Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002685

Physical Location & Seq

Genomic Coordinates Forward (+)

20962912 .. 20965219

Gene Structure 2308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G246500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGTGTTCAGAAGGGCAAATGGGCAGCCGCAGCAGGGGGATGATGAACAAGATGAATATGGTGATGGCTTGCTTCGCGGTTATGGCGGTGGCTTTTCCTTCATTATTGAATTTGAAAGGTGCAACTGCAGAAGATTATGTTGTTGCTTCGGCTGGGCTGTTCCCCCGAACACCTCTTTCTATTCCGAATGGGCTGCCTCAAAGACGTTTCAGATAGGAGATGGACTTGTATTCAACTGGACTGGAGACCACAACGTGGGCGGAGTGGCATCAAAAGAAGAATACGATAACTGCATTGACCCAGGGATCGTGTTCGGCCCTGGAGTGAGGATCGCAATCAATTCTACTGATTCACTTTACTTCATCTGCACTGTTGGTGATCACTGCGAGCGAGGCCAAAAGGTCACCATCACCGTTGGATCAGCAGCCAACAACTCCGCTCCTCCTCCACCACCACCTTCATATGCTTCATCTCTCACTCCAACTACTCTCGGCTCTTTCATCATTTCCACACTAGTTGCCATTTCTTTCCTTAATCATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0015690 GO:0016020 GO:0019222 GO:0030001 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031326 GO:0033554 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070417 GO:0071944 GO:0072512 GO:1900376 GO:1901141 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

182

Amino Acids

19.53

Weight (kDa)

