RLG00000019444

ATP synthesis coupled proton transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003298
Physical Location & Seq
Reverse (-)
52055986 .. 52058320
2335 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019444

Sequence Viewer

Length: 705 bp
ATGAGGGTTTTGAAGCTGATAGAGCGCCGGCGTTTGGCTCCGGTGACGCGAAACGACGTCGTTGATGAGAACGAAGGCGTACGGACCAGGAGCAGGAGCATCACTCACTCGTATAAGAAACTAGCTCCGTCGCCATTGCTCACGCTCTCCGTTCTGAAGCTCGACGGCTCTGTTTTCGAAATTCATGTTGGGAGGACAGCGACTGTAGCAGAGCTCAAACAAGCAGTAGAGGTGGTGTTTACTTCTTCTATTAGCAAGATTCCATGGTCACTAGTTTGGGGGCATTTCTGCTTGTGCCATGTAGGTAAGAAGCTAACTAATGACAGGGCGCATATTCGGAATTTTGGGATCAAGGATGGTGATCAAATTGAATTCATTAGGCATATGTCCATCAGCAACATGCCTTTTGAAAAAGGGTCTAAGAATGAGACTGTGCCATACAAACAGCACTTAAAGTTGTCATATGGATCAAGTGATCATGAGGAGGAAGTAGAGAATGGTTCAGAGGATTTTGACAATAATGTAAGTCAGGAGGACAACTCTGAGTATCATCCCAATAGAGCTGTGAAGGAAGGTCCTGTGCCTGAATTTAAGTTGCCTCGTTTCTGGAAAGGGTGGCTCTCATACTCCAAGGTTGTCGAGGGTTTTAAGAGAGGGCAGGAATTATTGATTGAGATGCCTGAATTCCTCAGGAAGCGAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

235

Amino Acids

26.95

Weight (kDa)

