Rh2DG034600

Cucumber peeling cupredoxin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002685
Physical Location & Seq
Forward (+)
2256940 .. 2272143
15204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG034600.1

Sequence Viewer

Length: 366 bp
ATGGATAGCCGTGTGGCTTTGATGAGCTTCGTGATGGTGGCTTTGCCAATGAAGGGTGCAGCTGCTGGAATTCACACAGTCAATTGGACTGTCCCCTCCAATAAGTCAGCTTACACCACTTGGGCTAACACGAGCACTCTCTATCTCAACGACCAACTGCAATTCGGGTGGAGTGGGACGCACAATGTGGCGAATGCAACCAAGGATGAATATGATAACTGCTTAAAGACTGCCAAGTTCAAGAAAAATATGACAGCAGTGGATATGACTGCAGACAAGGCAGTACCAATGGTGAGAGAAGAAGCACTGTTCCATCTCCACCAGTCGTCGTCATCATCATTGTTATCATCTCCCGGTGTATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

121

Amino Acids

13.25

Weight (kDa)

7.89

Isoelectric Point (pI)

36.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 29 - 95 1.9e-09 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 69
AdeI CACNNNGTG 1 cut(s) 187
AfaI GTAC 1 cut(s) 285
AfiI CCNNNNNNNGG 1 cut(s) 53
AgsI TTSAA 1 cut(s) 241
AluBI AGCT 3 cut(s) 27, 62, 110
AluI AGCT 3 cut(s) 27, 62, 110
Alw21I GWGCWC 1 cut(s) 137
AlwNI CAGNNNCTG 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 59, 62
ApoI RAATTY 1 cut(s) 69
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 304
BauI CACGAG 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 137
BbvI GCAGC 2 cut(s) 49, 71
BccI CCATC 2 cut(s) 28, 321
BcnI CCSGG 1 cut(s) 354
BfmI CTRYAG 1 cut(s) 270
BisI GCNGC 2 cut(s) 60, 63
BlsI GCNGC 2 cut(s) 61, 64
Bme1390I CCNGG 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 354
BpuMI CCSGG 1 cut(s) 354
BsaJI CCNNGG 1 cut(s) 201
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 322
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 322
BseXI GCAGC 2 cut(s) 49, 71
BsgI GTGCAG 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 137
BsiSI CCGG 1 cut(s) 354
BslFI GGGAC 2 cut(s) 77, 190
BslI CCNNNNNNNGG 1 cut(s) 53
BsmFI GGGAC 2 cut(s) 77, 190
BsmI GAATGC 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 137
BspMAI CTGCAG 1 cut(s) 274
BsrI ACTGG 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 201
BssSI CACGAG 1 cut(s) 130
BssT1I CCWWGG 1 cut(s) 201
Bst2BI CACGAG 1 cut(s) 130
Bst4CI ACNGT 3 cut(s) 79, 91, 309
BstF5I GGATG 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 352
BstSFI CTRYAG 1 cut(s) 270
BstV1I GCAGC 2 cut(s) 49, 71
BtsCI GGATG 1 cut(s) 211
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 2 cut(s) 264, 305
CaiI CAGNNNCTG 1 cut(s) 65
CseI GACGC 1 cut(s) 187
Csp6I GTAC 1 cut(s) 284
CspCI CAANNNNNGTGG 2 cut(s) 149, 184
CviJI RGCY 7 cut(s) 9, 17, 27, 41, 62, 110, 125
CviKI_1 RGCY 7 cut(s) 9, 17, 27, 41, 62, 110, 125
CviQI GTAC 1 cut(s) 284
DraIII CACNNNGTG 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 201
EcoRI GAATTC 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaiI YATR 4 cut(s) 213, 251, 266, 361
FaqI GGGAC 2 cut(s) 77, 190
Fnu4HI GCNGC 2 cut(s) 60, 63
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 2 cut(s) 60, 63
GluI GCNGC 2 cut(s) 60, 63
HapII CCGG 1 cut(s) 354
HgaI GACGC 1 cut(s) 187
HpaII CCGG 1 cut(s) 354
HphI GGTGA 1 cut(s) 304
Hpy188III TCNNGA 2 cut(s) 31, 241
Hpy99I CGWCG 1 cut(s) 331
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 3 cut(s) 79, 91, 309
HpyCH4V TGCA 4 cut(s) 59, 160, 197, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
LpnPI CCDG 2 cut(s) 51, 335
Lsp1109I GCAGC 2 cut(s) 49, 71
MboII GAAGA 1 cut(s) 311
MfeI CAATTG 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 3 cut(s) 69, 82, 161
MnlI CCTC 1 cut(s) 106
MseI TTAA 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 1 cut(s) 354
MspR9I CCNGG 1 cut(s) 354
MunI CAATTG 1 cut(s) 82
Mva1269I GAATGC 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 278
NciI CCSGG 1 cut(s) 354
PctI GAATGC 1 cut(s) 199
PkrI GCNGC 2 cut(s) 61, 64
PstI CTGCAG 1 cut(s) 274
PstNI CAGNNNCTG 1 cut(s) 65
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
SaqAI TTAA 1 cut(s) 224
SatI GCNGC 2 cut(s) 60, 63
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 1 cut(s) 137
SetI ASST 3 cut(s) 29, 64, 112
SfcI CTRYAG 1 cut(s) 270
Sse9I AATT 3 cut(s) 69, 82, 161
StyD4I CCNGG 1 cut(s) 352
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 3 cut(s) 79, 91, 309
TasI AATT 3 cut(s) 69, 82, 161
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TscAI CASTG 2 cut(s) 264, 312
TseI GCWGC 2 cut(s) 59, 62
TspDTI ATGAA 2 cut(s) 65, 222
TspRI CASTG 2 cut(s) 264, 312
XapI RAATTY 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.