Prupe.7G246400_v2.0.a1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0002685
Physical Location & Seq
Forward (+)
20961299 .. 20962330
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G246400.1

Sequence Viewer

Length: 495 bp
ATGGCTAATCAGATGGGCTTACATATTGGTTGCTTGCTTCTTGTTGTTGCGGTGGCCCTGTTGAAGGGTGCCGCAGCTGATAATTACACTGTTGGAGACGATTTAGGCTGGACCATTCCTCCAGCGGGGTCTATAGCCTATAAAACCTGGGCTAACAAAAAGAACTTTCAGATTGGTGACACAATAGTATTTAACTGGACTGGGTCACACACAGTAGCTGAAGTATCAGAGGCTAATTACGGGAACTGCACAAAGTCGAATCCTTTGGCTTTGTATGATTCAAGCCCTGTACCAATTCCACTGACGTCCAACTTGACCCGATACTTCATATGCACGGTAGACAATCACTGCAGTGGTTTGGGACAGAAGGTGACTATCAAAATTGGAGGAGATGATGATCGCTGGTGGGAAGGGAACAGCGCTTCTTCTCCCACCCTTAATATCGCTGCCTTGTTGTTCTGCAGTGCCATAGCAGCCTTCTTCTTGAGCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

165

Amino Acids

17.54

Weight (kDa)

5.42

Isoelectric Point (pI)

