Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001385.1

Orthogroup ID

OG0003298

Physical Location & Seq

Genomic Coordinates Reverse (-)

89020 .. 90641

Gene Structure 1622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001385.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgagggttttgaagctgatagagcggcggcgtttggctccggtgacgcgaaacgacgttgttgatgagaacgaaggcgtacggaccaggagcaggagcatcactcactcgtataagaaactagctccgtcgccattgctcacgctctccgttctgaagctcgacggctctattgaattcattaggcatatgtccatcagcaacatgcctttggaaaaagggtctaagaatgagactgtgccatacaaacagcacttaatgttgtcatatggatcaagtggtcatgaggaggaagtagagaatggttcagaggattttgacaataatgtaagtcaggaggacaactctgaatatcccaatagagctgtgaaggaaggtcctgtgcctgactttaagttgcctcgtttctggaaagggtggctctcctactccaagttattgattgagatgcctgaattcctcaggaagcggatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

158

Amino Acids

18.3

Weight (kDa)

8.8

Isoelectric Point (pI)

65.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02640 FvH4_6g29570
malus_domestica	MD02G1027100.v1.1 MD15G1168600.v1.1 MD17G1213000.v1.1
prunus_persica	Prupe.3G088400_v2.0.a1 Prupe.3G088400_v2.0.a1 Prupe.3G088400_v2.0.a1 Prupe.7G247900_v2.0.a1 Prupe.7G247900_v2.0.a1 Prupe.7G247900_v2.0.a1 Prupe.7G247900_v2.0.a1
pyrus_communis	pycom02g02210 pycom15g15040 pycom17g21800
rosa_chinensis	RchiOBHm_Chr2g0135131
rosa_laevigata	RLG00000015891 RLG00000019444
rosa_multiflora	Rmu_co8501197.1_g000001 Rmu_sc0001385.1_g000018 Rmu_sc0003543.1_g000006
rosa_roxburghii	Rroxscaffold_2G00109460 Rroxscaffold_2G00153300
rosa_rugosa	Rorug01G0478100 Rorug01G0478200 Rorug02G0323400 Rorug02G0323500.1
rosa_samantha	Rh2AG032200 Rh2AG371600 Rh2BG031300 Rh2BG379900 Rh2CG031700 Rh2CG359000 Rh2DG396500
rosa_wichuraiana	Rw0G013590 Rw2G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	25
AccII	CGCG	1 cut(s)	49
AciI	CCGC	3 cut(s)	25, 28, 469
AclWI	GGATC	1 cut(s)	280
AcsI	RAATTY	2 cut(s)	176, 455
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	13, 176
AjnI	CCWGG	1 cut(s)	86
AluBI	AGCT	4 cut(s)	16, 125, 160, 365
AluI	AGCT	4 cut(s)	16, 125, 160, 365
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	1 cut(s)	280
ApoI	RAATTY	2 cut(s)	176, 455
AspS9I	GGNCC	2 cut(s)	84, 377
AsuHPI	GGTGA	1 cut(s)	55
AvaII	GGWCC	2 cut(s)	84, 377
AxyI	CCTNAGG	1 cut(s)	461
BccI	CCATC	1 cut(s)	203
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	227
BfaI	CTAG	2 cut(s)	122, 475
BisI	GCNGC	2 cut(s)	26, 29
BlsI	GCNGC	2 cut(s)	27, 30
Bme1390I	CCNGG	1 cut(s)	88
Bme18I	GGWCC	2 cut(s)	84, 377
BmgT120I	GGNCC	2 cut(s)	84, 377
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	88
BmsI	GCATC	2 cut(s)	108, 438
BplI	GAGNNNNNCTC	4 cut(s)	88, 120, 329, 361
BsaWI	WCCGGW	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse21I	CCTNAGG	1 cut(s)	461
Bse3DI	GCAATG	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	1 cut(s)	475
BseRI	GAGGAG	1 cut(s)	302
Bsh1236I	CGCG	1 cut(s)	49
BsiSI	CCGG	1 cut(s)	41
BsiWI	CGTACG	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmAI	GTCTC	1 cut(s)	227
Bsp143I	GATC	2 cut(s)	272, 471
BspACI	CCGC	3 cut(s)	25, 28, 469
BspCNI	CTCAG	1 cut(s)	474
BspFNI	CGCG	1 cut(s)	49
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	280
BsrBI	CCGCTC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	134
BssMI	GATC	2 cut(s)	272, 471
Bst2UI	CCWGG	1 cut(s)	88
Bst4CI	ACNGT	1 cut(s)	238
BstDEI	CTNAG	2 cut(s)	225, 461
BstFNI	CGCG	1 cut(s)	49
BstKTI	GATC	2 cut(s)	275, 474
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	2 cut(s)	272, 471
