Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002685

Physical Location & Seq

Genomic Coordinates Reverse (-)

2190395 .. 2193146

Gene Structure 2752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1028500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGCGAAGAAAGCTGAGAGTGCATCAAAATCACCAGGCAATGCAGGGTTATATTCAACTTGTTCAAAGTTTTCAAGTGTTCAATTGGACTGAAACGTGGGACCATAATGTGGGGGAAATAGCAACAAACGAAGAATATGATAGCTGCAGTAGTGACCCTGGGATCGTACTGGGACCAGGAGTAAGGACGGTACTCAATTCTACCAGTTCCCGCTTCTTCATCTGCACCGTTGGTGACCACCGCGAGCAAGGCCAAAAGGTCAGCATCACCGTTGGATCACCAACCACCACCTCTTCTCTGTTAGCTCCTCCACCACCATCCTCCCACGCTTCATCTCTCACTACCACTACTCTTCGTACTTTCGTTGGGCTCATCCCCACACTTGTAGCAGTAATTTCCTTCGTCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

137

Amino Acids

14.84

Weight (kDa)

6.96

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02860 FvH4_1g02870 FvH4_1g02870 FvH4_1g02880 FvH4_2g09850
malus_domestica	MD02G1028300.v1.1 MD02G1028500.v1.1 MD02G1028600.v1.1 MD15G1170000.v1.1 MD15G1170100.v1.1
prunus_persica	Prupe.7G246400_v2.0.a1 Prupe.7G246500_v2.0.a1
pyrus_communis	pycom02g02330 pycom15g15170
rosa_chinensis	RchiOBHm_Chr2g0087971 RchiOBHm_Chr2g0087981 RchiOBHm_Chr2g0087991
rosa_laevigata	RLG00000015915 RLG00000015916 RLG00000015917
rosa_multiflora	Rmu_sc0003275.1_g000003 Rmu_sc0003275.1_g000004 Rmu_sc0003275.1_g000007
rosa_roxburghii	Rroxscaffold_2G00153070 Rroxscaffold_2G00153090
rosa_rugosa	Rorug01G0480200 Rorug01G0480200
rosa_samantha	Rh2AG034800 Rh2AG034900 Rh2AG035000 Rh2BG033800 Rh2BG033900 Rh2BG034000 Rh2CG034800 Rh2CG034900 Rh2CG035000 Rh2DG034600
rosa_wichuraiana	Rw2G002720 Rw2G002730 Rw2G002750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	109
AccII	CGCG	1 cut(s)	243
AciI	CCGC	2 cut(s)	211, 241
AclWI	GGATC	2 cut(s)	170, 283
AfaI	GTAC	3 cut(s)	168, 192, 358
AfiI	CCNNNNNNNGG	1 cut(s)	109
AgsI	TTSAA	4 cut(s)	56, 65, 74, 82
AjnI	CCWGG	3 cut(s)	33, 157, 175
AluBI	AGCT	3 cut(s)	13, 144, 305
AluI	AGCT	3 cut(s)	13, 144, 305
AlwI	GGATC	2 cut(s)	170, 283
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	1 cut(s)	144
AspS9I	GGNCC	2 cut(s)	100, 173
AsuHPI	GGTGA	4 cut(s)	23, 245, 259, 270
AvaII	GGWCC	2 cut(s)	100, 173
BanII	GRGCYC	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	1 cut(s)	325
BciT130I	CCWGG	3 cut(s)	35, 159, 177
BfmI	CTRYAG	1 cut(s)	145
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
Bme1390I	CCNGG	3 cut(s)	35, 159, 177
Bme18I	GGWCC	2 cut(s)	100, 173
BmgT120I	GGNCC	2 cut(s)	100, 173
BmiI	GGNNCC	2 cut(s)	101, 174
BmrFI	CCNGG	3 cut(s)	35, 159, 177
BmrI	ACTGGG	1 cut(s)	179
BmsI	GCATC	2 cut(s)	31, 273
BmuI	ACTGGG	1 cut(s)	179
BsaJI	CCNNGG	2 cut(s)	157, 158
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse1I	ACTGG	2 cut(s)	174, 204
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	3 cut(s)	35, 159, 177
BseDI	CCNNGG	2 cut(s)	157, 158
BseGI	GGATG	2 cut(s)	317, 372
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	5
BseNI	ACTGG	2 cut(s)	174, 204
BseRI	GAGGAG	1 cut(s)	297
BseXI	GCAGC	1 cut(s)	131
BsgI	GTGCAG	1 cut(s)	208
Bsh1236I	CGCG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	252
BslFI	GGGAC	2 cut(s)	113, 186
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmFI	GGGAC	2 cut(s)	113, 186
BsnI	GGCC	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	2 cut(s)	162, 275
BspACI	CCGC	2 cut(s)	211, 241
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	1 cut(s)	6
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	101, 174
BspMAI	CTGCAG	1 cut(s)	149
BspPI	GGATC	2 cut(s)	170, 283
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	2 cut(s)	174, 204
BssECI	CCNNGG	2 cut(s)	157, 158
BssMI	GATC	2 cut(s)	162, 275
