FvH4_1g02870

Cucumber peeling cupredoxin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002685
Physical Location & Seq
Reverse (-)
1638039 .. 1639509
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02870.t2

Sequence Viewer

Length: 369 bp
ATGGCAAGCTTTAGGAATAAGAATACGAATACGAATATGCTAGCTTGCTTAAGCTTAATGGTTGTTATGGTGGGTTTGATGAAGGGTGCAACAGCAGTAGAATATGTAGTTGGTGACAGCTTAGGCTGGACTCTTCCACCAAACACCTCCTTGTATTCAGATTGGGCTGCCTCCAAGACATTTCAGTTAGGCGATAGAGTTTTCTTCAACTGGACTGGAAATCATAACGTGGCGCTACCAACTAAGGAACAATATGACAACTGCAGTGACCTGCAATCCAATCTTGGTAGTCCGGTGAGCGTGGAACTTACTGCTGGCTCTAACTACTATTTCTGCACCGTTGGCGACCACTGTAAGGCCAGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

123

Amino Acids

13.41

Weight (kDa)

6.69

Isoelectric Point (pI)

37.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 43 - 120 6.6e-16 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 279
AfiI CCNNNNNNNGG 1 cut(s) 355
AflII CTTAAG 1 cut(s) 49
AgsI TTSAA 1 cut(s) 208
AjuI GAANNNNNNNTTGG 2 cut(s) 93, 125
AluBI AGCT 4 cut(s) 9, 44, 54, 120
AluI AGCT 4 cut(s) 9, 44, 54, 120
AoxI GGCC 1 cut(s) 357
ApeKI GCWGC 1 cut(s) 167
AspLEI GCGC 1 cut(s) 235
AsuHPI GGTGA 2 cut(s) 125, 307
AsuNHI GCTAGC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 154
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 262
BfoI RGCGCY 1 cut(s) 236
BfrI CTTAAG 1 cut(s) 49
BfuAI ACCTGC 1 cut(s) 279
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
BmtI GCTAGC 1 cut(s) 44
Bpu10I CCTNAGC 1 cut(s) 121
BsaWI WCCGGW 1 cut(s) 292
Bsc4I CCNNNNNNNGG 1 cut(s) 355
Bse1I ACTGG 2 cut(s) 215, 220
BseLI CCNNNNNNNGG 1 cut(s) 355
BseNI ACTGG 2 cut(s) 215, 220
BseXI GCAGC 1 cut(s) 154
BsgI GTGCAG 1 cut(s) 319
BshFI GGCC 1 cut(s) 359
BsiSI CCGG 1 cut(s) 293
BslI CCNNNNNNNGG 1 cut(s) 355
BsnI GGCC 1 cut(s) 359
BspANI GGCC 1 cut(s) 359
BspMAI CTGCAG 1 cut(s) 266
BspMI ACCTGC 1 cut(s) 279
BspOI GCTAGC 1 cut(s) 44
BspTI CTTAAG 1 cut(s) 49
BsrI ACTGG 2 cut(s) 215, 220
Bst4CI ACNGT 2 cut(s) 340, 353
Bst6I CTCTTC 1 cut(s) 138
BstAFI CTTAAG 1 cut(s) 49
BstC8I GCNNGC 4 cut(s) 7, 42, 46, 316
BstDEI CTNAG 2 cut(s) 121, 243
BstH2I RGCGCY 1 cut(s) 236
BstHHI GCGC 1 cut(s) 235
BstMWI GCNNNNNNNGC 1 cut(s) 342
BstSFI CTRYAG 1 cut(s) 262
BstV1I GCAGC 1 cut(s) 154
BsuRI GGCC 1 cut(s) 359
BtsI GCAGTG 1 cut(s) 271
BtsIMutI CAGTG 2 cut(s) 271, 349
BveI ACCTGC 1 cut(s) 279
Cac8I GCNNGC 4 cut(s) 7, 42, 46, 316
CfoI GCGC 1 cut(s) 235
CviJI RGCY 8 cut(s) 9, 44, 54, 120, 126, 167, 318, 359
CviKI_1 RGCY 8 cut(s) 9, 44, 54, 120, 126, 167, 318, 359
DdeI CTNAG 2 cut(s) 121, 243
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
FaiI YATR 5 cut(s) 38, 68, 105, 225, 255
Fnu4HI GCNGC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 1 cut(s) 41
GlaI GCGC 1 cut(s) 234
GluI GCNGC 1 cut(s) 168
HaeII RGCGCY 1 cut(s) 236
HaeIII GGCC 1 cut(s) 359
HapII CCGG 1 cut(s) 293
HhaI GCGC 1 cut(s) 235
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HindIII AAGCTT 2 cut(s) 7, 52
HinfI GANTC 1 cut(s) 130
HpaII CCGG 1 cut(s) 293
HphI GGTGA 2 cut(s) 125, 307
Hpy188I TCNGA 1 cut(s) 160
HpyAV CCTTC 2 cut(s) 76, 357
HpyCH4III ACNGT 2 cut(s) 340, 353
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 4 cut(s) 89, 264, 274, 336
HpyF10VI GCNNNNNNNGC 1 cut(s) 342
HpyF3I CTNAG 2 cut(s) 121, 243
HpySE526I ACGT 1 cut(s) 228
HspAI GCGC 1 cut(s) 233
LpnPI CCDG 6 cut(s) 112, 196, 201, 284, 300, 306
Lsp1109I GCAGC 1 cut(s) 154
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 2 cut(s) 113, 266
MboII GAAGA 2 cut(s) 125, 196
MlyI GAGTC 1 cut(s) 124
MnlI CCTC 2 cut(s) 157, 181
MseI TTAA 2 cut(s) 50, 56
MspCI CTTAAG 1 cut(s) 49
MspI CCGG 1 cut(s) 293
MwoI GCNNNNNNNGC 1 cut(s) 342
NheI GCTAGC 1 cut(s) 40
NmuCI GTSAC 2 cut(s) 113, 266
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PstI CTGCAG 1 cut(s) 266
SaqAI TTAA 2 cut(s) 50, 56
SatI GCNGC 1 cut(s) 168
SchI GAGTC 1 cut(s) 124
SetI ASST 8 cut(s) 11, 46, 56, 122, 149, 231, 273, 368
SfcI CTRYAG 1 cut(s) 262
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
SspMI CTAG 1 cut(s) 41
TaaI ACNGT 2 cut(s) 340, 353
TaiI ACGT 1 cut(s) 231
Tru1I TTAA 2 cut(s) 50, 56
Tru9I TTAA 2 cut(s) 50, 56
TscAI CASTG 2 cut(s) 271, 356
TseFI GTSAC 2 cut(s) 113, 266
TseI GCWGC 1 cut(s) 167
Tsp45I GTSAC 2 cut(s) 113, 266
TspDTI ATGAA 1 cut(s) 95
TspRI CASTG 2 cut(s) 271, 356
Vha464I CTTAAG 1 cut(s) 49
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.