Rorug02G0323400

ATP synthesis coupled proton transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003298
Physical Location & Seq
Reverse (-)
39587968 .. 39590085
2118 bp
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UTR
Exon/CDS
Intron
Rorug02G0323400.1

Sequence Viewer

Length: 390 bp
ATGGTTGTTGGTATAGATCGAGCTCCAACATGGCCAACTATCTCGCTCAGTTCCAGACCATCAAGAATTCACTCGATCATCTCGATATTTCTGGATCTTGATGAGTTCAAGACCATTCTCAAACCACGGCTAAAACTAATTGTCCAAAATGATGAACGGGAATGGTTTATTGTTTTTGTATCCAAGGCACATCCAAACAATGATCAAGCCACCAAATTGTCAAATAAAGTTTATGCCAAACTTGAAGTTGATTTTAGCTCCAAGAAGAGAGAGAGGTGCTGCAAATTCGACCTATATAGTGCTGAAGAAACCTTTTGGGAAGACTTGGAATCCAAGATAATGGAGTGCATCAGAAATACATTGGATAAACCACATGAGTTTTCTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

129

Amino Acids

15.16

Weight (kDa)

6.83

Isoelectric Point (pI)

23.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPPC10_1st PF23036 31 - 117 1.7e-08 Trafficking protein particle complex subunit 10-like, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 102
AcoI YGGCCR 1 cut(s) 32
AcsI RAATTY 2 cut(s) 66, 284
AcuI CTGAAG 1 cut(s) 324
AgsI TTSAA 2 cut(s) 109, 245
AluBI AGCT 2 cut(s) 23, 258
AluI AGCT 2 cut(s) 23, 258
Alw21I GWGCWC 1 cut(s) 25
AlwI GGATC 1 cut(s) 102
AoxI GGCC 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 279
ApoI RAATTY 2 cut(s) 66, 284
BalI TGGCCA 1 cut(s) 34
BanII GRGCYC 1 cut(s) 25
BbsI GAAGAC 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 266
BccI CCATC 1 cut(s) 67
BceAI ACGGC 1 cut(s) 143
BciVI GTATCC 1 cut(s) 190
BclI TGATCA 1 cut(s) 202
BfuI GTATCC 1 cut(s) 190
BisI GCNGC 1 cut(s) 280
BlsI GCNGC 1 cut(s) 281
BmsI GCATC 1 cut(s) 357
BpiI GAAGAC 1 cut(s) 327
BsaJI CCNNGG 2 cut(s) 125, 183
BseDI CCNNGG 2 cut(s) 125, 183
BseGI GGATG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 61
BseXI GCAGC 1 cut(s) 266
BshFI GGCC 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 25
BsnI GGCC 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 4 cut(s) 16, 75, 94, 202
BspANI GGCC 1 cut(s) 34
BspCNI CTCAG 1 cut(s) 60
BspPI GGATC 1 cut(s) 102
BssECI CCNNGG 2 cut(s) 125, 183
BssMI GATC 4 cut(s) 16, 75, 94, 202
BssT1I CCWWGG 1 cut(s) 183
Bst6I CTCTTC 1 cut(s) 260
BstDEI CTNAG 1 cut(s) 47
BstDSI CCRYGG 1 cut(s) 125
BstF5I GGATG 1 cut(s) 190
BstKTI GATC 4 cut(s) 19, 78, 97, 205
BstMBI GATC 4 cut(s) 16, 75, 94, 202
BstV1I GCAGC 1 cut(s) 266
BstV2I GAAGAC 1 cut(s) 327
BstX2I RGATCY 1 cut(s) 94
BstXI CCANNNNNNTGG 1 cut(s) 340
BstYI RGATCY 1 cut(s) 94
BsuI GTATCC 1 cut(s) 190
BsuRI GGCC 1 cut(s) 34
BtgI CCRYGG 1 cut(s) 125
BtsCI GGATG 1 cut(s) 190
CviAII CATG 2 cut(s) 30, 374
CviJI RGCY 5 cut(s) 23, 34, 130, 209, 258
CviKI_1 RGCY 5 cut(s) 23, 34, 130, 209, 258
DdeI CTNAG 1 cut(s) 47
DpnI GATC 4 cut(s) 18, 77, 96, 204
DpnII GATC 4 cut(s) 16, 75, 94, 202
EaeI YGGCCR 1 cut(s) 32
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Ecl136II GAGCTC 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 25
Eco53kI GAGCTC 1 cut(s) 23
Eco57I CTGAAG 1 cut(s) 324
EcoICRI GAGCTC 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 2 cut(s) 33, 377
FaiI YATR 6 cut(s) 14, 31, 234, 295, 297, 375
FatI CATG 2 cut(s) 29, 373
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 280
FokI GGATG 1 cut(s) 177
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 280
GluI GCNGC 1 cut(s) 280
HaeIII GGCC 1 cut(s) 34
Hin1II CATG 2 cut(s) 33, 377
HinfI GANTC 1 cut(s) 329
Hpy188I TCNGA 1 cut(s) 353
Hpy188III TCNNGA 6 cut(s) 54, 63, 82, 92, 98, 109
HpyCH4V TGCA 2 cut(s) 282, 348
HpyF3I CTNAG 1 cut(s) 47
Hsp92II CATG 2 cut(s) 33, 377
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 4 cut(s) 16, 75, 94, 202
LmnI GCTCC 2 cut(s) 28, 263
LpnPI CCDG 2 cut(s) 67, 77
Lsp1109I GCAGC 1 cut(s) 266
LweI GCATC 1 cut(s) 357
MalI GATC 4 cut(s) 18, 77, 96, 204
MboI GATC 4 cut(s) 16, 75, 94, 202
MboII GAAGA 3 cut(s) 277, 317, 332
MflI RGATCY 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 25
MlsI TGGCCA 1 cut(s) 34
MluCI AATT 4 cut(s) 66, 138, 215, 284
MluNI TGGCCA 1 cut(s) 34
MmeI TCCRAC 1 cut(s) 50
MnlI CCTC 1 cut(s) 267
Mox20I TGGCCA 1 cut(s) 34
MscI TGGCCA 1 cut(s) 34
Msp20I TGGCCA 1 cut(s) 34
NdeII GATC 4 cut(s) 16, 75, 94, 202
NlaIII CATG 2 cut(s) 33, 377
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PfeI GAWTC 1 cut(s) 329
PkrI GCNGC 1 cut(s) 281
Psp124BI GAGCTC 1 cut(s) 25
PsuI RGATCY 1 cut(s) 94
SacI GAGCTC 1 cut(s) 25
SatI GCNGC 1 cut(s) 280
Sau3AI GATC 4 cut(s) 16, 75, 94, 202
SduI GDGCHC 1 cut(s) 25
SetI ASST 5 cut(s) 25, 260, 278, 294, 314
SfaNI GCATC 1 cut(s) 357
Sse9I AATT 4 cut(s) 66, 138, 215, 284
SstI GAGCTC 1 cut(s) 25
StyI CCWWGG 1 cut(s) 183
TaqI TCGA 4 cut(s) 19, 74, 83, 288
TasI AATT 4 cut(s) 66, 138, 215, 284
TfiI GAWTC 1 cut(s) 329
TseI GCWGC 1 cut(s) 279
TspDTI ATGAA 1 cut(s) 168
XapI RAATTY 2 cut(s) 66, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.