4.78

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02860 FvH4_1g02870 FvH4_1g02870 FvH4_1g02880 FvH4_2g09850
malus_domestica	MD02G1028300.v1.1 MD02G1028500.v1.1 MD02G1028600.v1.1 MD15G1170000.v1.1 MD15G1170100.v1.1
prunus_persica	Prupe.7G246400_v2.0.a1 Prupe.7G246500_v2.0.a1
pyrus_communis	pycom02g02330 pycom15g15170
rosa_chinensis	RchiOBHm_Chr2g0087971 RchiOBHm_Chr2g0087981 RchiOBHm_Chr2g0087991
rosa_laevigata	RLG00000015915 RLG00000015916 RLG00000015917
rosa_multiflora	Rmu_sc0003275.1_g000003 Rmu_sc0003275.1_g000004 Rmu_sc0003275.1_g000007
rosa_roxburghii	Rroxscaffold_2G00153070 Rroxscaffold_2G00153090
rosa_rugosa	Rorug01G0480200 Rorug01G0480200
rosa_samantha	Rh2AG034800 Rh2AG034900 Rh2AG035000 Rh2BG033800 Rh2BG033900 Rh2BG034000 Rh2CG034800 Rh2CG034900 Rh2CG035000 Rh2DG034600
rosa_wichuraiana	Rw2G002720 Rw2G002730 Rw2G002750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	256
AccBSI	CCGCTC	1 cut(s)	440
AccII	CGCG	1 cut(s)	78
AciI	CCGC	5 cut(s)	29, 78, 87, 261, 438
AclWI	GGATC	3 cut(s)	314, 338, 427
AcsI	RAATTY	1 cut(s)	110
AdeI	CACNNNGTG	1 cut(s)	256
AfiI	CCNNNNNNNGG	2 cut(s)	35, 256
AgsI	TTSAA	3 cut(s)	110, 116, 235
AhlI	ACTAGT	1 cut(s)	514
AjnI	CCWGG	2 cut(s)	301, 319
Alw26I	GTCTC	1 cut(s)	240
AlwI	GGATC	3 cut(s)	314, 338, 427
AoxI	GGCC	2 cut(s)	316, 394
ApeKI	GCWGC	4 cut(s)	25, 31, 194, 425
ApoI	RAATTY	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	317
AsuHPI	GGTGA	4 cut(s)	74, 389, 397, 403
BbvI	GCAGC	4 cut(s)	37, 43, 181, 437
BccI	CCATC	3 cut(s)	59, 215, 416
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	2 cut(s)	303, 321
BclI	TGATCA	1 cut(s)	379
BcoDI	GTCTC	1 cut(s)	240
BcuI	ACTAGT	1 cut(s)	514
BfaI	CTAG	1 cut(s)	515
BfmI	CTRYAG	1 cut(s)	127
BisI	GCNGC	5 cut(s)	26, 29, 32, 195, 426
BlsI	GCNGC	5 cut(s)	27, 30, 33, 196, 427
Bme1390I	CCNGG	2 cut(s)	303, 321
BmgT120I	GGNCC	1 cut(s)	317
BmrFI	CCNGG	2 cut(s)	303, 321
BmsI	GCATC	1 cut(s)	278
BpmI	CTGGAG	2 cut(s)	264, 342
BsaBI	GATNNNNATC	1 cut(s)	335
BsaI	GGTCTC	1 cut(s)	240
BsaJI	CCNNGG	3 cut(s)	301, 302, 319
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 256
Bse1I	ACTGG	2 cut(s)	242, 247
Bse8I	GATNNNNATC	1 cut(s)	335
BseBI	CCWGG	2 cut(s)	303, 321
BseDI	CCNNGG	3 cut(s)	301, 302, 319
BseGI	GGATG	1 cut(s)	46
BseJI	GATNNNNATC	1 cut(s)	335
BseLI	CCNNNNNNNGG	2 cut(s)	35, 256
BseNI	ACTGG	2 cut(s)	242, 247
BseRI	GAGGAG	2 cut(s)	432, 435
BseXI	GCAGC	4 cut(s)	37, 43, 181, 437
BseYI	CCCAGC	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	352
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	318, 396
BslI	CCNNNNNNNGG	2 cut(s)	35, 256
BsmAI	GTCTC	1 cut(s)	240
BsnI	GGCC	2 cut(s)	318, 396
Bso31I	GGTCTC	1 cut(s)	240
Bsp143I	GATC	4 cut(s)	306, 330, 379, 419
BspACI	CCGC	5 cut(s)	29, 78, 87, 261, 438
BspANI	GGCC	2 cut(s)	318, 396
BspFNI	CGCG	1 cut(s)	78
BspMAI	CTGCAG	1 cut(s)	131
BspPI	GGATC	3 cut(s)	314, 338, 427
BspTNI	GGTCTC	1 cut(s)	240
BsrBI	CCGCTC	1 cut(s)	440
BsrI	ACTGG	2 cut(s)	242, 247
BssECI	CCNNGG	3 cut(s)	301, 302, 319
BssMI	GATC	4 cut(s)	306, 330, 379, 419
Bst2UI	CCWGG	2 cut(s)	303, 321
Bst4CI	ACNGT	2 cut(s)	373, 415
BstC8I	GCNNGC	2 cut(s)	71, 389
BstEII	GGTNACC	1 cut(s)	403
BstF5I	GGATG	1 cut(s)	46
BstFNI	CGCG	1 cut(s)	78
BstKTI	GATC	4 cut(s)	309, 333, 382, 422
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	4 cut(s)	306, 330, 379, 419
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 75, 84, 393
BstNI	CCWGG	2 cut(s)	303, 321
BstPI	GGTNACC	1 cut(s)	403
BstSCI	CCNGG	2 cut(s)	301, 319
