FvH4_1g02860

Cucumber peeling cupredoxin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002685
Physical Location & Seq
Reverse (-)
1636021 .. 1637816
1796 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02860.t1

Sequence Viewer

Length: 456 bp
ATGGGAAGCTGCAGGGATACGAATATGATAGCTTGCTTAAGCTTTGTAGTTGTTTTGCTGGGTTTGATGAAGGGTGAAACAGCAGCAGAATATTTAGTTGGTAACAGCTTGGGATGGACTCTTCCCCCCAACACCACCTTCTATTCCGATTGGGCTGCTTCTAAGACGTTCCAGTTAGCCAATGTATATCCTAATGGTTCTGTCTCCTGTATTGCAGCATTCAAAGTGACTGGAAATCATACTGTGTATGAAGCAACCAAGGGACAATATGATAACTGCAGTGACCTGATCGGCGGGATAAGTGATGAAATTCAAGAAATCGTGACTCTTGATTCTGCTGGCTCTCGCTACTTCGTCTGTACCGTTGGCGAAAACTGTAAACAAGGTATGAAGATGACCATCACTGTAGAATCCTCGACTTCAGCTCCCATGCTGCTGTTGCGTCCTTACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

152

Amino Acids

16.33

Weight (kDa)

4.81

Isoelectric Point (pI)

