Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003275.1

Orthogroup ID

OG0002685

Physical Location & Seq

Genomic Coordinates Reverse (-)

27848 .. 28497

Gene Structure 650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003275.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atggttagttctcaactagggttaattgggtgctcgcttcttgttgcagcactggccttactgaagggtgccaccgctgagagctacaccgtcggagaagatttaggctggaacattcctccttctggttcagttgcctacgcgacctgggcctcctcgaagcgatttcagctcggtgacgtagtcgtgtttaagtggactggaccgcacacggtggctgaagtgacacaggctgatttttcgagctgcacaaagtcgaaccccattgctctctatgattccagcccggcaagaattacgttgagctcgcttaacggtactcggtacttcatctgcaccgaggacaatcactgcagcgttttaggacagaaggtggccattacaatgggaggaacaggtcaatatacaccgggagatgataacaatgatgatgacgacgactggtggagatggaacagtgcttcttctctcaccattggtactgccttgtctgcagtcatatccactgctgtcatatttttcttgaactatatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

178

Amino Acids

18.99

Weight (kDa)

4.51

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02860 FvH4_1g02870 FvH4_1g02870 FvH4_1g02880 FvH4_2g09850
malus_domestica	MD02G1028300.v1.1 MD02G1028500.v1.1 MD02G1028600.v1.1 MD15G1170000.v1.1 MD15G1170100.v1.1
prunus_persica	Prupe.7G246400_v2.0.a1 Prupe.7G246500_v2.0.a1
pyrus_communis	pycom02g02330 pycom15g15170
rosa_chinensis	RchiOBHm_Chr2g0087971 RchiOBHm_Chr2g0087981 RchiOBHm_Chr2g0087991
rosa_laevigata	RLG00000015915 RLG00000015916 RLG00000015917
rosa_multiflora	Rmu_sc0003275.1_g000003 Rmu_sc0003275.1_g000004 Rmu_sc0003275.1_g000007
rosa_roxburghii	Rroxscaffold_2G00153070 Rroxscaffold_2G00153090
rosa_rugosa	Rorug01G0480200 Rorug01G0480200
rosa_samantha	Rh2AG034800 Rh2AG034900 Rh2AG035000 Rh2BG033800 Rh2BG033900 Rh2BG034000 Rh2CG034800 Rh2CG034900 Rh2CG035000 Rh2DG034600
rosa_wichuraiana	Rw2G002720 Rw2G002730 Rw2G002750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	68
AccII	CGCG	1 cut(s)	143
AciI	CCGC	2 cut(s)	75, 206
AcoI	YGGCCR	1 cut(s)	375
AcuI	CTGAAG	2 cut(s)	83, 240
AdeI	CACNNNGTG	1 cut(s)	214
AfaI	GTAC	3 cut(s)	319, 326, 481
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	526
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	4 cut(s)	84, 172, 246, 306
AluI	AGCT	4 cut(s)	84, 172, 246, 306
Alw21I	GWGCWC	2 cut(s)	35, 308
AoxI	GGCC	3 cut(s)	54, 150, 375
ApeKI	GCWGC	3 cut(s)	47, 246, 354
AspS9I	GGNCC	2 cut(s)	150, 203
AsuC2I	CCSGG	2 cut(s)	287, 411
AsuHPI	GGTGA	2 cut(s)	188, 463
AvaII	GGWCC	1 cut(s)	203
BalI	TGGCCA	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	308
Bbv12I	GWGCWC	2 cut(s)	35, 308
BbvI	GCAGC	3 cut(s)	59, 233, 366
BccI	CCATC	1 cut(s)	444
BciT130I	CCWGG	1 cut(s)	148
BcnI	CCSGG	2 cut(s)	287, 411
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	2 cut(s)	352, 492
BisI	GCNGC	3 cut(s)	48, 247, 355
BlsI	GCNGC	3 cut(s)	49, 248, 356
Bme1390I	CCNGG	3 cut(s)	148, 287, 411
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	2 cut(s)	150, 203
BmiI	GGNNCC	1 cut(s)	70
BmrFI	CCNGG	3 cut(s)	148, 287, 411
BpuMI	CCSGG	2 cut(s)	287, 411
BsaJI	CCNNGG	2 cut(s)	147, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse1I	ACTGG	3 cut(s)	57, 205, 446
Bse3DI	GCAATG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	147, 339
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	3 cut(s)	57, 205, 446
BseRI	GAGGAG	1 cut(s)	145
BseXI	GCAGC	3 cut(s)	59, 233, 366
BsgI	GTGCAG	2 cut(s)	232, 319
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	3 cut(s)	56, 152, 377
BshNI	GGYRCC	1 cut(s)	68
BsiHKAI	GWGCWC	2 cut(s)	35, 308
BsiSI	CCGG	2 cut(s)	287, 410
BslI	CCNNNNNNNGG	1 cut(s)	125
BsnI	GGCC	3 cut(s)	56, 152, 377
Bsp1286I	GDGCHC	2 cut(s)	35, 308
BspACI	CCGC	2 cut(s)	75, 206
BspANI	GGCC	3 cut(s)	56, 152, 377
BspCNI	CTCAG	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	70
BspMAI	CTGCAG	2 cut(s)	356, 496
BspT107I	GGYRCC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	3 cut(s)	57, 205, 446
BssECI	CCNNGG	2 cut(s)	147, 339
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	4 cut(s)	91, 214, 317, 458
