MD15G1170100.v1.1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0002685
Physical Location & Seq
Reverse (-)
13113719 .. 13115057
1339 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1170100.v1.1.491

Sequence Viewer

Length: 492 bp
ATGGTGAGTCGTATGGGATTGGTTGGGTGCTTTCTTCTTGTTGCAGTGGCCTTGTTCAACGGTGCCACAGCTGATACTTACACAGTCGGAGACGATTTGGAATGGACTATTCCTCCAGCCGGCTCTATTGCCTACACCACCTGGGCTAACACAAAAAGATTTCAGAATAATGATACAATAGTATTCAAGTGGAGTGGATCACACACAGTAGCTGAAGTATCGAAGGCTGATTACGATAACTGCTCAAATTCGAACCATCTTGCTTTTTATGATTCCAGCCCTGCAAGTATTACACTGACTTCCAACGTGACCCGTTACTTCATCTGCACCGTAGGTAATCACTGCAGTGATTTAGGGCAGAAGGTGACTATCAAGATTTCTGAAGATGATGATCGCTGGTGGGACCACAACGCCTCTTCTTCTCTCACCGTTAATATTGGTGCCCTAATCCTCTCCACTGCGATGGCCATCTTCTTCTATAGCTTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

164

Amino Acids

17.89

Weight (kDa)

4.9

Isoelectric Point (pI)

