Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003543.1

Orthogroup ID

OG0003298

Physical Location & Seq

Genomic Coordinates Reverse (-)

17767 .. 20069

Gene Structure 2303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003543.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgagggttttgaagctgatagagcggcggcgtttggctccggtgacgcgaaacgacgtcgttgatgagaacgaaggcgtacggaccaggagcaggagcatcactcactcgtataagaaactagctccgtcgccattgctcacgctctccgttctgaagctcgacggctctgttttcgaaattcatgttgggaggacagcgactgtagcagagctcaaacaagcagtagaggtggtgtttacgtcttctattagcaagattccatggtcactagtttgggggcatttctgcttgtgccatgtaggtaagaagctaactaatgacagagcgcatattcggaattttgggatcaaggatggtgatcaaattgaattcattaggcatatgtccatcagcaacatgcctttggaaaaagggtctaagaatgagactgtgccatacaaacagcacttaatgttgtcatatggatcaagtggtcatgaggaggaattagagaatggttcagaggattttgacaataatgtaagtcaggaggacaactctgagtatcccaatagagctgtgaaggacggtcctgtgcctgactttaagttgcctcgtttctggaaagggtggctctcatactccaaggttgtcgaaggttttaagagagggcaggaattattgattgagatgcctgaattcctcaggaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

231

Amino Acids

26.44

Weight (kDa)