29.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 39 - 130 4.7e-10 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 294
AcsI RAATTY 1 cut(s) 309
AcuI CTGAAG 1 cut(s) 405
AfaI GTAC 1 cut(s) 361
AflII CTTAAG 1 cut(s) 37
AgsI TTSAA 2 cut(s) 223, 314
AjuI GAANNNNNNNTTGG 4 cut(s) 81, 113, 122, 154
AluBI AGCT 5 cut(s) 9, 32, 42, 108, 425
AluI AGCT 5 cut(s) 9, 32, 42, 108, 425
Alw26I GTCTC 1 cut(s) 208
ApeKI GCWGC 5 cut(s) 9, 83, 155, 215, 433
ApoI RAATTY 1 cut(s) 309
AsuHPI GGTGA 1 cut(s) 86
BbvI GCAGC 4 cut(s) 95, 142, 227, 420
BccI CCATC 2 cut(s) 108, 407
BcgI CGANNNNNNTGC 2 cut(s) 137, 171
BciVI GTATCC 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 208
BfaI CTAG 1 cut(s) 454
BfmI CTRYAG 3 cut(s) 10, 277, 405
BfrI CTTAAG 1 cut(s) 37
BfuI GTATCC 1 cut(s) 10
BisI GCNGC 5 cut(s) 10, 84, 156, 216, 434
BlsI GCNGC 5 cut(s) 11, 85, 157, 217, 435
BsaBI GATNNNNATC 1 cut(s) 398
BsaJI CCNNGG 1 cut(s) 258
BsaXI ACNNNNNCTCC 2 cut(s) 409, 439
Bse1I ACTGG 2 cut(s) 172, 235
Bse8I GATNNNNATC 1 cut(s) 398
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 1 cut(s) 119
BseJI GATNNNNATC 1 cut(s) 398
BseNI ACTGG 2 cut(s) 172, 235
BseXI GCAGC 4 cut(s) 95, 142, 227, 420
BseYI CCCAGC 1 cut(s) 58
BslFI GGGAC 1 cut(s) 276
BsmAI GTCTC 1 cut(s) 208
BsmFI GGGAC 1 cut(s) 276
BsmI GAATGC 1 cut(s) 218
Bsp143I GATC 1 cut(s) 288
BspACI CCGC 1 cut(s) 294
BspMAI CTGCAG 2 cut(s) 14, 281
BspTI CTTAAG 1 cut(s) 37
BsrI ACTGG 2 cut(s) 172, 235
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 258
Bst4CI ACNGT 4 cut(s) 244, 364, 377, 406
Bst6I CTCTTC 1 cut(s) 126
BstAFI CTTAAG 1 cut(s) 37
BstC8I GCNNGC 2 cut(s) 34, 340
BstDEI CTNAG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 119
BstKTI GATC 1 cut(s) 291
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 1 cut(s) 288
BstMWI GCNNNNNNNGC 1 cut(s) 439
BstSFI CTRYAG 3 cut(s) 10, 277, 405
BstV1I GCAGC 4 cut(s) 95, 142, 227, 420
BsuI GTATCC 1 cut(s) 10
BtsCI GGATG 1 cut(s) 119
BtsI GCAGTG 1 cut(s) 286
BtsIMutI CAGTG 2 cut(s) 286, 402
Cac8I GCNNGC 2 cut(s) 34, 340
CseI GACGC 1 cut(s) 431
Csp6I GTAC 1 cut(s) 360
CviAII CATG 1 cut(s) 430
CviJI RGCY 8 cut(s) 9, 32, 42, 108, 155, 179, 342, 425
CviKI_1 RGCY 8 cut(s) 9, 32, 42, 108, 155, 179, 342, 425
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 1 cut(s) 162
DpnI GATC 1 cut(s) 290
DpnII GATC 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 405
EcoT14I CCWWGG 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 1 cut(s) 433
FaiI YATR 7 cut(s) 26, 187, 240, 249, 270, 389, 431
FaqI GGGAC 1 cut(s) 276
FatI CATG 1 cut(s) 429
FauI CCCGC 1 cut(s) 287
Fnu4HI GCNGC 5 cut(s) 10, 84, 156, 216, 434
FokI GGATG 1 cut(s) 126
Fsp4HI GCNGC 5 cut(s) 10, 84, 156, 216, 434
FspBI CTAG 1 cut(s) 454
GluI GCNGC 5 cut(s) 10, 84, 156, 216, 434
GsaI CCCAGC 1 cut(s) 62
HgaI GACGC 1 cut(s) 431
Hin1II CATG 1 cut(s) 433
HindIII AAGCTT 1 cut(s) 40
HinfI GANTC 4 cut(s) 118, 325, 332, 410
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 3 cut(s) 314, 322, 329
Hpy8I GTNNAC 1 cut(s) 380
HpyAV CCTTC 2 cut(s) 64, 148
HpyCH4III ACNGT 4 cut(s) 244, 364, 377, 406
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 3 cut(s) 12, 215, 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 439
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 1 cut(s) 167
Hsp92II CATG 1 cut(s) 433
Kzo9I GATC 1 cut(s) 288
LmnI GCTCC 1 cut(s) 430
LpnPI CCDG 6 cut(s) 44, 185, 216, 220, 299, 324
Lsp1109I GCAGC 4 cut(s) 95, 142, 227, 420
MaeI CTAG 1 cut(s) 454
MaeII ACGT 1 cut(s) 167
MaeIII GTNAC 4 cut(s) 101, 226, 281, 322
MalI GATC 1 cut(s) 290
MboI GATC 1 cut(s) 288
MboII GAAGA 2 cut(s) 113, 403
MluCI AATT 1 cut(s) 309
MlyI GAGTC 2 cut(s) 112, 319
MnlI CCTC 1 cut(s) 424
MseI TTAA 1 cut(s) 38
MspCI CTTAAG 1 cut(s) 37
Mva1269I GAATGC 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 439
NdeII GATC 1 cut(s) 288
NlaIII CATG 1 cut(s) 433
NmuCI GTSAC 3 cut(s) 226, 281, 322
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PctI GAATGC 1 cut(s) 218
PfeI GAWTC 2 cut(s) 332, 410
PkrI GCNGC 5 cut(s) 11, 85, 157, 217, 435
PleI GAGTC 2 cut(s) 112, 319
PpsI GAGTC 2 cut(s) 112, 319
PspFI CCCAGC 1 cut(s) 58
PstI CTGCAG 2 cut(s) 14, 281
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 5 cut(s) 10, 84, 156, 216, 434
Sau3AI GATC 1 cut(s) 288
SchI GAGTC 2 cut(s) 112, 319
SetI ASST 9 cut(s) 11, 34, 44, 110, 140, 170, 288, 388, 427
SfcI CTRYAG 3 cut(s) 10, 277, 405
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 1 cut(s) 309
SsiI CCGC 1 cut(s) 294
SspI AATATT 1 cut(s) 92
SspMI CTAG 1 cut(s) 454
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 4 cut(s) 244, 364, 377, 406
TaiI ACGT 1 cut(s) 170
TaqI TCGA 1 cut(s) 416
TasI AATT 1 cut(s) 309
TfiI GAWTC 2 cut(s) 332, 410
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TscAI CASTG 2 cut(s) 286, 409
TseFI GTSAC 3 cut(s) 226, 281, 322
TseI GCWGC 5 cut(s) 9, 83, 155, 215, 433
Tsp45I GTSAC 3 cut(s) 226, 281, 322
TspDTI ATGAA 4 cut(s) 83, 264, 321, 404
TspRI CASTG 2 cut(s) 286, 409
Vha464I CTTAAG 1 cut(s) 37
XapI RAATTY 1 cut(s) 309
XspI CTAG 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.