BstSFI	CTRYAG	1 cut(s)	127
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	4 cut(s)	37, 43, 181, 437
BsuRI	GGCC	2 cut(s)	318, 396
BtsCI	GGATG	1 cut(s)	46
BtsI	GCAGTG	1 cut(s)	382
BtsIMutI	CAGTG	2 cut(s)	369, 382
Cac8I	GCNNGC	2 cut(s)	71, 389
Cfr13I	GGNCC	1 cut(s)	317
CspCI	CAANNNNNGTGG	2 cut(s)	499, 534
DpnI	GATC	4 cut(s)	308, 332, 381, 421
DpnII	GATC	4 cut(s)	306, 330, 379, 419
DraIII	CACNNNGTG	1 cut(s)	256
EciI	GGCGGA	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	240
Eco91I	GGTNACC	1 cut(s)	403
EcoO65I	GGTNACC	1 cut(s)	403
EcoRII	CCWGG	2 cut(s)	301, 319
FaiI	YATR	5 cut(s)	60, 84, 139, 463, 465
FauNDI	CATATG	1 cut(s)	463
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	5 cut(s)	26, 29, 32, 195, 426
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	5 cut(s)	26, 29, 32, 195, 426
FspBI	CTAG	1 cut(s)	515
GluI	GCNGC	5 cut(s)	26, 29, 32, 195, 426
GsaI	CCCAGC	1 cut(s)	157
GsuI	CTGGAG	2 cut(s)	264, 342
HaeIII	GGCC	2 cut(s)	318, 396
HinfI	GANTC	1 cut(s)	350
HphI	GGTGA	4 cut(s)	74, 389, 397, 403
Hpy188I	TCNGA	3 cut(s)	11, 187, 213
HpyAV	CCTTC	3 cut(s)	6, 109, 468
HpyCH4III	ACNGT	2 cut(s)	373, 415
HpyCH4IV	ACGT	2 cut(s)	206, 255
HpyCH4V	TGCA	4 cut(s)	123, 129, 294, 369
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 75, 84, 393
HpySE526I	ACGT	2 cut(s)	206, 255
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	4 cut(s)	306, 330, 379, 419
LmnI	GCTCC	1 cut(s)	445
LpnPI	CCDG	8 cut(s)	20, 139, 223, 228, 288, 306, 315, 333
Lsp1109I	GCAGC	4 cut(s)	37, 43, 181, 437
LweI	GCATC	1 cut(s)	278
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	2 cut(s)	206, 255
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	4 cut(s)	308, 332, 381, 421
MbiI	CCGCTC	1 cut(s)	440
MboI	GATC	4 cut(s)	306, 330, 379, 419
MboII	GAAGA	2 cut(s)	144, 290
MluCI	AATT	2 cut(s)	110, 340
MmeI	TCCRAC	2 cut(s)	397, 506
MnlI	CCTC	6 cut(s)	184, 208, 321, 386, 453, 456
MseI	TTAA	2 cut(s)	534, 544
MspR9I	CCNGG	2 cut(s)	303, 321
MvaI	CCWGG	2 cut(s)	303, 321
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	4 cut(s)	31, 75, 84, 393
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	4 cut(s)	306, 330, 379, 419
NmeAIII	GCCGAG	1 cut(s)	471
NmuCI	GTSAC	1 cut(s)	403
PasI	CCCWGGG	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	350
PflMI	CCANNNNNTGG	1 cut(s)	256
PkrI	GCNGC	5 cut(s)	27, 30, 33, 196, 427
Psp6I	CCWGG	2 cut(s)	301, 319
PspEI	GGTNACC	1 cut(s)	403
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	2 cut(s)	301, 319
PspPI	GGNCC	1 cut(s)	317
PstI	CTGCAG	1 cut(s)	131
SaqAI	TTAA	2 cut(s)	534, 544
SatI	GCNGC	5 cut(s)	26, 29, 32, 195, 426
Sau3AI	GATC	4 cut(s)	306, 330, 379, 419
Sau96I	GGNCC	1 cut(s)	317
ScrFI	CCNGG	2 cut(s)	303, 321
SetI	ASST	6 cut(s)	122, 176, 209, 258, 405, 460
SfaNI	GCATC	1 cut(s)	278
SfcI	CTRYAG	1 cut(s)	127
SpeI	ACTAGT	1 cut(s)	514
Sse9I	AATT	2 cut(s)	110, 340
SsiI	CCGC	5 cut(s)	29, 78, 87, 261, 438
SspMI	CTAG	1 cut(s)	515
StyD4I	CCNGG	2 cut(s)	301, 319
TaaI	ACNGT	2 cut(s)	373, 415
TaiI	ACGT	2 cut(s)	209, 258
TasI	AATT	2 cut(s)	110, 340
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	2 cut(s)	534, 544
Tru9I	TTAA	2 cut(s)	534, 544
TscAI	CASTG	2 cut(s)	376, 389
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	4 cut(s)	25, 31, 194, 425
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	7 cut(s)	60, 69, 91, 352, 450, 459, 490
TspRI	CASTG	2 cut(s)	376, 389
Van91I	CCANNNNNTGG	1 cut(s)	256
XapI	RAATTY	1 cut(s)	110
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.