s) 85, 249, 284, 385, 464, 482
NlaIV GGNNCC 1 cut(s) 243
NspI RCATGY 1 cut(s) 385
NspV TTCGAA 2 cut(s) 230, 390
PagI TCATGA 1 cut(s) 460
PciSI GCTCTTC 1 cut(s) 468
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PfeI GAWTC 1 cut(s) 163
PflFI GACNNNGTC 1 cut(s) 59
PkrI GCNGC 4 cut(s) 27, 30, 117, 120
PleI GAGTC 1 cut(s) 515
PpsI GAGTC 1 cut(s) 515
PpuMI RGGWCCY 1 cut(s) 557
PsiI TTATAA 1 cut(s) 96
Psp5II RGGWCCY 1 cut(s) 557
PspN4I GGNNCC 1 cut(s) 243
PspPI GGNCC 1 cut(s) 557
PspPPI RGGWCCY 1 cut(s) 557
PsyI GACNNNGTC 1 cut(s) 59
SapI GCTCTTC 1 cut(s) 468
SaqAI TTAA 2 cut(s) 434, 637
SatI GCNGC 4 cut(s) 26, 29, 116, 119
Sau3AI GATC 5 cut(s) 330, 343, 449, 457, 529
Sau96I GGNCC 1 cut(s) 557
SchI GAGTC 1 cut(s) 515
SduI GDGCHC 1 cut(s) 418
SfcI CTRYAG 1 cut(s) 186
SfuI TTCGAA 2 cut(s) 230, 390
SinI GGWCC 1 cut(s) 557
SpeI ACTAGT 1 cut(s) 253
Sse9I AATT 4 cut(s) 322, 348, 353, 569
SsiI CCGC 4 cut(s) 25, 28, 41, 116
SspMI CTAG 2 cut(s) 104, 254
StyI CCWWGG 2 cut(s) 245, 612
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 1 cut(s) 60
TaqI TCGA 5 cut(s) 63, 144, 159, 230, 390
TasI AATT 4 cut(s) 322, 348, 353, 569
TauI GCSGC 3 cut(s) 28, 31, 118
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 2 cut(s) 434, 637
Tru9I TTAA 2 cut(s) 434, 637
TseI GCWGC 1 cut(s) 118
TspDTI ATGAA 1 cut(s) 346
TspGWI ACGGA 1 cut(s) 121
Tth111I GACNNNGTC 1 cut(s) 59
VneI GTGCAC 1 cut(s) 414
VpaK11BI GGWCC 1 cut(s) 557
XapI RAATTY 3 cut(s) 322, 353, 569
XceI RCATGY 1 cut(s) 385
XcmI CCANNNNNNNNNTGG 1 cut(s) 544
XspI CTAG 2 cut(s) 104, 254
ZraI GACGTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.