Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003275.1

Orthogroup ID

OG0002685

Physical Location & Seq

Genomic Coordinates Reverse (-)

10315 .. 10845

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003275.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atgaagggtgcaacagcggcagaatatgtagttggtgacagcttgggctggactcttccccccaacacctccttctattcagattgggctgcctctaagacatttcagttgggcgatgtagtttcattcaattggactggaaatcatactatggcagaagcaactaaggaagaatatgacaactgcagtgacccgggaatctggattactactccggtgaatgtgaatcttatttctgctggttctcgctacttcatctgcaccgttggcgaccactgtgagcaaggccagaaggtgaccatcactgtaggatcatcctctccaacatctgctccaccaccgccttcaggcgcccatactactgttgcatctttactacttgggctcatcagctccacactagtcatttctttcttcacttgcatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

142

Amino Acids

15.03

Weight (kDa)

4.66

Isoelectric Point (pI)

32.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02860 FvH4_1g02870 FvH4_1g02870 FvH4_1g02880 FvH4_2g09850
malus_domestica	MD02G1028300.v1.1 MD02G1028500.v1.1 MD02G1028600.v1.1 MD15G1170000.v1.1 MD15G1170100.v1.1
prunus_persica	Prupe.7G246400_v2.0.a1 Prupe.7G246500_v2.0.a1
pyrus_communis	pycom02g02330 pycom15g15170
rosa_chinensis	RchiOBHm_Chr2g0087971 RchiOBHm_Chr2g0087981 RchiOBHm_Chr2g0087991
rosa_laevigata	RLG00000015915 RLG00000015916 RLG00000015917
rosa_multiflora	Rmu_sc0003275.1_g000003 Rmu_sc0003275.1_g000004 Rmu_sc0003275.1_g000007
rosa_roxburghii	Rroxscaffold_2G00153070 Rroxscaffold_2G00153090
rosa_rugosa	Rorug01G0480200 Rorug01G0480200
rosa_samantha	Rh2AG034800 Rh2AG034900 Rh2AG035000 Rh2BG033800 Rh2BG033900 Rh2BG034000 Rh2CG034800 Rh2CG034900 Rh2CG035000 Rh2DG034600
rosa_wichuraiana	Rw2G002720 Rw2G002730 Rw2G002750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	350
AciI	CCGC	2 cut(s)	17, 341
AclWI	GGATC	1 cut(s)	319
AcuI	CTGAAG	1 cut(s)	330
AcyI	GRCGYC	1 cut(s)	351
AfiI	CCNNNNNNNGG	1 cut(s)	347
AgsI	TTSAA	1 cut(s)	130
AhlI	ACTAGT	1 cut(s)	400
AjuI	GAANNNNNNNTTGG	4 cut(s)	15, 47, 56, 88
AluBI	AGCT	2 cut(s)	42, 393
AluI	AGCT	2 cut(s)	42, 393
AlwI	GGATC	1 cut(s)	319
Ama87I	CYCGRG	1 cut(s)	193
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	353
AsuC2I	CCSGG	2 cut(s)	194, 195
AsuHPI	GGTGA	3 cut(s)	47, 229, 307
AvaI	CYCGRG	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	350
BanII	GRGCYC	1 cut(s)	387
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	1 cut(s)	308
BcnI	CCSGG	2 cut(s)	194, 195
BcuI	ACTAGT	1 cut(s)	400
BfaI	CTAG	1 cut(s)	401
BfmI	CTRYAG	2 cut(s)	184, 306
BfoI	RGCGCY	1 cut(s)	354
BisI	GCNGC	2 cut(s)	18, 90
BlsI	GCNGC	2 cut(s)	19, 91
Bme1390I	CCNGG	2 cut(s)	194, 195
BmeT110I	CYCGRG	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	352
BmrFI	CCNGG	2 cut(s)	194, 195
BmsI	GCATC	1 cut(s)	377
BpuMI	CCSGG	2 cut(s)	194, 195
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	193
BsaWI	WCCGGW	1 cut(s)	214
BsaXI	ACNNNNNCTCC	2 cut(s)	316, 346
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse1I	ACTGG	1 cut(s)	142
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	1 cut(s)	314
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseNI	ACTGG	1 cut(s)	142
BseXI	GCAGC	1 cut(s)	76
BsgI	GTGCAG	1 cut(s)	244
BshFI	GGCC	1 cut(s)	288
BshNI	GGYRCC	1 cut(s)	350
BsiHKCI	CYCGRG	1 cut(s)	193
BsiSI	CCGG	2 cut(s)	194, 215
BslI	CCNNNNNNNGG	1 cut(s)	347
BsnI	GGCC	1 cut(s)	288
BsoBI	CYCGRG	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	1 cut(s)	311
BspACI	CCGC	2 cut(s)	17, 341
BspANI	GGCC	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	352
BspMAI	CTGCAG	1 cut(s)	188
BspPI	GGATC	1 cut(s)	319
BspT107I	GGYRCC	1 cut(s)	350
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	1 cut(s)	311
BssNI	GRCGYC	1 cut(s)	351
Bst4CI	ACNGT	4 cut(s)	265, 278, 307, 364
Bst6I	CTCTTC	1 cut(s)	60
BstACI	GRCGYC	1 cut(s)	351
BstDEI	CTNAG	2 cut(s)	96, 165
BstEII	GGTNACC	1 cut(s)	295
BstF5I	GGATG	1 cut(s)	314
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	1 cut(s)	314
BstMBI	GATC	1 cut(s)	311
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 267
