Rh2AG035000

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002685
Physical Location & Seq
Reverse (-)
2592090 .. 2592987
898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG035000.1

Sequence Viewer

Length: 591 bp
ATGCAATATATAACATTTCCAAAGCAAGAAAACACAGAGATATTCATATCAAACATGGTTAGTTCTCAACTAGGGTTAATTGGGTGCTCGCTTCTTGTTGTAGCACTGGCCTTACTGAAGGGTGCCACCGCTGAGAGCTACACCGTCGGAGAAGATTTAGGCTGGAACATTCCTCCTTCTGGTTCAGTTGCCTACGCGACCTGGGCCGCCTCGAAGCGATTTCAGCTCGGTGACGTAGTCGTGTTTAAGTGGACTGGACCGCACACGGTGGCTGAAGTGACACAGGCTGATTTTTCGAGCTGCACAAAGTCGAACCCCATTGCTCTCTATGATTCCAGCCCGGCAAGAATTACGTTGAGCTCGCTTAACGGTACTCGGTACTTCATCTGCACCGAGGACAATCACTGCAGCGTTTTAGGACAGAAGGTGGCCATTACAATGGGAGGAACAGGTCAATATACACCGGGAGATGATAACAATGATGATGACGACGACTGGTGGAGATGGAACAGTGCTTCTTCTCTCACCATTGGTACTGCCTTGTCTGCAGTCATATCCACTGCTGTCATATTTTTCTTGAACTATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

196

Amino Acids

21.18

Weight (kDa)