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstNI	CCWGG	1 cut(s)	88
BstNSI	RCATGY	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	86
BstUI	CGCG	1 cut(s)	49
BstX2I	RGATCY	1 cut(s)	471
BstYI	RGATCY	1 cut(s)	471
Bsu36I	CCTNAGG	1 cut(s)	461
CciI	TCATGA	1 cut(s)	283
Cfr13I	GGNCC	2 cut(s)	84, 377
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	80
CviAII	CATG	2 cut(s)	205, 284
CviJI	RGCY	7 cut(s)	16, 38, 125, 160, 168, 365, 421
CviKI_1	RGCY	7 cut(s)	16, 38, 125, 160, 168, 365, 421
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	2 cut(s)	225, 461
DpnI	GATC	2 cut(s)	274, 473
DpnII	GATC	2 cut(s)	272, 471
Eco47I	GGWCC	2 cut(s)	84, 377
Eco57I	CTGAAG	1 cut(s)	176
Eco81I	CCTNAGG	1 cut(s)	461
EcoO109I	RGGNCCY	1 cut(s)	377
EcoRI	GAATTC	2 cut(s)	176, 455
EcoRII	CCWGG	1 cut(s)	86
FaeI	CATG	2 cut(s)	208, 287
FaiI	YATR	8 cut(s)	114, 189, 191, 206, 244, 268, 270, 285
FatI	CATG	2 cut(s)	204, 283
FauNDI	CATATG	2 cut(s)	189, 268
Fnu4HI	GCNGC	2 cut(s)	26, 29
Fsp4HI	GCNGC	2 cut(s)	26, 29
FspBI	CTAG	2 cut(s)	122, 475
GluI	GCNGC	2 cut(s)	26, 29
HapII	CCGG	1 cut(s)	41
HgaI	GACGC	1 cut(s)	55
Hin1II	CATG	2 cut(s)	208, 287
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	1 cut(s)	55
Hpy188I	TCNGA	3 cut(s)	156, 310, 349
Hpy188III	TCNNGA	4 cut(s)	284, 335, 409, 463
Hpy99I	CGWCG	3 cut(s)	59, 133, 167
HpyAV	CCTTC	3 cut(s)	68, 364, 368
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	57
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	2 cut(s)	225, 461
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	208, 287
Kzo9I	GATC	2 cut(s)	272, 471
LmnI	GCTCC	4 cut(s)	43, 90, 96, 130
LweI	GCATC	2 cut(s)	108, 438
MaeI	CTAG	2 cut(s)	122, 475
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	2 cut(s)	274, 473
MbiI	CCGCTC	1 cut(s)	25
MboI	GATC	2 cut(s)	272, 471
MflI	RGATCY	1 cut(s)	471
MluCI	AATT	2 cut(s)	176, 455
MnlI	CCTC	6 cut(s)	280, 283, 304, 331, 411, 470
MseI	TTAA	2 cut(s)	257, 393
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	88
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	1 cut(s)	22
NdeI	CATATG	2 cut(s)	189, 268
NdeII	GATC	2 cut(s)	272, 471
NlaIII	CATG	2 cut(s)	208, 287
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	208
PagI	TCATGA	1 cut(s)	283
Pfl23II	CGTACG	1 cut(s)	79
PkrI	GCNGC	2 cut(s)	27, 30
PpuMI	RGGWCCY	1 cut(s)	377
Psp5II	RGGWCCY	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	86
PspLI	CGTACG	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	2 cut(s)	84, 377
PspPPI	RGGWCCY	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	471
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	257, 393
SatI	GCNGC	2 cut(s)	26, 29
Sau3AI	GATC	2 cut(s)	272, 471
Sau96I	GGNCC	2 cut(s)	84, 377
ScrFI	CCNGG	1 cut(s)	88
SetI	ASST	6 cut(s)	18, 60, 127, 162, 367, 379
SfaNI	GCATC	2 cut(s)	108, 438
SinI	GGWCC	2 cut(s)	84, 377
Sse9I	AATT	2 cut(s)	176, 455
SsiI	CCGC	3 cut(s)	25, 28, 469
SspMI	CTAG	2 cut(s)	122, 475
StyD4I	CCNGG	1 cut(s)	86
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	1 cut(s)	162
TasI	AATT	2 cut(s)	176, 455
TauI	GCSGC	2 cut(s)	28, 31
Tru1I	TTAA	2 cut(s)	257, 393
Tru9I	TTAA	2 cut(s)	257, 393
TseFI	GTSAC	1 cut(s)	43
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	1 cut(s)	169
TspGWI	ACGGA	3 cut(s)	97, 117, 139
VpaK11BI	GGWCC	2 cut(s)	84, 377
XapI	RAATTY	2 cut(s)	176, 455
XceI	RCATGY	1 cut(s)	208
XspI	CTAG	2 cut(s)	122, 475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.