Bst2UI	CCWGG	3 cut(s)	35, 159, 177
Bst4CI	ACNGT	3 cut(s)	190, 229, 271
Bst6I	CTCTTC	2 cut(s)	298, 357
BstC8I	GCNNGC	1 cut(s)	245
BstDEI	CTNAG	1 cut(s)	14
BstEII	GGTNACC	1 cut(s)	233
BstF5I	GGATG	2 cut(s)	317, 372
BstFNI	CGCG	1 cut(s)	243
BstKTI	GATC	2 cut(s)	165, 278
BstMBI	GATC	2 cut(s)	162, 275
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 19, 249
BstNI	CCWGG	3 cut(s)	35, 159, 177
BstPI	GGTNACC	1 cut(s)	233
BstSCI	CCNGG	3 cut(s)	33, 157, 175
BstSFI	CTRYAG	1 cut(s)	145
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	317, 372
Cac8I	GCNNGC	1 cut(s)	245
Cfr13I	GGNCC	2 cut(s)	100, 173
Csp6I	GTAC	3 cut(s)	167, 191, 357
CviJI	RGCY	5 cut(s)	13, 144, 252, 305, 370
CviKI_1	RGCY	5 cut(s)	13, 144, 252, 305, 370
CviQI	GTAC	3 cut(s)	167, 191, 357
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	2 cut(s)	164, 277
DpnII	GATC	2 cut(s)	162, 275
Eam1104I	CTCTTC	2 cut(s)	298, 357
EarI	CTCTTC	2 cut(s)	298, 357
Eco24I	GRGCYC	1 cut(s)	372
Eco47I	GGWCC	2 cut(s)	100, 173
Eco91I	GGTNACC	1 cut(s)	233
EcoO65I	GGTNACC	1 cut(s)	233
EcoRII	CCWGG	3 cut(s)	33, 157, 175
EcoT38I	GRGCYC	1 cut(s)	372
FaiI	YATR	3 cut(s)	51, 105, 138
FaqI	GGGAC	2 cut(s)	113, 186
FauI	CCCGC	1 cut(s)	218
Fnu4HI	GCNGC	1 cut(s)	145
FokI	GGATG	2 cut(s)	304, 359
FriOI	GRGCYC	1 cut(s)	372
Fsp4HI	GCNGC	1 cut(s)	145
GluI	GCNGC	1 cut(s)	145
HaeIII	GGCC	1 cut(s)	252
HphI	GGTGA	4 cut(s)	23, 245, 259, 270
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	1 cut(s)	409
HpyCH4III	ACNGT	3 cut(s)	190, 229, 271
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	4 cut(s)	22, 43, 147, 225
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 19, 249
HpyF3I	CTNAG	1 cut(s)	14
HpySE526I	ACGT	1 cut(s)	95
Kzo9I	GATC	2 cut(s)	162, 275
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	9 cut(s)	20, 29, 47, 144, 155, 162, 171, 189, 217
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	2 cut(s)	31, 273
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	2 cut(s)	152, 233
MalI	GATC	2 cut(s)	164, 277
MboI	GATC	2 cut(s)	162, 275
MboII	GAAGA	5 cut(s)	18, 143, 208, 285, 344
MfeI	CAATTG	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	3 cut(s)	82, 196, 393
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	3 cut(s)	301, 318, 331
MseI	TTAA	1 cut(s)	409
MspR9I	CCNGG	3 cut(s)	35, 159, 177
MunI	CAATTG	1 cut(s)	82
MvaI	CCWGG	3 cut(s)	35, 159, 177
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	3 cut(s)	10, 19, 249
NdeII	GATC	2 cut(s)	162, 275
NlaIV	GGNNCC	2 cut(s)	101, 174
NmuCI	GTSAC	2 cut(s)	152, 233
PasI	CCCWGGG	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	109
PkrI	GCNGC	1 cut(s)	146
Psp6I	CCWGG	3 cut(s)	33, 157, 175
PspEI	GGTNACC	1 cut(s)	233
PspGI	CCWGG	3 cut(s)	33, 157, 175
PspN4I	GGNNCC	2 cut(s)	101, 174
PspPI	GGNCC	2 cut(s)	100, 173
PstI	CTGCAG	1 cut(s)	149
RsaI	GTAC	3 cut(s)	168, 192, 358
RsaNI	GTAC	3 cut(s)	167, 191, 357
SaqAI	TTAA	1 cut(s)	409
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	2 cut(s)	162, 275
Sau96I	GGNCC	2 cut(s)	100, 173
ScrFI	CCNGG	3 cut(s)	35, 159, 177
SduI	GDGCHC	1 cut(s)	372
SetI	ASST	6 cut(s)	15, 98, 146, 261, 293, 307
SfaNI	GCATC	2 cut(s)	31, 273
SfcI	CTRYAG	1 cut(s)	145
SinI	GGWCC	2 cut(s)	100, 173
Sse9I	AATT	3 cut(s)	82, 196, 393
SsiI	CCGC	2 cut(s)	211, 241
StyD4I	CCNGG	3 cut(s)	33, 157, 175
TaaI	ACNGT	3 cut(s)	190, 229, 271
TaiI	ACGT	1 cut(s)	98
TasI	AATT	3 cut(s)	82, 196, 393
Tru1I	TTAA	1 cut(s)	409
Tru9I	TTAA	1 cut(s)	409
TseFI	GTSAC	2 cut(s)	152, 233
TseI	GCWGC	1 cut(s)	144
Tsp45I	GTSAC	2 cut(s)	152, 233
TspDTI	ATGAA	2 cut(s)	208, 321
Van91I	CCANNNNNTGG	1 cut(s)	109
VpaK11BI	GGWCC	2 cut(s)	100, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.