26.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 308
AccB1I GGYRCC 1 cut(s) 68
AccI GTMKAC 1 cut(s) 339
AciI CCGC 3 cut(s) 50, 72, 125
AcuI CTGAAG 1 cut(s) 240
AcyI GRCGYC 1 cut(s) 305
AfaI GTAC 1 cut(s) 291
AfeI AGCGCT 1 cut(s) 421
AfiI CCNNNNNNNGG 2 cut(s) 64, 125
AgsI TTSAA 2 cut(s) 64, 282
AjnI CCWGG 1 cut(s) 146
AleI CACNNNNGTG 1 cut(s) 351
AluBI AGCT 3 cut(s) 77, 218, 489
AluI AGCT 3 cut(s) 77, 218, 489
Alw26I GTCTC 1 cut(s) 90
AlwNI CAGNNNCTG 1 cut(s) 218
Aor51HI AGCGCT 1 cut(s) 421
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 3 cut(s) 74, 446, 473
AspLEI GCGC 1 cut(s) 422
AspS9I GGNCC 2 cut(s) 55, 111
AsuHPI GGTGA 2 cut(s) 188, 382
AvaII GGWCC 1 cut(s) 111
BanI GGYRCC 1 cut(s) 68
BbvI GCAGC 3 cut(s) 86, 433, 485
BccI CCATC 1 cut(s) 7
BciT130I CCWGG 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 90
BfmI CTRYAG 3 cut(s) 132, 349, 460
BfoI RGCGCY 1 cut(s) 423
BisI GCNGC 4 cut(s) 72, 75, 447, 474
BlsI GCNGC 4 cut(s) 73, 76, 448, 475
Bme1390I CCNGG 1 cut(s) 148
Bme18I GGWCC 1 cut(s) 111
BmgT120I GGNCC 2 cut(s) 55, 111
BmiI GGNNCC 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 148
BmrI ACTGGG 1 cut(s) 210
BmuI ACTGGG 1 cut(s) 210
BpmI CTGGAG 1 cut(s) 105
BsaBI GATNNNNATC 1 cut(s) 396
BsaHI GRCGYC 1 cut(s) 305
BsaJI CCNNGG 1 cut(s) 147
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 125
Bse1I ACTGG 2 cut(s) 200, 205
Bse8I GATNNNNATC 1 cut(s) 396
BseBI CCWGG 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 147
BseJI GATNNNNATC 1 cut(s) 396
BseLI CCNNNNNNNGG 2 cut(s) 64, 125
BseNI ACTGG 2 cut(s) 200, 205
BseRI GAGGAG 1 cut(s) 402
BseXI GCAGC 3 cut(s) 86, 433, 485
BsgI GTGCAG 1 cut(s) 232
BshFI GGCC 1 cut(s) 56
BshNI GGYRCC 1 cut(s) 68
BslFI GGGAC 1 cut(s) 375
BslI CCNNNNNNNGG 2 cut(s) 64, 125
BsmAI GTCTC 1 cut(s) 90
BsmBI CGTCTC 1 cut(s) 90
BsmFI GGGAC 1 cut(s) 375
BsnI GGCC 1 cut(s) 56
Bsp143I GATC 1 cut(s) 397
BspACI CCGC 3 cut(s) 50, 72, 125
BspANI GGCC 1 cut(s) 56
BspLI GGNNCC 1 cut(s) 70
BspMAI CTGCAG 2 cut(s) 353, 464
BspT107I GGYRCC 1 cut(s) 68
BsrI ACTGG 2 cut(s) 200, 205
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 1 cut(s) 397
BssNI GRCGYC 1 cut(s) 305
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 3 cut(s) 91, 214, 337
BstACI GRCGYC 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 35
BstENI CCTNNNNNAGG 1 cut(s) 62
BstH2I RGCGCY 1 cut(s) 423
BstHHI GCGC 1 cut(s) 422
BstKTI GATC 1 cut(s) 400
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 1 cut(s) 397
BstMWI GCNNNNNNNGC 1 cut(s) 473
BstNI CCWGG 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 146
BstSFI CTRYAG 3 cut(s) 132, 349, 460
BstV1I GCAGC 3 cut(s) 86, 433, 485
BsuRI GGCC 1 cut(s) 56
BtsI GCAGTG 3 cut(s) 346, 358, 469
BtsIMutI CAGTG 5 cut(s) 87, 299, 346, 358, 469
Cac8I GCNNGC 1 cut(s) 35
CaiI CAGNNNCTG 1 cut(s) 218
CfoI GCGC 1 cut(s) 422
Cfr13I GGNCC 2 cut(s) 55, 111
Csp6I GTAC 1 cut(s) 290
CviQI GTAC 1 cut(s) 290
DpnI GATC 1 cut(s) 399
DpnII GATC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 111
Eco47III AGCGCT 1 cut(s) 421
Eco57I CTGAAG 1 cut(s) 240
EcoNI CCTNNNNNAGG 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 146