4.5

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 55 - 137 6.5e-20 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AccII CGCG 1 cut(s) 197
AciI CCGC 3 cut(s) 129, 207, 260
AcoI YGGCCR 1 cut(s) 429
AcuI CTGAAG 2 cut(s) 137, 294
AdeI CACNNNGTG 1 cut(s) 268
AfaI GTAC 3 cut(s) 373, 380, 535
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 1 cut(s) 580
AjnI CCWGG 1 cut(s) 200
AluBI AGCT 4 cut(s) 138, 226, 300, 360
AluI AGCT 4 cut(s) 138, 226, 300, 360
Alw21I GWGCWC 2 cut(s) 89, 362
AoxI GGCC 3 cut(s) 108, 204, 429
ApeKI GCWGC 2 cut(s) 300, 408
AspS9I GGNCC 2 cut(s) 204, 257
AsuC2I CCSGG 2 cut(s) 341, 465
AsuHPI GGTGA 2 cut(s) 242, 517
AvaII GGWCC 1 cut(s) 257
BalI TGGCCA 1 cut(s) 431
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 362
Bbv12I GWGCWC 2 cut(s) 89, 362
BbvI GCAGC 2 cut(s) 287, 420
BccI CCATC 1 cut(s) 498
BciT130I CCWGG 1 cut(s) 202
BcnI CCSGG 2 cut(s) 341, 465
BfaI CTAG 1 cut(s) 71
BfmI CTRYAG 2 cut(s) 406, 546
BisI GCNGC 3 cut(s) 207, 301, 409
BlsI GCNGC 3 cut(s) 208, 302, 410
Bme1390I CCNGG 3 cut(s) 202, 341, 465
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 204, 257
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 3 cut(s) 202, 341, 465
BpuMI CCSGG 2 cut(s) 341, 465
BsaJI CCNNGG 2 cut(s) 201, 393
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse1I ACTGG 3 cut(s) 111, 259, 500
Bse3DI GCAATG 1 cut(s) 318
BseBI CCWGG 1 cut(s) 202
BseDI CCNNGG 2 cut(s) 201, 393
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 3 cut(s) 111, 259, 500
BseXI GCAGC 2 cut(s) 287, 420
BsgI GTGCAG 2 cut(s) 286, 373
Bsh1236I CGCG 1 cut(s) 197
BshFI GGCC 3 cut(s) 110, 206, 431
BshNI GGYRCC 1 cut(s) 122
BsiHKAI GWGCWC 2 cut(s) 89, 362
BsiSI CCGG 2 cut(s) 341, 464
BslI CCNNNNNNNGG 1 cut(s) 179
BsnI GGCC 3 cut(s) 110, 206, 431
Bsp1286I GDGCHC 2 cut(s) 89, 362
BspACI CCGC 3 cut(s) 129, 207, 260
BspANI GGCC 3 cut(s) 110, 206, 431
BspCNI CTCAG 1 cut(s) 124
BspFNI CGCG 1 cut(s) 197
BspLI GGNNCC 1 cut(s) 124
BspMAI CTGCAG 2 cut(s) 410, 550
BspT107I GGYRCC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 318
BsrI ACTGG 3 cut(s) 111, 259, 500
BssECI CCNNGG 2 cut(s) 201, 393
Bst2UI CCWGG 1 cut(s) 202
Bst4CI ACNGT 4 cut(s) 145, 268, 371, 512
BstC8I GCNNGC 2 cut(s) 89, 362
BstDEI CTNAG 1 cut(s) 132
BstFNI CGCG 1 cut(s) 197
BstMWI GCNNNNNNNGC 3 cut(s) 203, 223, 545
BstNI CCWGG 1 cut(s) 202
BstSCI CCNGG 3 cut(s) 200, 339, 463
BstSFI CTRYAG 2 cut(s) 406, 546
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 2 cut(s) 287, 420
BstXI CCANNNNNNTGG 1 cut(s) 439
BsuRI GGCC 3 cut(s) 110, 206, 431
BtsI GCAGTG 2 cut(s) 403, 558
BtsIMutI CAGTG 4 cut(s) 104, 403, 517, 558
Cac8I GCNNGC 2 cut(s) 89, 362
Cfr13I GGNCC 2 cut(s) 204, 257
Csp6I GTAC 3 cut(s) 372, 379, 534
CviAII CATG 1 cut(s) 55
CviQI GTAC 3 cut(s) 372, 379, 534
DdeI CTNAG 1 cut(s) 132
DraIII CACNNNGTG 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 429
Ecl136II GAGCTC 1 cut(s) 360
Eco24I GRGCYC 1 cut(s) 362
Eco47I GGWCC 1 cut(s) 257
Eco53kI GAGCTC 1 cut(s) 360
Eco57I CTGAAG 2 cut(s) 137, 294
EcoICRI GAGCTC 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 200
EcoT38I GRGCYC 1 cut(s) 362
FaeI CATG 1 cut(s) 58
FaiI YATR 9 cut(s) 9, 11, 47, 56, 330, 459, 554, 569, 585
FatI CATG 1 cut(s) 54
Fnu4HI GCNGC 3 cut(s) 207, 301, 409
FriOI GRGCYC 1 cut(s) 362
Fsp4HI GCNGC 3 cut(s) 207, 301, 409
FspBI CTAG 1 cut(s) 71
GluI GCNGC 3 cut(s) 207, 301, 409
HaeIII GGCC 3 cut(s) 110, 206, 431
HapII CCGG 2 cut(s) 341, 464
Hin1II CATG 1 cut(s) 58
HinfI GANTC 1 cut(s) 332
HpaII CCGG 2 cut(s) 341, 464
HphI GGTGA 2 cut(s) 242, 517
Hpy166II GTNNAC 1 cut(s) 252
Hpy188I TCNGA 1 cut(s) 149
Hpy188III TCNNGA 1 cut(s) 577
Hpy8I GTNNAC 1 cut(s) 252
Hpy99I CGWCG 2 cut(s) 149, 494
HpyAV CCTTC 3 cut(s) 112, 186, 418
HpyCH4III ACNGT 4 cut(s) 145, 268, 371, 512
HpyCH4IV ACGT 2 cut(s) 234, 353
HpyCH4V TGCA 5 cut(s) 4, 303, 390, 408, 548
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 223, 545
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 2 cut(s) 234, 353
Hsp92II CATG 1 cut(s) 58
Lsp1109I GCAGC 2 cut(s) 287, 420
MaeI CTAG 1 cut(s) 71
MaeII ACGT 2 cut(s) 234, 353
MaeIII GTNAC 2 cut(s) 230, 277
MboII GAAGA 2 cut(s) 164, 510
MhlI GDGCHC 2 cut(s) 89, 362
MlsI TGGCCA 1 cut(s) 431
MluCI AATT 2 cut(s) 78, 348
MluNI TGGCCA 1 cut(s) 431
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 4 cut(s) 183, 220, 388, 437
Mox20I TGGCCA 1 cut(s) 431
MscI TGGCCA 1 cut(s) 431
MseI TTAA 4 cut(s) 77, 246, 366, 589
MslI CAYNNNNRTG 1 cut(s) 437
Msp20I TGGCCA 1 cut(s) 431
MspA1I CMGCKG 1 cut(s) 131
MspI CCGG 2 cut(s) 341, 464
MspR9I CCNGG 3 cut(s) 202, 341, 465
MvaI CCWGG 1 cut(s) 202
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 3 cut(s) 203, 223, 545
NciI CCSGG 2 cut(s) 341, 465
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 1 cut(s) 124
NmuCI GTSAC 2 cut(s) 230, 277
PfeI GAWTC 1 cut(s) 332
PflFI GACNNNGTC 1 cut(s) 236
PkrI GCNGC 3 cut(s) 208, 302, 410
Psp124BI GAGCTC 1 cut(s) 362
Psp6I CCWGG 1 cut(s) 200
PspGI CCWGG 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 2 cut(s) 204, 257
PstI CTGCAG 2 cut(s) 410, 550
PsyI GACNNNGTC 1 cut(s) 236
RsaI GTAC 3 cut(s) 373, 380, 535
RsaNI GTAC 3 cut(s) 372, 379, 534
RseI CAYNNNNRTG 1 cut(s) 437
SacI GAGCTC 1 cut(s) 362
SaqAI TTAA 4 cut(s) 77, 246, 366, 589
SatI GCNGC 3 cut(s) 207, 301, 409
Sau96I GGNCC 2 cut(s) 204, 257
ScrFI CCNGG 3 cut(s) 202, 341, 465
SduI GDGCHC 2 cut(s) 89, 362
SetI ASST 9 cut(s) 140, 203, 228, 237, 302, 356, 362, 429, 454
SfcI CTRYAG 2 cut(s) 406, 546
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 437
Sse9I AATT 2 cut(s) 78, 348
SsiI CCGC 3 cut(s) 129, 207, 260
SspMI CTAG 1 cut(s) 71
SstI GAGCTC 1 cut(s) 362
StyD4I CCNGG 3 cut(s) 200, 339, 463
TaaI ACNGT 4 cut(s) 145, 268, 371, 512
TaiI ACGT 2 cut(s) 237, 356
TaqI TCGA 3 cut(s) 212, 296, 311
TasI AATT 2 cut(s) 78, 348
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 1 cut(s) 332
Tru1I TTAA 4 cut(s) 77, 246, 366, 589
Tru9I TTAA 4 cut(s) 77, 246, 366, 589
TscAI CASTG 4 cut(s) 111, 410, 517, 565
TseFI GTSAC 2 cut(s) 230, 277
TseI GCWGC 2 cut(s) 300, 408
Tsp45I GTSAC 2 cut(s) 230, 277
TspDTI ATGAA 2 cut(s) 34, 373
TspRI CASTG 4 cut(s) 111, 410, 517, 565
Tth111I GACNNNGTC 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 257
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.