8.77

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003298)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02640 FvH4_6g29570
malus_domestica	MD02G1027100.v1.1 MD15G1168600.v1.1 MD17G1213000.v1.1
prunus_persica	Prupe.3G088400_v2.0.a1 Prupe.3G088400_v2.0.a1 Prupe.3G088400_v2.0.a1 Prupe.7G247900_v2.0.a1 Prupe.7G247900_v2.0.a1 Prupe.7G247900_v2.0.a1 Prupe.7G247900_v2.0.a1
pyrus_communis	pycom02g02210 pycom15g15040 pycom17g21800
rosa_chinensis	RchiOBHm_Chr2g0135131
rosa_laevigata	RLG00000015891 RLG00000019444
rosa_multiflora	Rmu_co8501197.1_g000001 Rmu_sc0001385.1_g000018 Rmu_sc0003543.1_g000006
rosa_roxburghii	Rroxscaffold_2G00109460 Rroxscaffold_2G00153300
rosa_rugosa	Rorug01G0478100 Rorug01G0478200 Rorug02G0323400 Rorug02G0323500.1
rosa_samantha	Rh2AG032200 Rh2AG371600 Rh2BG031300 Rh2BG379900 Rh2CG031700 Rh2CG359000 Rh2DG396500
rosa_wichuraiana	Rw0G013590 Rw2G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
AccBSI	CCGCTC	1 cut(s)	25
AccII	CGCG	1 cut(s)	49
AciI	CCGC	2 cut(s)	25, 28
AclWI	GGATC	2 cut(s)	356, 475
AcsI	RAATTY	4 cut(s)	180, 340, 371, 680
AcuI	CTGAAG	1 cut(s)	176
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	13, 371
AhlI	ACTAGT	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	86
AjuI	GAANNNNNNNTTGG	2 cut(s)	171, 203
AluBI	AGCT	6 cut(s)	16, 125, 160, 214, 313, 560
AluI	AGCT	6 cut(s)	16, 125, 160, 214, 313, 560
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	422
AlwI	GGATC	2 cut(s)	356, 475
AlwNI	CAGNNNCTG	1 cut(s)	203
ApoI	RAATTY	4 cut(s)	180, 340, 371, 680
AspLEI	GCGC	1 cut(s)	331
AspS9I	GGNCC	2 cut(s)	84, 572
AsuHPI	GGTGA	2 cut(s)	55, 371
AsuII	TTCGAA	1 cut(s)	177
AvaII	GGWCC	2 cut(s)	84, 572
AxyI	CCTNAGG	1 cut(s)	686
BanII	GRGCYC	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	216
BccI	CCATC	2 cut(s)	350, 398
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	88
BciVI	GTATCC	1 cut(s)	558
BclI	TGATCA	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	422
BcuI	ACTAGT	1 cut(s)	271
BfaI	CTAG	2 cut(s)	122, 272
BfmI	CTRYAG	1 cut(s)	204
BfuI	GTATCC	1 cut(s)	558
BisI	GCNGC	2 cut(s)	26, 29
BlsI	GCNGC	2 cut(s)	27, 30
Bme1390I	CCNGG	1 cut(s)	88
Bme18I	GGWCC	2 cut(s)	84, 572
BmgT120I	GGNCC	2 cut(s)	84, 572
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	88
BmsI	GCATC	2 cut(s)	108, 663
BpiI	GAAGAC	1 cut(s)	237
BplI	GAGNNNNNCTC	4 cut(s)	88, 120, 524, 556
Bpu14I	TTCGAA	1 cut(s)	177
BsaBI	GATNNNNATC	1 cut(s)	360
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	263, 627
BsaWI	WCCGGW	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse21I	CCTNAGG	1 cut(s)	686
Bse3DI	GCAATG	1 cut(s)	134
Bse8I	GATNNNNATC	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	2 cut(s)	263, 627
BseGI	GGATG	1 cut(s)	361
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	1 cut(s)	534
BseRI	GAGGAG	1 cut(s)	497
Bsh1236I	CGCG	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	41
BsiWI	CGTACG	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmAI	GTCTC	1 cut(s)	422
Bsp119I	TTCGAA	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	3 cut(s)	348, 361, 467
Bsp19I	CCATGG	1 cut(s)	263
BspACI	CCGC	2 cut(s)	25, 28
BspCNI	CTCAG	1 cut(s)	535
BspFNI	CGCG	1 cut(s)	49
BspHI	TCATGA	1 cut(s)	478
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	2 cut(s)	356, 475
BspT104I	TTCGAA	1 cut(s)	177
BsrBI	CCGCTC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	263, 627
BssMI	GATC	3 cut(s)	348, 361, 467
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	2 cut(s)	263, 627
Bst2UI	CCWGG	1 cut(s)	88
Bst4CI	ACNGT	3 cut(s)	205, 433, 572
BstACI	GRCGYC	1 cut(s)	57
BstBI	TTCGAA	1 cut(s)	177
BstDEI	CTNAG	3 cut(s)	420, 543, 686
BstDSI	CCRYGG	1 cut(s)	263
BstF5I	GGATG	1 cut(s)	361
BstFNI	CGCG	1 cut(s)	49
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	3 cut(s)	351, 364, 470
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	3 cut(s)	348, 361, 467
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 206
BstNI	CCWGG	1 cut(s)	88
BstNSI	RCATGY	1 cut(s)	403
BstSCI	CCNGG	1 cut(s)	86
BstSFI	CTRYAG	1 cut(s)	204
BstUI	CGCG	1 cut(s)	49
BstV2I	GAAGAC	1 cut(s)	237
Bsu36I	CCTNAGG	1 cut(s)	686
BsuI	GTATCC	1 cut(s)	558
BtgI	CCRYGG	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	361
CaiI	CAGNNNCTG	1 cut(s)	203
CciI	TCATGA	1 cut(s)	478
CfoI	GCGC	1 cut(s)	331
Cfr13I	GGNCC	2 cut(s)	84, 572
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	80
