RLG00000015891

ATP synthesis coupled proton transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003298
Physical Location & Seq
Forward (+)
2133422 .. 2134189
768 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015891

Sequence Viewer

Length: 429 bp
ATGTTGGAAACTCGTGAACCGGCTGCTGCAAATCATCATCATCATGAGTACTTGTGCACGGAGTCGAATAGCCTCTGCGTTCCAATCACATCCCATTCAATGTCGCCTAAGTTGCTAATCAAGAAGAGCTTTGCTTACCACAAGATGCCTCAACAGCCTCTAAACCTCTCTGTTATCAAGTTGGACGGCTCTACCTTTGAGGTGCGAGTTCCAAGGACGGCAACGGTGGCCAAACTAATAGAGGCCGTGAAGGATGTTTTTGACCGGTCAGCAAATGATGATGAAATGATTTCATGGTCACATGTTTGGGGTCATTTTTGCTTATGTTATAATGGCGAGAAGCTACTTGATTACAAGGCATATATTCGAGTCATTGGAATCAAAGATGGCGATCAGCTTTTTTTTGTTCGACATCTTTCAGCAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

143

Amino Acids

16.23

Weight (kDa)

7.12

Isoelectric Point (pI)

39.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiquitin_4 PF18036 55 - 139 2.4e-23 Ubiquitin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 330
AcoI YGGCCR 1 cut(s) 228
AfaI GTAC 1 cut(s) 50
AflIII ACRYGT 1 cut(s) 301
AgeI ACCGGT 1 cut(s) 264
AgsI TTSAA 1 cut(s) 99
AluBI AGCT 3 cut(s) 129, 343, 397
AluI AGCT 3 cut(s) 129, 343, 397
Alw21I GWGCWC 1 cut(s) 59
Alw44I GTGCAC 1 cut(s) 55
AoxI GGCC 2 cut(s) 228, 243
ApaLI GTGCAC 1 cut(s) 55
ApeKI GCWGC 2 cut(s) 23, 26
AsiGI ACCGGT 1 cut(s) 264
BaeGI GKGCMC 1 cut(s) 59
BalI TGGCCA 1 cut(s) 230
BauI CACGAG 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 2 cut(s) 10, 13
BccI CCATC 1 cut(s) 380
BceAI ACGGC 3 cut(s) 202, 230, 234
BisI GCNGC 2 cut(s) 24, 27
BlsI GCNGC 2 cut(s) 25, 28
BmcAI AGTACT 1 cut(s) 50
BmsI GCATC 1 cut(s) 135
BsaBI GATNNNNATC 1 cut(s) 390
BsaJI CCNNGG 1 cut(s) 212
BsaWI WCCGGW 1 cut(s) 264
Bse118I RCCGGY 2 cut(s) 19, 264
Bse3DI GCAATG 1 cut(s) 429
Bse8I GATNNNNATC 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 212
BseGI GGATG 2 cut(s) 89, 259
BseJI GATNNNNATC 1 cut(s) 390
BseMI GCAATG 1 cut(s) 429
BseSI GKGCMC 1 cut(s) 59
BseXI GCAGC 2 cut(s) 10, 13
BshFI GGCC 2 cut(s) 230, 245
BshTI ACCGGT 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 59
BsiSI CCGG 2 cut(s) 20, 265
BsnI GGCC 2 cut(s) 230, 245
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 391
BspANI GGCC 2 cut(s) 230, 245
BspHI TCATGA 1 cut(s) 43
BspQI GCTCTTC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 429
BsrFI RCCGGY 2 cut(s) 19, 264
BssAI RCCGGY 2 cut(s) 19, 264
BssECI CCNNGG 1 cut(s) 212
BssMI GATC 1 cut(s) 391
BssSI CACGAG 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 212
Bst2BI CACGAG 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 108
BstF5I GGATG 2 cut(s) 89, 259
BstKTI GATC 1 cut(s) 394
BstMBI GATC 1 cut(s) 391
BstMWI GCNNNNNNNGC 3 cut(s) 112, 154, 227
BstNSI RCATGY 1 cut(s) 305
BstSLI GKGCMC 1 cut(s) 59
BstV1I GCAGC 2 cut(s) 10, 13
BsuRI GGCC 2 cut(s) 230, 245
BtsCI GGATG 2 cut(s) 89, 259
CciI TCATGA 1 cut(s) 43
Cfr10I RCCGGY 2 cut(s) 19, 264