BstC8I	GCNNGC	2 cut(s)	35, 308
BstDEI	CTNAG	1 cut(s)	78
BstFNI	CGCG	1 cut(s)	143
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 149, 169, 491
BstNI	CCWGG	1 cut(s)	148
BstSCI	CCNGG	3 cut(s)	146, 285, 409
BstSFI	CTRYAG	2 cut(s)	352, 492
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	3 cut(s)	59, 233, 366
BstXI	CCANNNNNNTGG	1 cut(s)	385
BsuRI	GGCC	3 cut(s)	56, 152, 377
BtsI	GCAGTG	2 cut(s)	349, 504
BtsIMutI	CAGTG	4 cut(s)	50, 349, 463, 504
Cac8I	GCNNGC	2 cut(s)	35, 308
Cfr13I	GGNCC	2 cut(s)	150, 203
Csp6I	GTAC	3 cut(s)	318, 325, 480
CviQI	GTAC	3 cut(s)	318, 325, 480
DdeI	CTNAG	1 cut(s)	78
DraIII	CACNNNGTG	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	375
Ecl136II	GAGCTC	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	203
Eco53kI	GAGCTC	1 cut(s)	306
Eco57I	CTGAAG	2 cut(s)	83, 240
EcoICRI	GAGCTC	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	146
EcoT38I	GRGCYC	1 cut(s)	308
FaiI	YATR	5 cut(s)	276, 405, 500, 515, 531
Fnu4HI	GCNGC	3 cut(s)	48, 247, 355
FriOI	GRGCYC	1 cut(s)	308
Fsp4HI	GCNGC	3 cut(s)	48, 247, 355
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	3 cut(s)	48, 247, 355
HaeIII	GGCC	3 cut(s)	56, 152, 377
HapII	CCGG	2 cut(s)	287, 410
HinfI	GANTC	1 cut(s)	278
HpaII	CCGG	2 cut(s)	287, 410
HphI	GGTGA	2 cut(s)	188, 463
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	1 cut(s)	523
Hpy8I	GTNNAC	1 cut(s)	198
Hpy99I	CGWCG	2 cut(s)	95, 440
HpyAV	CCTTC	3 cut(s)	58, 132, 364
HpyCH4III	ACNGT	4 cut(s)	91, 214, 317, 458
HpyCH4IV	ACGT	2 cut(s)	180, 299
HpyCH4V	TGCA	5 cut(s)	47, 249, 336, 354, 494
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 149, 169, 491
HpyF3I	CTNAG	1 cut(s)	78
HpySE526I	ACGT	2 cut(s)	180, 299
Lsp1109I	GCAGC	3 cut(s)	59, 233, 366
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	2 cut(s)	180, 299
MaeIII	GTNAC	2 cut(s)	176, 223
MboII	GAAGA	2 cut(s)	110, 456
MhlI	GDGCHC	2 cut(s)	35, 308
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	2 cut(s)	24, 294
MluNI	TGGCCA	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	5 cut(s)	129, 163, 166, 334, 383
Mox20I	TGGCCA	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	4 cut(s)	23, 192, 312, 535
MslI	CAYNNNNRTG	1 cut(s)	383
Msp20I	TGGCCA	1 cut(s)	377
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	2 cut(s)	287, 410
MspR9I	CCNGG	3 cut(s)	148, 287, 411
MvaI	CCWGG	1 cut(s)	148
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	4 cut(s)	53, 149, 169, 491
NciI	CCSGG	2 cut(s)	287, 411
NlaIV	GGNNCC	1 cut(s)	70
NmuCI	GTSAC	2 cut(s)	176, 223
PfeI	GAWTC	1 cut(s)	278
PflFI	GACNNNGTC	1 cut(s)	182
PkrI	GCNGC	3 cut(s)	49, 248, 356
Psp124BI	GAGCTC	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	70
PspPI	GGNCC	2 cut(s)	150, 203
PstI	CTGCAG	2 cut(s)	356, 496
PsyI	GACNNNGTC	1 cut(s)	182
RsaI	GTAC	3 cut(s)	319, 326, 481
RsaNI	GTAC	3 cut(s)	318, 325, 480
RseI	CAYNNNNRTG	1 cut(s)	383
SacI	GAGCTC	1 cut(s)	308
SaqAI	TTAA	4 cut(s)	23, 192, 312, 535
SatI	GCNGC	3 cut(s)	48, 247, 355
Sau96I	GGNCC	2 cut(s)	150, 203
ScrFI	CCNGG	3 cut(s)	148, 287, 411
SduI	GDGCHC	2 cut(s)	35, 308
SetI	ASST	9 cut(s)	86, 149, 174, 183, 248, 302, 308, 375, 400
SfcI	CTRYAG	2 cut(s)	352, 492
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	383
Sse9I	AATT	2 cut(s)	24, 294
SsiI	CCGC	2 cut(s)	75, 206
SspMI	CTAG	1 cut(s)	17
SstI	GAGCTC	1 cut(s)	308
StyD4I	CCNGG	3 cut(s)	146, 285, 409
TaaI	ACNGT	4 cut(s)	91, 214, 317, 458
TaiI	ACGT	2 cut(s)	183, 302
TaqI	TCGA	3 cut(s)	158, 242, 257
TasI	AATT	2 cut(s)	24, 294
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	4 cut(s)	23, 192, 312, 535
Tru9I	TTAA	4 cut(s)	23, 192, 312, 535
TscAI	CASTG	4 cut(s)	57, 356, 463, 511
TseFI	GTSAC	2 cut(s)	176, 223
TseI	GCWGC	3 cut(s)	47, 246, 354
Tsp45I	GTSAC	2 cut(s)	176, 223
TspDTI	ATGAA	1 cut(s)	319
TspRI	CASTG	4 cut(s)	57, 356, 463, 511
Tth111I	GACNNNGTC	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	203
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.