pycom02g02330

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0002685
Physical Location & Seq
Reverse (-)
1432995 .. 1433989
995 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g02330.1

Sequence Viewer

Length: 519 bp
ATGGTGAGTCAAAAGGGATTGATCGGTTGCTTGCTTCTTATTGTAGTGGCCTTGTGGAAGGGTGCCACAGCTGAAACCTACACTGTTGGGGATGATTTAGGCTGGACTATTCCTCCAGCTGGCTCTGTTGCCTATTCCACCTGGGCTAACGCAAAGAGATTTCAGATTGGTGATACAATAGAATTCAAATGGAGCGGGGAACACAGAGTAGCTGAAGTAACACAGGCTGATTACGATAGCTGCTCAAAGGACAACCCTCTTGGTTTCTATGATTCCAGCCCTACAAGAATTGTACTGACGTCCAACTTGACCCGTTACTTCATATGCACGGAAGATAGTCACTGCAGTAGATTAGGGCAGAAGGTGACTATCAGAATTGGAGGAGATTATTCTTCATCAGGAGATAACGATGATGATGATCATTGGTGGGAATGGAACGGCGCTTCTTCTCTCAGCCTTAATATTGTTGCCCTAATCCTCTGCACTGCACTAGTCATCTCCTTCCTTAGCTTTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

173

Amino Acids

18.91

Weight (kDa)

