FvH4_1g02880

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002685
Physical Location & Seq
Reverse (-)
1639554 .. 1640675
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02880.t1

Sequence Viewer

Length: 525 bp
ATGGTTAGTTCTCAACTAGGGTTGATTGGCTGCTCGCTTCTCGTTGTAGCAGTGGCCTTACTAAAGGGTGTCACTGCTGATAGCTACACCGTCGGAGAAGATTTAGGTTGGAATATTCCTCCGGCCGGTTCAGTTGCCTACTCCACCTGGGCCGCCTCGAAGCAATTTCAGCTCGGTGACGTAGTTGTGTTTAAGTGGACTGGACCGCACACGGTGGCTGAAGTGACAGCGGCTGATTTTTCGAGCTGCACAAAGTCGAATCCGATTGCTCTCTATGATTCCAGCCCGGCAAGAATTACGTTGAGCTCGCTAAACGGTACTCGGTACTTCATCTGCACTGAGGACAACCACTGCAGCGTTTTAGGGCAGAAGGTGGCCATTACAATGGGAGGAACAGGTCAATCTGATAACAGTGATGACGATGATGACTGGTGGAGATGGAACAGTGCTTCTTCTCTCACCATTGGCACTGCCTTGTCTGCAGTCATCTCTACCGTAGTCATATTTTTCTTGAACTATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

175

Amino Acids

18.47

Weight (kDa)