8.97

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiquitin_4 PF18036 47 - 128 2.8e-22 Ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 60
AccII CGCG 1 cut(s) 49
AclWI GGATC 2 cut(s) 356, 475
AcsI RAATTY 5 cut(s) 180, 340, 371, 587, 683
AcuI CTGAAG 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 1 cut(s) 81
AfiI CCNNNNNNNGG 2 cut(s) 34, 93
AgsI TTSAA 3 cut(s) 13, 371, 410
AhlI ACTAGT 1 cut(s) 271
AjnI CCWGG 1 cut(s) 86
AjuI GAANNNNNNNTTGG 2 cut(s) 171, 203
AluBI AGCT 6 cut(s) 16, 125, 160, 214, 313, 563
AluI AGCT 6 cut(s) 16, 125, 160, 214, 313, 563
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 2 cut(s) 356, 475
AlwNI CAGNNNCTG 1 cut(s) 203
ApoI RAATTY 5 cut(s) 180, 340, 371, 587, 683
AspLEI GCGC 2 cut(s) 27, 331
AspS9I GGNCC 2 cut(s) 84, 575
AsuHPI GGTGA 2 cut(s) 55, 371
AsuII TTCGAA 1 cut(s) 177
AvaII GGWCC 2 cut(s) 84, 575
AxyI CCTNAGG 1 cut(s) 689
BanII GRGCYC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 216
BccI CCATC 2 cut(s) 350, 398
BceAI ACGGC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 88
BclI TGATCA 2 cut(s) 361, 475
BcoDI GTCTC 1 cut(s) 422
BcuI ACTAGT 1 cut(s) 271
BfaI CTAG 3 cut(s) 122, 272, 703
BfmI CTRYAG 1 cut(s) 204
BfoI RGCGCY 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 88
Bme18I GGWCC 2 cut(s) 84, 575
BmgT120I GGNCC 2 cut(s) 84, 575
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 88
BmsI GCATC 2 cut(s) 108, 666
BplI GAGNNNNNCTC 4 cut(s) 88, 120, 524, 556
Bpu14I TTCGAA 1 cut(s) 177
BsaBI GATNNNNATC 1 cut(s) 360
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 263, 630
BsaWI WCCGGW 1 cut(s) 40
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 93
Bse118I RCCGGY 1 cut(s) 27
Bse21I CCTNAGG 1 cut(s) 689
Bse3DI GCAATG 1 cut(s) 134
Bse8I GATNNNNATC 1 cut(s) 360
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 2 cut(s) 263, 630
BseGI GGATG 2 cut(s) 361, 550
BseJI GATNNNNATC 1 cut(s) 360
BseLI CCNNNNNNNGG 2 cut(s) 34, 93
BseMI GCAATG 1 cut(s) 134
BseMII CTCAG 2 cut(s) 534, 703
BseRI GAGGAG 1 cut(s) 497
Bsh1236I CGCG 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 216
BsiSI CCGG 2 cut(s) 28, 41
BsiWI CGTACG 1 cut(s) 79
BslI CCNNNNNNNGG 2 cut(s) 34, 93
BsmAI GTCTC 1 cut(s) 422
Bsp119I TTCGAA 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 4 cut(s) 348, 361, 467, 475
Bsp19I CCATGG 1 cut(s) 263
BspCNI CTCAG 2 cut(s) 535, 702
BspFNI CGCG 1 cut(s) 49
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 1 cut(s) 39
BspPI GGATC 2 cut(s) 356, 475
BspT104I TTCGAA 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 27
BssECI CCNNGG 2 cut(s) 263, 630
BssMI GATC 4 cut(s) 348, 361, 467, 475
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 2 cut(s) 263, 630
Bst2UI CCWGG 1 cut(s) 88
Bst4CI ACNGT 2 cut(s) 205, 433
BstACI GRCGYC 1 cut(s) 57
BstBI TTCGAA 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 29
BstDEI CTNAG 3 cut(s) 420, 543, 689
BstDSI CCRYGG 1 cut(s) 263
BstF5I GGATG 2 cut(s) 361, 550
BstFNI CGCG 1 cut(s) 49
BstH2I RGCGCY 1 cut(s) 28
BstHHI GCGC 2 cut(s) 27, 331
BstKTI GATC 4 cut(s) 351, 364, 470, 478
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 4 cut(s) 348, 361, 467, 475
BstMWI GCNNNNNNNGC 2 cut(s) 22, 206
BstNI CCWGG 1 cut(s) 88
BstNSI RCATGY 1 cut(s) 403
BstSCI CCNGG 1 cut(s) 86
BstSFI CTRYAG 1 cut(s) 204
BstUI CGCG 1 cut(s) 49
Bsu36I CCTNAGG 1 cut(s) 689
BtgI CCRYGG 1 cut(s) 263
BtsCI GGATG 2 cut(s) 361, 550
Cac8I GCNNGC 1 cut(s) 29
CaiI CAGNNNCTG 1 cut(s) 203
CciI TCATGA 1 cut(s) 478
CfoI GCGC 2 cut(s) 27, 331
Cfr10I RCCGGY 1 cut(s) 27
Cfr13I GGNCC 2 cut(s) 84, 575
CseI GACGC 1 cut(s) 55
Csp6I GTAC 1 cut(s) 80
CviAII CATG 5 cut(s) 185, 264, 299, 400, 479
CviJI RGCY 9 cut(s) 16, 38, 125, 160, 168, 214, 313, 563, 619
CviKI_1 RGCY 9 cut(s) 16, 38, 125, 160, 168, 214, 313, 563, 619
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 3 cut(s) 420, 543, 689
DpnI GATC 4 cut(s) 350, 363, 469, 477
DpnII GATC 4 cut(s) 348, 361, 467, 475
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 2 cut(s) 263, 630