Csp6I GTAC 1 cut(s) 49
CspAI ACCGGT 1 cut(s) 264
CviAII CATG 3 cut(s) 44, 294, 302
CviJI RGCY 9 cut(s) 23, 72, 129, 157, 189, 230, 245, 343, 397
CviKI_1 RGCY 9 cut(s) 23, 72, 129, 157, 189, 230, 245, 343, 397
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 1 cut(s) 108
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
EaeI YGGCCR 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 212
EcoT14I CCWWGG 1 cut(s) 212
ErhI CCWWGG 1 cut(s) 212
FaeI CATG 3 cut(s) 47, 297, 305
FaiI YATR 7 cut(s) 45, 295, 303, 325, 330, 361, 363
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FatI CATG 3 cut(s) 43, 293, 301
Fnu4HI GCNGC 2 cut(s) 24, 27
FokI GGATG 2 cut(s) 76, 266
Fsp4HI GCNGC 2 cut(s) 24, 27
GluI GCNGC 2 cut(s) 24, 27
HaeIII GGCC 2 cut(s) 230, 245
HapII CCGG 2 cut(s) 20, 265
Hin1II CATG 3 cut(s) 47, 297, 305
HinfI GANTC 3 cut(s) 62, 369, 378
HpaII CCGG 2 cut(s) 20, 265
Hpy166II GTNNAC 2 cut(s) 17, 57
Hpy188III TCNNGA 3 cut(s) 14, 44, 121
Hpy8I GTNNAC 2 cut(s) 17, 57
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 2 cut(s) 29, 57
HpyF10VI GCNNNNNNNGC 3 cut(s) 112, 154, 227
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 3 cut(s) 47, 297, 305
Kzo9I GATC 1 cut(s) 391
LguI GCTCTTC 1 cut(s) 119
LpnPI CCDG 2 cut(s) 33, 278
Lsp1109I GCAGC 2 cut(s) 10, 13
LweI GCATC 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 297
MalI GATC 1 cut(s) 393
MboI GATC 1 cut(s) 391
MboII GAAGA 1 cut(s) 136
MhlI GDGCHC 1 cut(s) 59
MlsI TGGCCA 1 cut(s) 230
MluNI TGGCCA 1 cut(s) 230
MlyI GAGTC 2 cut(s) 71, 378
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 6 cut(s) 83, 159, 168, 176, 193, 235
Mox20I TGGCCA 1 cut(s) 230
MscI TGGCCA 1 cut(s) 230
MslI CAYNNNNRTG 1 cut(s) 42
Msp20I TGGCCA 1 cut(s) 230
MspI CCGG 2 cut(s) 20, 265
MwoI GCNNNNNNNGC 3 cut(s) 112, 154, 227
NdeII GATC 1 cut(s) 391
NlaIII CATG 3 cut(s) 47, 297, 305
NmuCI GTSAC 1 cut(s) 297
NspI RCATGY 1 cut(s) 305
PagI TCATGA 1 cut(s) 43
PciI ACATGT 1 cut(s) 301
PciSI GCTCTTC 1 cut(s) 119
PfeI GAWTC 1 cut(s) 378
PinAI ACCGGT 1 cut(s) 264
PkrI GCNGC 2 cut(s) 25, 28
PleI GAGTC 2 cut(s) 70, 377
PpsI GAGTC 2 cut(s) 70, 377
PscI ACATGT 1 cut(s) 301
PsiI TTATAA 1 cut(s) 330
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 42
SapI GCTCTTC 1 cut(s) 119
SatI GCNGC 2 cut(s) 24, 27
Sau3AI GATC 1 cut(s) 391
ScaI AGTACT 1 cut(s) 50
SchI GAGTC 2 cut(s) 71, 378
SduI GDGCHC 1 cut(s) 59
SetI ASST 6 cut(s) 131, 168, 197, 204, 345, 399
SfaNI GCATC 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 42
StyI CCWWGG 1 cut(s) 212
TaaI ACNGT 1 cut(s) 226
TaqI TCGA 3 cut(s) 65, 367, 409
TatI WGTACW 1 cut(s) 48
TfiI GAWTC 1 cut(s) 378
TseFI GTSAC 1 cut(s) 297
TseI GCWGC 2 cut(s) 23, 26
Tsp45I GTSAC 1 cut(s) 297
TspDTI ATGAA 2 cut(s) 282, 297
TspGWI ACGGA 1 cut(s) 74
VneI GTGCAC 1 cut(s) 55
XceI RCATGY 1 cut(s) 305
ZrmI AGTACT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.