4.66

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 35 - 116 5.2e-21 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 302
AccB1I GGYRCC 1 cut(s) 62
AccBSI CCGCTC 1 cut(s) 195
AciI CCGC 1 cut(s) 195
AcsI RAATTY 1 cut(s) 182
AcuI CTGAAG 1 cut(s) 234
AcyI GRCGYC 1 cut(s) 299
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 1 cut(s) 187
AhlI ACTAGT 1 cut(s) 490
AjnI CCWGG 1 cut(s) 140
AluBI AGCT 5 cut(s) 71, 119, 212, 240, 510
AluI AGCT 5 cut(s) 71, 119, 212, 240, 510
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 240
ApoI RAATTY 1 cut(s) 182
AspLEI GCGC 1 cut(s) 443
AsuHPI GGTGA 3 cut(s) 16, 182, 376
BanI GGYRCC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 227
BceAI ACGGC 1 cut(s) 454
BciT130I CCWGG 1 cut(s) 142
BclI TGATCA 1 cut(s) 418
BcuI ACTAGT 1 cut(s) 490
BfaI CTAG 1 cut(s) 491
BfmI CTRYAG 1 cut(s) 343
BfoI RGCGCY 1 cut(s) 444
BisI GCNGC 1 cut(s) 241
BlsI GCNGC 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 142
BpmI CTGGAG 1 cut(s) 99
Bpu10I CCTNAGC 1 cut(s) 506
BsaBI GATNNNNATC 1 cut(s) 417
BsaHI GRCGYC 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse8I GATNNNNATC 1 cut(s) 417
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 97
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMII CTCAG 1 cut(s) 466
BseRI GAGGAG 1 cut(s) 396
BseXI GCAGC 1 cut(s) 227
BsgI GTGCAG 2 cut(s) 466, 471
BshFI GGCC 1 cut(s) 50
BshNI GGYRCC 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 119
BsnI GGCC 1 cut(s) 50
Bsp143I GATC 2 cut(s) 21, 418
BspACI CCGC 1 cut(s) 195
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 465
BspLI GGNNCC 1 cut(s) 64
BspMAI CTGCAG 1 cut(s) 347
BspT107I GGYRCC 1 cut(s) 62
BsrBI CCGCTC 1 cut(s) 195
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 2 cut(s) 21, 418
BssNI GRCGYC 1 cut(s) 299
Bst2UI CCWGG 1 cut(s) 142
Bst4CI ACNGT 1 cut(s) 85
BstACI GRCGYC 1 cut(s) 299
BstC8I GCNNGC 2 cut(s) 32, 121
BstDEI CTNAG 2 cut(s) 452, 506
BstF5I GGATG 1 cut(s) 97
BstH2I RGCGCY 1 cut(s) 444
BstHHI GCGC 1 cut(s) 443
BstKTI GATC 2 cut(s) 24, 421
BstMBI GATC 2 cut(s) 21, 418
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 140
BstSFI CTRYAG 1 cut(s) 343
BstV1I GCAGC 1 cut(s) 227
BsuRI GGCC 1 cut(s) 50
BtsCI GGATG 1 cut(s) 97
BtsI GCAGTG 2 cut(s) 340, 483
BtsIMutI CAGTG 3 cut(s) 81, 340, 483
Cac8I GCNNGC 2 cut(s) 32, 121
CfoI GCGC 1 cut(s) 443
Csp6I GTAC 1 cut(s) 293
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 2 cut(s) 452, 506
DpnI GATC 2 cut(s) 23, 420
DpnII GATC 2 cut(s) 21, 418
Eco57I CTGAAG 1 cut(s) 234
EcoRI GAATTC 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 140
FaiI YATR 3 cut(s) 270, 323, 325
FauI CCCGC 1 cut(s) 188
FauNDI CATATG 1 cut(s) 323
FbaI TGATCA 1 cut(s) 418
Fnu4HI GCNGC 1 cut(s) 241
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 1 cut(s) 241
FspBI CTAG 1 cut(s) 491
GlaI GCGC 1 cut(s) 442
GluI GCNGC 1 cut(s) 241
GsuI CTGGAG 1 cut(s) 99
HaeII RGCGCY 1 cut(s) 444
HaeIII GGCC 1 cut(s) 50
HhaI GCGC 1 cut(s) 443
Hin1I GRCGYC 1 cut(s) 299
Hin6I GCGC 1 cut(s) 441
HinP1I GCGC 1 cut(s) 441
HinfI GANTC 2 cut(s) 7, 272
HphI GGTGA 3 cut(s) 16, 182, 376
Hpy188I TCNGA 2 cut(s) 165, 374
Hpy188III TCNNGA 1 cut(s) 399
HpyAV CCTTC 3 cut(s) 52, 355, 511
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 299
HpyCH4V TGCA 4 cut(s) 327, 345, 483, 488
HpyF3I CTNAG 2 cut(s) 452, 506
HpySE526I ACGT 1 cut(s) 299
Hsp92I GRCGYC 1 cut(s) 299
HspAI GCGC 1 cut(s) 441
Ksp22I TGATCA 1 cut(s) 418
Kzo9I GATC 2 cut(s) 21, 418
LmnI GCTCC 1 cut(s) 192
LpnPI CCDG 8 cut(s) 88, 105, 127, 129, 154, 209, 289, 384
Lsp1109I GCAGC 1 cut(s) 227
MaeI CTAG 1 cut(s) 491
MaeII ACGT 1 cut(s) 299
MaeIII GTNAC 4 cut(s) 217, 314, 338, 364
MalI GATC 2 cut(s) 23, 420
MbiI CCGCTC 1 cut(s) 195
MboI GATC 2 cut(s) 21, 418
MboII GAAGA 3 cut(s) 344, 384, 438
MluCI AATT 3 cut(s) 182, 288, 375
MlyI GAGTC 1 cut(s) 16
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 4 cut(s) 123, 267, 374, 488
MseI TTAA 2 cut(s) 459, 513
MspA1I CMGCKG 2 cut(s) 71, 119
MspR9I CCNGG 1 cut(s) 142
MvaI CCWGG 1 cut(s) 142
NdeI CATATG 1 cut(s) 323
NdeII GATC 2 cut(s) 21, 418
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 2 cut(s) 338, 364
PfeI GAWTC 1 cut(s) 272
PkrI GCNGC 1 cut(s) 242
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 64
PstI CTGCAG 1 cut(s) 347
PvuII CAGCTG 2 cut(s) 71, 119
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
SaqAI TTAA 2 cut(s) 459, 513
SatI GCNGC 1 cut(s) 241
Sau3AI GATC 2 cut(s) 21, 418
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 142
SetI ASST 9 cut(s) 73, 80, 121, 143, 214, 242, 302, 366, 512
SfcI CTRYAG 1 cut(s) 343
SpeI ACTAGT 1 cut(s) 490
Sse9I AATT 3 cut(s) 182, 288, 375
SsiI CCGC 1 cut(s) 195
SspI AATATT 1 cut(s) 463
SspMI CTAG 1 cut(s) 491
StyD4I CCNGG 1 cut(s) 140
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 1 cut(s) 302
TasI AATT 3 cut(s) 182, 288, 375
TatI WGTACW 1 cut(s) 292
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 2 cut(s) 459, 513
Tru9I TTAA 2 cut(s) 459, 513
TscAI CASTG 3 cut(s) 88, 347, 490
TseFI GTSAC 2 cut(s) 338, 364
TseI GCWGC 1 cut(s) 240
Tsp45I GTSAC 2 cut(s) 338, 364
TspDTI ATGAA 2 cut(s) 310, 384
TspGWI ACGGA 1 cut(s) 344
TspRI CASTG 3 cut(s) 88, 347, 490
XapI RAATTY 1 cut(s) 182
XspI CTAG 1 cut(s) 491
ZraI GACGTC 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.