Esp3I CGTCTC 1 cut(s) 90
FaiI YATR 7 cut(s) 24, 134, 141, 276, 329, 331, 470
FaqI GGGAC 1 cut(s) 375
FauI CCCGC 1 cut(s) 118
FauNDI CATATG 1 cut(s) 329
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 4 cut(s) 72, 75, 447, 474
Fsp4HI GCNGC 4 cut(s) 72, 75, 447, 474
GlaI GCGC 1 cut(s) 421
GluI GCNGC 4 cut(s) 72, 75, 447, 474
GsuI CTGGAG 1 cut(s) 105
HaeII RGCGCY 1 cut(s) 423
HaeIII GGCC 1 cut(s) 56
HhaI GCGC 1 cut(s) 422
Hin1I GRCGYC 1 cut(s) 305
Hin6I GCGC 1 cut(s) 420
HinP1I GCGC 1 cut(s) 420
HinfI GANTC 2 cut(s) 259, 278
HphI GGTGA 2 cut(s) 188, 382
Hpy166II GTNNAC 1 cut(s) 340
Hpy188I TCNGA 3 cut(s) 12, 171, 229
Hpy188III TCNNGA 1 cut(s) 484
Hpy8I GTNNAC 1 cut(s) 340
HpyAV CCTTC 4 cut(s) 58, 361, 404, 487
HpyCH4III ACNGT 3 cut(s) 91, 214, 337
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 4 cut(s) 249, 333, 351, 462
HpyF10VI GCNNNNNNNGC 1 cut(s) 473
HpySE526I ACGT 1 cut(s) 305
Hsp92I GRCGYC 1 cut(s) 305
HspAI GCGC 1 cut(s) 420
Kzo9I GATC 1 cut(s) 397
LpnPI CCDG 9 cut(s) 71, 94, 133, 135, 160, 181, 186, 300, 388
Lsp1109I GCAGC 3 cut(s) 86, 433, 485
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 3 cut(s) 176, 204, 370
MalI GATC 1 cut(s) 399
MboI GATC 1 cut(s) 397
MboII GAAGA 2 cut(s) 417, 472
MluCI AATT 4 cut(s) 82, 235, 294, 381
MmeI TCCRAC 2 cut(s) 73, 333
MnlI CCTC 3 cut(s) 129, 223, 380
MseI TTAA 2 cut(s) 192, 438
MslI CAYNNNNRTG 1 cut(s) 351
MspA1I CMGCKG 2 cut(s) 77, 125
MspR9I CCNGG 1 cut(s) 148
MvaI CCWGG 1 cut(s) 148
MwoI GCNNNNNNNGC 1 cut(s) 473
NdeI CATATG 1 cut(s) 329
NdeII GATC 1 cut(s) 397
NlaIV GGNNCC 1 cut(s) 70
NmuCI GTSAC 3 cut(s) 176, 204, 370
OliI CACNNNNGTG 1 cut(s) 351
PfeI GAWTC 2 cut(s) 259, 278
PflFI GACNNNGTC 1 cut(s) 202
PkrI GCNGC 4 cut(s) 73, 76, 448, 475
Psp6I CCWGG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 70
PspPI GGNCC 2 cut(s) 55, 111
PstI CTGCAG 2 cut(s) 353, 464
PstNI CAGNNNCTG 1 cut(s) 218
PsyI GACNNNGTC 1 cut(s) 202
PvuII CAGCTG 1 cut(s) 77
RsaI GTAC 1 cut(s) 291
RsaNI GTAC 1 cut(s) 290
RseI CAYNNNNRTG 1 cut(s) 351
SaqAI TTAA 2 cut(s) 192, 438
SatI GCNGC 4 cut(s) 72, 75, 447, 474
Sau3AI GATC 1 cut(s) 397
Sau96I GGNCC 2 cut(s) 55, 111
ScrFI CCNGG 1 cut(s) 148
SetI ASST 6 cut(s) 79, 149, 220, 308, 372, 491
SfcI CTRYAG 3 cut(s) 132, 349, 460
SinI GGWCC 1 cut(s) 111
SmiMI CAYNNNNRTG 1 cut(s) 351
SmlI CTYRAG 1 cut(s) 484
SmoI CTYRAG 1 cut(s) 484
Sse9I AATT 4 cut(s) 82, 235, 294, 381
SsiI CCGC 3 cut(s) 50, 72, 125
StyD4I CCNGG 1 cut(s) 146
TaaI ACNGT 3 cut(s) 91, 214, 337
TaiI ACGT 1 cut(s) 308
TaqI TCGA 1 cut(s) 257
TasI AATT 4 cut(s) 82, 235, 294, 381
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 2 cut(s) 259, 278
Tru1I TTAA 2 cut(s) 192, 438
Tru9I TTAA 2 cut(s) 192, 438
TscAI CASTG 5 cut(s) 94, 306, 353, 358, 469
TseFI GTSAC 3 cut(s) 176, 204, 370
TseI GCWGC 3 cut(s) 74, 446, 473
Tsp45I GTSAC 3 cut(s) 176, 204, 370
TspDTI ATGAA 1 cut(s) 316
TspRI CASTG 5 cut(s) 94, 306, 353, 358, 469
Tth111I GACNNNGTC 1 cut(s) 202
VpaK11BI GGWCC 1 cut(s) 111
XagI CCTNNNNNAGG 1 cut(s) 62
XmiI GTMKAC 1 cut(s) 339
ZraI GACGTC 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.