26.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 35 - 116 1.1e-19 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 62, 440
AclWI GGATC 1 cut(s) 205
AcoI YGGCCR 1 cut(s) 465
AcsI RAATTY 1 cut(s) 247
AcuI CTGAAG 2 cut(s) 234, 402
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 2 cut(s) 58, 187
AjnI CCWGG 1 cut(s) 140
AleI CACNNNNGTG 1 cut(s) 345
AluBI AGCT 3 cut(s) 71, 212, 483
AluI AGCT 3 cut(s) 71, 212, 483
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 1 cut(s) 205
AlwNI CAGNNNCTG 1 cut(s) 212
AoxI GGCC 2 cut(s) 48, 465
ApoI RAATTY 1 cut(s) 247
AspS9I GGNCC 1 cut(s) 403
AsuHPI GGTGA 3 cut(s) 16, 376, 418
AsuII TTCGAA 1 cut(s) 251
AvaII GGWCC 1 cut(s) 403
BaeGI GKGCMC 1 cut(s) 445
BaeI ACNNNNGTAYC 2 cut(s) 165, 198
BalI TGGCCA 1 cut(s) 467
BanI GGYRCC 2 cut(s) 62, 440
BarI GAAGNNNNNNTAC 2 cut(s) 215, 247
BccI CCATC 3 cut(s) 264, 457, 476
BciT130I CCWGG 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 84
BfmI CTRYAG 2 cut(s) 343, 478
Bme1390I CCNGG 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 403
BmgT120I GGNCC 1 cut(s) 403
BmiI GGNNCC 3 cut(s) 64, 404, 442
BmrFI CCNGG 1 cut(s) 142
BpmI CTGGAG 1 cut(s) 99
Bpu14I TTCGAA 1 cut(s) 251
BsaBI GATNNNNATC 2 cut(s) 390, 467
BsaJI CCNNGG 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse118I RCCGGY 1 cut(s) 119
Bse8I GATNNNNATC 2 cut(s) 390, 467
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 141
BseJI GATNNNNATC 2 cut(s) 390, 467
BseLI CCNNNNNNNGG 1 cut(s) 119
BseSI GKGCMC 1 cut(s) 445
BsgI GTGCAG 1 cut(s) 310
BshFI GGCC 2 cut(s) 50, 467
BshNI GGYRCC 2 cut(s) 62, 440
BsiSI CCGG 1 cut(s) 120
BslFI GGGAC 1 cut(s) 416
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 84
BsmBI CGTCTC 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 416
BsnI GGCC 2 cut(s) 50, 467
Bsp119I TTCGAA 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 445
Bsp143I GATC 2 cut(s) 197, 391
BspANI GGCC 2 cut(s) 50, 467
BspLI GGNNCC 3 cut(s) 64, 404, 442
BspMAI CTGCAG 1 cut(s) 347
BspPI GGATC 1 cut(s) 205
BspT104I TTCGAA 1 cut(s) 251
BspT107I GGYRCC 2 cut(s) 62, 440
BsrFI RCCGGY 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 2 cut(s) 197, 391
Bst2UI CCWGG 1 cut(s) 142
Bst4CI ACNGT 5 cut(s) 62, 85, 208, 331, 430
Bst6I CTCTTC 1 cut(s) 421
BstBI TTCGAA 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 121
BstKTI GATC 2 cut(s) 200, 394
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 2 cut(s) 197, 391
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 140
BstSFI CTRYAG 2 cut(s) 343, 478
BstSLI GKGCMC 1 cut(s) 445
BstXI CCANNNNNNTGG 1 cut(s) 463
BsuRI GGCC 2 cut(s) 50, 467
BtgZI GCGATG 1 cut(s) 476
BtsI GCAGTG 4 cut(s) 51, 340, 352, 456
BtsIMutI CAGTG 5 cut(s) 51, 293, 340, 352, 456
Cac8I GCNNGC 1 cut(s) 121
CaiI CAGNNNCTG 1 cut(s) 212
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 403
CspCI CAANNNNNGTGG 2 cut(s) 175, 210
DpnI GATC 2 cut(s) 199, 393
DpnII GATC 2 cut(s) 197, 391
EaeI YGGCCR 1 cut(s) 465
Eam1104I CTCTTC 1 cut(s) 421
EarI CTCTTC 1 cut(s) 421
Eco47I GGWCC 1 cut(s) 403
Eco57I CTGAAG 2 cut(s) 234, 402
EcoRII CCWGG 1 cut(s) 140
Esp3I CGTCTC 1 cut(s) 84
FaiI YATR 3 cut(s) 14, 270, 480
FaqI GGGAC 1 cut(s) 416
GsuI CTGGAG 1 cut(s) 99
HaeIII GGCC 2 cut(s) 50, 467
HapII CCGG 1 cut(s) 120
HinfI GANTC 2 cut(s) 7, 272
HpaII CCGG 1 cut(s) 120
HphI GGTGA 3 cut(s) 16, 376, 418
Hpy188I TCNGA 3 cut(s) 89, 165, 382
Hpy188III TCNNGA 1 cut(s) 373
HpyAV CCTTC 2 cut(s) 217, 355
HpyCH4III ACNGT 5 cut(s) 62, 85, 208, 331, 430
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 4 cut(s) 44, 284, 327, 345
HpySE526I ACGT 1 cut(s) 306
KroI GCCGGC 1 cut(s) 119
KroNI GCCGGC 1 cut(s) 121
Kzo9I GATC 2 cut(s) 197, 391
LpnPI CCDG 7 cut(s) 127, 129, 133, 154, 289, 294, 382
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 3 cut(s) 307, 314, 364
MalI GATC 2 cut(s) 199, 393
MboI GATC 2 cut(s) 197, 391
MboII GAAGA 6 cut(s) 26, 395, 408, 411, 463, 466
MhlI GDGCHC 1 cut(s) 445
MlsI TGGCCA 1 cut(s) 467
MluCI AATT 2 cut(s) 247, 487
MluNI TGGCCA 1 cut(s) 467
MlyI GAGTC 1 cut(s) 16
MmeI TCCRAC 2 cut(s) 67, 327
MnlI CCTC 3 cut(s) 123, 424, 461
Mox20I TGGCCA 1 cut(s) 467
MroNI GCCGGC 1 cut(s) 119
MscI TGGCCA 1 cut(s) 467
MseI TTAA 3 cut(s) 432, 486, 490
MslI CAYNNNNRTG 2 cut(s) 345, 461
Msp20I TGGCCA 1 cut(s) 467
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 1 cut(s) 120
MspR9I CCNGG 1 cut(s) 142
MvaI CCWGG 1 cut(s) 142
NaeI GCCGGC 1 cut(s) 121
NdeII GATC 2 cut(s) 197, 391
NgoMIV GCCGGC 1 cut(s) 119
NlaIV GGNNCC 3 cut(s) 64, 404, 442
NmuCI GTSAC 2 cut(s) 307, 364
NspV TTCGAA 1 cut(s) 251
OliI CACNNNNGTG 1 cut(s) 345
PacI TTAATTAA 1 cut(s) 490
PdiI GCCGGC 1 cut(s) 121
PfeI GAWTC 1 cut(s) 272
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 3 cut(s) 64, 404, 442
PspPI GGNCC 1 cut(s) 403
PstI CTGCAG 1 cut(s) 347
PstNI CAGNNNCTG 1 cut(s) 212
PvuII CAGCTG 1 cut(s) 71
RseI CAYNNNNRTG 2 cut(s) 345, 461
SaqAI TTAA 3 cut(s) 432, 486, 490
Sau3AI GATC 2 cut(s) 197, 391
Sau96I GGNCC 1 cut(s) 403
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 142
SduI GDGCHC 1 cut(s) 445
SetI ASST 7 cut(s) 73, 143, 214, 309, 337, 366, 485
SfcI CTRYAG 2 cut(s) 343, 478
SfuI TTCGAA 1 cut(s) 251
SinI GGWCC 1 cut(s) 403
SmiMI CAYNNNNRTG 2 cut(s) 345, 461
Sse9I AATT 2 cut(s) 247, 487
SspI AATATT 1 cut(s) 436
StyD4I CCNGG 1 cut(s) 140
TaaI ACNGT 5 cut(s) 62, 85, 208, 331, 430
TaiI ACGT 1 cut(s) 309
TaqI TCGA 2 cut(s) 221, 251
TasI AATT 2 cut(s) 247, 487
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 3 cut(s) 432, 486, 490
Tru9I TTAA 3 cut(s) 432, 486, 490
TscAI CASTG 5 cut(s) 51, 300, 347, 352, 463
TseFI GTSAC 2 cut(s) 307, 364
Tsp45I GTSAC 2 cut(s) 307, 364
TspDTI ATGAA 1 cut(s) 310
TspRI CASTG 5 cut(s) 51, 300, 347, 352, 463
VpaK11BI GGWCC 1 cut(s) 403
XapI RAATTY 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.