Eco24I GRGCYC 1 cut(s) 216
Eco47I GGWCC 2 cut(s) 84, 575
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 176
Eco81I CCTNAGG 1 cut(s) 689
EcoICRI GAGCTC 1 cut(s) 214
EcoO109I RGGNCCY 1 cut(s) 575
EcoRI GAATTC 2 cut(s) 371, 683
EcoRII CCWGG 1 cut(s) 86
EcoT14I CCWWGG 2 cut(s) 263, 630
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 2 cut(s) 263, 630
FaeI CATG 5 cut(s) 188, 267, 302, 403, 482
FatI CATG 5 cut(s) 184, 263, 298, 399, 478
FauNDI CATATG 2 cut(s) 384, 463
FbaI TGATCA 2 cut(s) 361, 475
FokI GGATG 2 cut(s) 368, 537
FriOI GRGCYC 1 cut(s) 216
FspBI CTAG 3 cut(s) 122, 272, 703
GlaI GCGC 2 cut(s) 26, 330
HaeII RGCGCY 1 cut(s) 28
HapII CCGG 2 cut(s) 28, 41
HgaI GACGC 1 cut(s) 55
HhaI GCGC 2 cut(s) 27, 331
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 5 cut(s) 188, 267, 302, 403, 482
Hin6I GCGC 2 cut(s) 25, 329
HinP1I GCGC 2 cut(s) 25, 329
HinfI GANTC 2 cut(s) 259, 699
HpaII CCGG 2 cut(s) 28, 41
HphI GGTGA 2 cut(s) 55, 371
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 4 cut(s) 156, 339, 505, 544
Hpy188III TCNNGA 4 cut(s) 479, 530, 607, 691
Hpy8I GTNNAC 1 cut(s) 240
Hpy99I CGWCG 4 cut(s) 59, 62, 133, 167
HpyAV CCTTC 3 cut(s) 68, 562, 566
HpyCH4III ACNGT 2 cut(s) 205, 433
HpyCH4IV ACGT 1 cut(s) 57
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 206
HpyF3I CTNAG 3 cut(s) 420, 543, 689
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 5 cut(s) 188, 267, 302, 403, 482
HspAI GCGC 2 cut(s) 25, 329
KroI GCCGGC 1 cut(s) 27
KroNI GCCGGC 1 cut(s) 29
Ksp22I TGATCA 2 cut(s) 361, 475
Kzo9I GATC 4 cut(s) 348, 361, 467, 475
LmnI GCTCC 4 cut(s) 43, 90, 96, 130
LweI GCATC 2 cut(s) 108, 666
MaeI CTAG 3 cut(s) 122, 272, 703
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 2 cut(s) 43, 267
MalI GATC 4 cut(s) 350, 363, 469, 477
MboI GATC 4 cut(s) 348, 361, 467, 475
MboII GAAGA 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 7 cut(s) 180, 340, 366, 371, 587, 662, 683
MreI CGCCGGCG 1 cut(s) 27
MroNI GCCGGC 1 cut(s) 27
MseI TTAA 3 cut(s) 452, 591, 648
MspI CCGG 2 cut(s) 28, 41
MspR9I CCNGG 1 cut(s) 88
MvaI CCWGG 1 cut(s) 88
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 2 cut(s) 22, 206
NaeI GCCGGC 1 cut(s) 29
NcoI CCATGG 1 cut(s) 263
NdeI CATATG 2 cut(s) 384, 463
NdeII GATC 4 cut(s) 348, 361, 467, 475
NgoMIV GCCGGC 1 cut(s) 27
NlaIII CATG 5 cut(s) 188, 267, 302, 403, 482
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 2 cut(s) 43, 267
NspI RCATGY 1 cut(s) 403
NspV TTCGAA 1 cut(s) 177
PagI TCATGA 1 cut(s) 478
PdiI GCCGGC 1 cut(s) 29
PfeI GAWTC 2 cut(s) 259, 699
Pfl23II CGTACG 1 cut(s) 79
PpuMI RGGWCCY 1 cut(s) 575
Psp124BI GAGCTC 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 575
Psp6I CCWGG 1 cut(s) 86
PspGI CCWGG 1 cut(s) 86
PspLI CGTACG 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 2 cut(s) 84, 575
PspPPI RGGWCCY 1 cut(s) 575
PstNI CAGNNNCTG 1 cut(s) 203
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 3 cut(s) 452, 591, 648
Sau3AI GATC 4 cut(s) 348, 361, 467, 475
Sau96I GGNCC 2 cut(s) 84, 575
ScrFI CCNGG 1 cut(s) 88
SduI GDGCHC 1 cut(s) 216
SfaNI GCATC 2 cut(s) 108, 666
SfcI CTRYAG 1 cut(s) 204
SfuI TTCGAA 1 cut(s) 177
SgrAI CRCCGGYG 1 cut(s) 27
SinI GGWCC 2 cut(s) 84, 575
SpeI ACTAGT 1 cut(s) 271
Sse9I AATT 7 cut(s) 180, 340, 366, 371, 587, 662, 683
SspMI CTAG 3 cut(s) 122, 272, 703
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 86
StyI CCWWGG 2 cut(s) 263, 630
TaaI ACNGT 2 cut(s) 205, 433
TaiI ACGT 1 cut(s) 60
TaqI TCGA 3 cut(s) 162, 177, 639
TasI AATT 7 cut(s) 180, 340, 366, 371, 587, 662, 683
TfiI GAWTC 2 cut(s) 259, 699
Tru1I TTAA 3 cut(s) 452, 591, 648
Tru9I TTAA 3 cut(s) 452, 591, 648
TseFI GTSAC 2 cut(s) 43, 267
Tsp45I GTSAC 2 cut(s) 43, 267
TspDTI ATGAA 2 cut(s) 173, 364
TspGWI ACGGA 3 cut(s) 97, 117, 139
VpaK11BI GGWCC 2 cut(s) 84, 575
XapI RAATTY 5 cut(s) 180, 340, 371, 587, 683
XceI RCATGY 1 cut(s) 403
XspI CTAG 3 cut(s) 122, 272, 703
ZraI GACGTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.