4.45

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 42 - 119 7.8e-20 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 153, 206, 230
AcoI YGGCCR 2 cut(s) 123, 375
AcuI CTGAAG 1 cut(s) 240
AdeI CACNNNGTG 1 cut(s) 214
AfaI GTAC 2 cut(s) 319, 326
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 1 cut(s) 514
AjnI CCWGG 1 cut(s) 146
AluBI AGCT 4 cut(s) 84, 172, 246, 306
AluI AGCT 4 cut(s) 84, 172, 246, 306
Alw21I GWGCWC 1 cut(s) 308
AlwNI CAGNNNCTG 1 cut(s) 233
AoxI GGCC 4 cut(s) 54, 123, 150, 375
ApeKI GCWGC 3 cut(s) 30, 246, 354
AspS9I GGNCC 2 cut(s) 150, 203
AsuC2I CCSGG 1 cut(s) 287
AsuHPI GGTGA 2 cut(s) 188, 451
AvaII GGWCC 1 cut(s) 203
BalI TGGCCA 1 cut(s) 377
BanII GRGCYC 1 cut(s) 308
Bbv12I GWGCWC 1 cut(s) 308
BbvI GCAGC 3 cut(s) 17, 233, 366
BccI CCATC 1 cut(s) 432
BciT130I CCWGG 1 cut(s) 148
BcnI CCSGG 1 cut(s) 287
BfaI CTAG 1 cut(s) 17
BfmI CTRYAG 2 cut(s) 352, 480
BisI GCNGC 5 cut(s) 31, 153, 231, 247, 355
BlsI GCNGC 5 cut(s) 32, 154, 232, 248, 356
Bme1390I CCNGG 2 cut(s) 148, 287
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 2 cut(s) 150, 203
BmrFI CCNGG 2 cut(s) 148, 287
BpuMI CCSGG 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 147
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 2 cut(s) 205, 434
BseBI CCWGG 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 2 cut(s) 205, 434
BseX3I CGGCCG 1 cut(s) 123
BseXI GCAGC 3 cut(s) 17, 233, 366
BsgI GTGCAG 2 cut(s) 232, 319
Bsh1285I CGRYCG 1 cut(s) 126
BshFI GGCC 4 cut(s) 56, 125, 152, 377
BsiEI CGRYCG 1 cut(s) 126
BsiHKAI GWGCWC 1 cut(s) 308
BsiSI CCGG 3 cut(s) 122, 126, 287
BslI CCNNNNNNNGG 1 cut(s) 125
BsnI GGCC 4 cut(s) 56, 125, 152, 377
Bsp1286I GDGCHC 1 cut(s) 308
BspACI CCGC 3 cut(s) 153, 206, 230
BspANI GGCC 4 cut(s) 56, 125, 152, 377
BspCNI CTCAG 1 cut(s) 331
BspMAI CTGCAG 2 cut(s) 356, 484
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 2 cut(s) 205, 434
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 6 cut(s) 91, 214, 317, 413, 446, 496
BstC8I GCNNGC 2 cut(s) 35, 308
BstDEI CTNAG 1 cut(s) 339
BstMCI CGRYCG 1 cut(s) 126
BstMWI GCNNNNNNNGC 2 cut(s) 169, 479
BstNI CCWGG 1 cut(s) 148
BstSCI CCNGG 2 cut(s) 146, 285
BstSFI CTRYAG 2 cut(s) 352, 480
BstV1I GCAGC 3 cut(s) 17, 233, 366
BstXI CCANNNNNNTGG 1 cut(s) 385
BstZI CGGCCG 1 cut(s) 123
BsuRI GGCC 4 cut(s) 56, 125, 152, 377
BtsI GCAGTG 4 cut(s) 57, 72, 349, 468
BtsIMutI CAGTG 7 cut(s) 57, 72, 336, 349, 418, 451, 468
Cac8I GCNNGC 2 cut(s) 35, 308
CaiI CAGNNNCTG 1 cut(s) 233
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 2 cut(s) 150, 203
Csp6I GTAC 2 cut(s) 318, 325
CviQI GTAC 2 cut(s) 318, 325
DdeI CTNAG 1 cut(s) 339
DraIII CACNNNGTG 1 cut(s) 214
EaeI YGGCCR 2 cut(s) 123, 375
EagI CGGCCG 1 cut(s) 123
Ecl136II GAGCTC 1 cut(s) 306
EclXI CGGCCG 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 203
Eco52I CGGCCG 1 cut(s) 123
Eco53kI GAGCTC 1 cut(s) 306
Eco57I CTGAAG 1 cut(s) 240
EcoICRI GAGCTC 1 cut(s) 306
EcoRII CCWGG 1 cut(s) 146
EcoT38I GRGCYC 1 cut(s) 308
FaiI YATR 3 cut(s) 276, 503, 519
Fnu4HI GCNGC 5 cut(s) 31, 153, 231, 247, 355
FriOI GRGCYC 1 cut(s) 308
Fsp4HI GCNGC 5 cut(s) 31, 153, 231, 247, 355
FspBI CTAG 1 cut(s) 17
GluI GCNGC 5 cut(s) 31, 153, 231, 247, 355
HaeIII GGCC 4 cut(s) 56, 125, 152, 377
HapII CCGG 3 cut(s) 122, 126, 287
HinfI GANTC 2 cut(s) 259, 278
HpaII CCGG 3 cut(s) 122, 126, 287
HphI GGTGA 2 cut(s) 188, 451
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 3 cut(s) 95, 264, 406
Hpy188III TCNNGA 1 cut(s) 511
Hpy8I GTNNAC 1 cut(s) 198
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 364
HpyCH4III ACNGT 6 cut(s) 91, 214, 317, 413, 446, 496
HpyCH4IV ACGT 2 cut(s) 180, 299
HpyCH4V TGCA 4 cut(s) 249, 336, 354, 482
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 479
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 2 cut(s) 180, 299
LpnPI CCDG 9 cut(s) 133, 135, 139, 160, 186, 295, 300, 381, 415
Lsp1109I GCAGC 3 cut(s) 17, 233, 366
MaeI CTAG 1 cut(s) 17
MaeII ACGT 2 cut(s) 180, 299
MaeIII GTNAC 3 cut(s) 70, 176, 223
MboII GAAGA 2 cut(s) 110, 444
MhlI GDGCHC 1 cut(s) 308
MlsI TGGCCA 1 cut(s) 377
MluCI AATT 2 cut(s) 164, 294
MluNI TGGCCA 1 cut(s) 377
MmeI TCCRAC 2 cut(s) 73, 89
MnlI CCTC 4 cut(s) 129, 166, 334, 383
Mox20I TGGCCA 1 cut(s) 377
MscI TGGCCA 1 cut(s) 377
MseI TTAA 2 cut(s) 192, 523
MslI CAYNNNNRTG 1 cut(s) 383
Msp20I TGGCCA 1 cut(s) 377
MspA1I CMGCKG 1 cut(s) 230
MspI CCGG 3 cut(s) 122, 126, 287
MspR9I CCNGG 2 cut(s) 148, 287
MvaI CCWGG 1 cut(s) 148
MwoI GCNNNNNNNGC 2 cut(s) 169, 479
NciI CCSGG 1 cut(s) 287
NmuCI GTSAC 3 cut(s) 70, 176, 223
PfeI GAWTC 2 cut(s) 259, 278
PkrI GCNGC 5 cut(s) 32, 154, 232, 248, 356
Psp124BI GAGCTC 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 146
PspPI GGNCC 2 cut(s) 150, 203
PstI CTGCAG 2 cut(s) 356, 484
PstNI CAGNNNCTG 1 cut(s) 233
RsaI GTAC 2 cut(s) 319, 326
RsaNI GTAC 2 cut(s) 318, 325
RseI CAYNNNNRTG 1 cut(s) 383
SacI GAGCTC 1 cut(s) 308
SaqAI TTAA 2 cut(s) 192, 523
SatI GCNGC 5 cut(s) 31, 153, 231, 247, 355
Sau96I GGNCC 2 cut(s) 150, 203
ScrFI CCNGG 2 cut(s) 148, 287
SduI GDGCHC 1 cut(s) 308
SfcI CTRYAG 2 cut(s) 352, 480
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 383
Sse9I AATT 2 cut(s) 164, 294
SsiI CCGC 3 cut(s) 153, 206, 230
SspI AATATT 1 cut(s) 115
SspMI CTAG 1 cut(s) 17
SstI GAGCTC 1 cut(s) 308
StyD4I CCNGG 2 cut(s) 146, 285
TaaI ACNGT 6 cut(s) 91, 214, 317, 413, 446, 496
TaiI ACGT 2 cut(s) 183, 302
TaqI TCGA 3 cut(s) 158, 242, 257
TasI AATT 2 cut(s) 164, 294
TauI GCSGC 2 cut(s) 155, 233
TfiI GAWTC 2 cut(s) 259, 278
Tru1I TTAA 2 cut(s) 192, 523
Tru9I TTAA 2 cut(s) 192, 523
TscAI CASTG 7 cut(s) 57, 79, 343, 356, 418, 451, 475
TseFI GTSAC 3 cut(s) 70, 176, 223
TseI GCWGC 3 cut(s) 30, 246, 354
Tsp45I GTSAC 3 cut(s) 70, 176, 223
TspDTI ATGAA 1 cut(s) 319
TspRI CASTG 7 cut(s) 57, 79, 343, 356, 418, 451, 475
VpaK11BI GGWCC 1 cut(s) 203
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.