CviAII	CATG	5 cut(s)	185, 264, 299, 400, 479
CviJI	RGCY	9 cut(s)	16, 38, 125, 160, 168, 214, 313, 560, 616
CviKI_1	RGCY	9 cut(s)	16, 38, 125, 160, 168, 214, 313, 560, 616
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	3 cut(s)	420, 543, 686
DpnI	GATC	3 cut(s)	350, 363, 469
DpnII	GATC	3 cut(s)	348, 361, 467
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	2 cut(s)	263, 627
Eco24I	GRGCYC	1 cut(s)	216
Eco47I	GGWCC	2 cut(s)	84, 572
Eco53kI	GAGCTC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	176
Eco81I	CCTNAGG	1 cut(s)	686
EcoICRI	GAGCTC	1 cut(s)	214
EcoRI	GAATTC	2 cut(s)	371, 680
EcoRII	CCWGG	1 cut(s)	86
EcoT14I	CCWWGG	2 cut(s)	263, 627
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	2 cut(s)	263, 627
FaeI	CATG	5 cut(s)	188, 267, 302, 403, 482
FatI	CATG	5 cut(s)	184, 263, 298, 399, 478
FauNDI	CATATG	2 cut(s)	384, 463
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	2 cut(s)	26, 29
FokI	GGATG	1 cut(s)	368
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	2 cut(s)	26, 29
FspBI	CTAG	2 cut(s)	122, 272
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	2 cut(s)	26, 29
HapII	CCGG	1 cut(s)	41
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	1 cut(s)	331
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	5 cut(s)	188, 267, 302, 403, 482
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HinfI	GANTC	1 cut(s)	259
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	2 cut(s)	55, 371
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	4 cut(s)	156, 339, 505, 544
Hpy188III	TCNNGA	4 cut(s)	479, 530, 604, 688
Hpy8I	GTNNAC	1 cut(s)	240
Hpy99I	CGWCG	4 cut(s)	59, 62, 133, 167
HpyAV	CCTTC	3 cut(s)	68, 559, 632
HpyCH4III	ACNGT	3 cut(s)	205, 433, 572
HpyCH4IV	ACGT	2 cut(s)	57, 242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 206
HpyF3I	CTNAG	3 cut(s)	420, 543, 686
HpySE526I	ACGT	2 cut(s)	57, 242
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	5 cut(s)	188, 267, 302, 403, 482
HspAI	GCGC	1 cut(s)	329
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	3 cut(s)	348, 361, 467
LmnI	GCTCC	4 cut(s)	43, 90, 96, 130
LweI	GCATC	2 cut(s)	108, 663
MaeI	CTAG	2 cut(s)	122, 272
MaeII	ACGT	2 cut(s)	57, 242
MaeIII	GTNAC	2 cut(s)	43, 267
MalI	GATC	3 cut(s)	350, 363, 469
MbiI	CCGCTC	1 cut(s)	25
MboI	GATC	3 cut(s)	348, 361, 467
MboII	GAAGA	1 cut(s)	237
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	7 cut(s)	180, 340, 366, 371, 488, 659, 680
MnlI	CCTC	9 cut(s)	186, 223, 475, 478, 499, 526, 606, 644, 695
MseI	TTAA	3 cut(s)	452, 588, 645
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	88
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	2 cut(s)	22, 206
NcoI	CCATGG	1 cut(s)	263
NdeI	CATATG	2 cut(s)	384, 463
NdeII	GATC	3 cut(s)	348, 361, 467
NlaIII	CATG	5 cut(s)	188, 267, 302, 403, 482
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	2 cut(s)	43, 267
NspI	RCATGY	1 cut(s)	403
NspV	TTCGAA	1 cut(s)	177
PagI	TCATGA	1 cut(s)	478
PfeI	GAWTC	1 cut(s)	259
Pfl23II	CGTACG	1 cut(s)	79
PkrI	GCNGC	2 cut(s)	27, 30
Psp124BI	GAGCTC	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	86
PspLI	CGTACG	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	2 cut(s)	84, 572
PstNI	CAGNNNCTG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SacI	GAGCTC	1 cut(s)	216
SaqAI	TTAA	3 cut(s)	452, 588, 645
SatI	GCNGC	2 cut(s)	26, 29
Sau3AI	GATC	3 cut(s)	348, 361, 467
Sau96I	GGNCC	2 cut(s)	84, 572
ScrFI	CCNGG	1 cut(s)	88
SduI	GDGCHC	1 cut(s)	216
SfaNI	GCATC	2 cut(s)	108, 663
SfcI	CTRYAG	1 cut(s)	204
SfuI	TTCGAA	1 cut(s)	177
SinI	GGWCC	2 cut(s)	84, 572
SpeI	ACTAGT	1 cut(s)	271
Sse9I	AATT	7 cut(s)	180, 340, 366, 371, 488, 659, 680
SsiI	CCGC	2 cut(s)	25, 28
SspMI	CTAG	2 cut(s)	122, 272
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	86
StyI	CCWWGG	2 cut(s)	263, 627
TaaI	ACNGT	3 cut(s)	205, 433, 572
TaiI	ACGT	2 cut(s)	60, 245
TaqI	TCGA	3 cut(s)	162, 177, 636
TasI	AATT	7 cut(s)	180, 340, 366, 371, 488, 659, 680
TauI	GCSGC	2 cut(s)	28, 31
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	3 cut(s)	452, 588, 645
Tru9I	TTAA	3 cut(s)	452, 588, 645
TseFI	GTSAC	2 cut(s)	43, 267
Tsp45I	GTSAC	2 cut(s)	43, 267
TspDTI	ATGAA	2 cut(s)	173, 364
TspGWI	ACGGA	3 cut(s)	97, 117, 139
VpaK11BI	GGWCC	2 cut(s)	84, 572
XapI	RAATTY	4 cut(s)	180, 340, 371, 680
XceI	RCATGY	1 cut(s)	403
XspI	CTAG	2 cut(s)	122, 272
ZraI	GACGTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.