BstNSI	RCATGY	1 cut(s)	427
BstPI	GGTNACC	1 cut(s)	295
BstSCI	CCNGG	2 cut(s)	192, 193
BstSFI	CTRYAG	2 cut(s)	184, 306
BstV1I	GCAGC	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	288
BtgZI	GCGATG	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	314
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	3 cut(s)	193, 274, 303
CfoI	GCGC	1 cut(s)	353
Cfr9I	CCCGGG	1 cut(s)	193
CviAII	CATG	1 cut(s)	424
CviJI	RGCY	6 cut(s)	42, 48, 89, 288, 385, 393
CviKI_1	RGCY	6 cut(s)	42, 48, 89, 288, 385, 393
DdeI	CTNAG	2 cut(s)	96, 165
DinI	GGCGCC	1 cut(s)	352
DpnI	GATC	1 cut(s)	313
DpnII	GATC	1 cut(s)	311
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	330
Eco88I	CYCGRG	1 cut(s)	193
Eco91I	GGTNACC	1 cut(s)	295
EcoO65I	GGTNACC	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	387
EgeI	GGCGCC	1 cut(s)	352
EheI	GGCGCC	1 cut(s)	352
FaeI	CATG	1 cut(s)	427
FaiI	YATR	6 cut(s)	27, 147, 152, 177, 357, 425
FatI	CATG	1 cut(s)	423
Fnu4HI	GCNGC	2 cut(s)	18, 90
FokI	GGATG	1 cut(s)	301
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	2 cut(s)	18, 90
FspBI	CTAG	1 cut(s)	401
GlaI	GCGC	1 cut(s)	352
GluI	GCNGC	2 cut(s)	18, 90
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	2 cut(s)	194, 215
HhaI	GCGC	1 cut(s)	353
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	1 cut(s)	427
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HinfI	GANTC	3 cut(s)	52, 198, 226
HpaII	CCGG	2 cut(s)	194, 215
HphI	GGTGA	3 cut(s)	47, 229, 307
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	1 cut(s)	202
HpyAV	CCTTC	3 cut(s)	82, 286, 354
HpyCH4III	ACNGT	4 cut(s)	265, 278, 307, 364
HpyCH4V	TGCA	5 cut(s)	11, 186, 261, 368, 423
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 267
HpyF3I	CTNAG	2 cut(s)	96, 165
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	1 cut(s)	427
HspAI	GCGC	1 cut(s)	351
KasI	GGCGCC	1 cut(s)	350
Kzo9I	GATC	1 cut(s)	311
LmnI	GCTCC	2 cut(s)	337, 398
LpnPI	CCDG	8 cut(s)	34, 123, 187, 207, 225, 228, 302, 333
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	1 cut(s)	377
MaeI	CTAG	1 cut(s)	401
MaeIII	GTNAC	3 cut(s)	35, 188, 295
MalI	GATC	1 cut(s)	313
MboI	GATC	1 cut(s)	311
MboII	GAAGA	3 cut(s)	47, 182, 406
MfeI	CAATTG	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	1 cut(s)	130
Mly113I	GGCGCC	1 cut(s)	351
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	1 cut(s)	347
MnlI	CCTC	3 cut(s)	79, 103, 328
MslI	CAYNNNNRTG	1 cut(s)	422
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	2 cut(s)	194, 215
MspR9I	CCNGG	2 cut(s)	194, 195
MunI	CAATTG	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	17, 267
NarI	GGCGCC	1 cut(s)	351
NciI	CCSGG	2 cut(s)	194, 195
NdeII	GATC	1 cut(s)	311
NlaIII	CATG	1 cut(s)	427
NlaIV	GGNNCC	1 cut(s)	352
NmuCI	GTSAC	3 cut(s)	35, 188, 295
NspI	RCATGY	1 cut(s)	427
PfeI	GAWTC	2 cut(s)	198, 226
PkrI	GCNGC	2 cut(s)	19, 91
PleI	GAGTC	1 cut(s)	46
PluTI	GGCGCC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	46
PspEI	GGTNACC	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	352
PstI	CTGCAG	1 cut(s)	188
RseI	CAYNNNNRTG	1 cut(s)	422
SatI	GCNGC	2 cut(s)	18, 90
Sau3AI	GATC	1 cut(s)	311
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	194, 195
SduI	GDGCHC	1 cut(s)	387
SetI	ASST	4 cut(s)	44, 71, 297, 395
SfaNI	GCATC	1 cut(s)	377
SfcI	CTRYAG	2 cut(s)	184, 306
SfoI	GGCGCC	1 cut(s)	352
SmaI	CCCGGG	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	422
SpeI	ACTAGT	1 cut(s)	400
Sse9I	AATT	1 cut(s)	130
SsiI	CCGC	2 cut(s)	17, 341
SspDI	GGCGCC	1 cut(s)	350
SspMI	CTAG	1 cut(s)	401
StyD4I	CCNGG	2 cut(s)	192, 193
TaaI	ACNGT	4 cut(s)	265, 278, 307, 364
TasI	AATT	1 cut(s)	130
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	2 cut(s)	198, 226
TscAI	CASTG	3 cut(s)	193, 281, 310
TseFI	GTSAC	3 cut(s)	35, 188, 295
TseI	GCWGC	1 cut(s)	89
Tsp45I	GTSAC	3 cut(s)	35, 188, 295
TspDTI	ATGAA	3 cut(s)	17, 114, 244
TspMI	CCCGGG	1 cut(s)	193
TspRI	CASTG	3 cut(s)	193, 281, 310
XceI	RCATGY	1 cut(s)	427
XmaI	CCCGGG	1 cut(s)	193
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.