Rroxscaffold_2G00153070

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002685
Physical Location & Seq
Forward (+)
89870270 .. 89870958
689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00153070.1

Sequence Viewer

Length: 537 bp
ATGGTTAGTTCTCAACTAGGGTTAATTGGGTGCTCGCTTCTTGTTGTAGCACTGGCCTTACTGAAGGGTGCCACCGCTGAGAGCTACACCGTCGGAGAAGATTTAGGCTGGAACATTCCTCCTTCTGGTTCAGTTGCCTACTCAACCTGGGCCGCCTCGAAGCGATTTCAGCTCGGTGACGTAGTCGTGTTTAAGTGGACTGGACCGCACACGGTGGCTGAAGTGACACAGGCTGATTTTTCGAGCTGCACAAAGTCGAACCCCATTGCTCTCTATGATTCCAGCCCGGCAAGAATTACGTTGAGCTCGCTTAACGGTACTCGGTACTTCATCTGCACCGAGGACAATCACTGCAGCGTTTTAGGACAGAAGGTGGCCATTACAATGGGAGGAACAGGTCAATATACACCGGGAGATGATAACAGTGATGATGATGACGACTGGTGGAGATGGAACAGTGCTTCTTCTCTCACCATTGGTACTGCCTTGTCTGCAGTCATATCCACTGCAGTCATATTTTTCTTGAACTATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

178

Amino Acids

18.99

Weight (kDa)

4.51

Isoelectric Point (pI)

30.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 37 - 119 3.4e-20 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 68
AciI CCGC 3 cut(s) 75, 153, 206
AcoI YGGCCR 1 cut(s) 375
AcuI CTGAAG 2 cut(s) 83, 240
AdeI CACNNNGTG 1 cut(s) 214
AfaI GTAC 3 cut(s) 319, 326, 481
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 1 cut(s) 526
AjnI CCWGG 1 cut(s) 146
AluBI AGCT 4 cut(s) 84, 172, 246, 306
AluI AGCT 4 cut(s) 84, 172, 246, 306
Alw21I GWGCWC 2 cut(s) 35, 308
AoxI GGCC 3 cut(s) 54, 150, 375
ApeKI GCWGC 2 cut(s) 246, 354
AspS9I GGNCC 2 cut(s) 150, 203
AsuC2I CCSGG 2 cut(s) 287, 411
AsuHPI GGTGA 2 cut(s) 188, 463
AvaII GGWCC 1 cut(s) 203
BalI TGGCCA 1 cut(s) 377
BanI GGYRCC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 308
Bbv12I GWGCWC 2 cut(s) 35, 308
BbvI GCAGC 2 cut(s) 233, 366
BccI CCATC 1 cut(s) 444
BciT130I CCWGG 1 cut(s) 148
BcnI CCSGG 2 cut(s) 287, 411
BfaI CTAG 1 cut(s) 17
BfmI CTRYAG 3 cut(s) 352, 492, 507
BisI GCNGC 3 cut(s) 153, 247, 355
BlsI GCNGC 3 cut(s) 154, 248, 356
Bme1390I CCNGG 3 cut(s) 148, 287, 411
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 2 cut(s) 150, 203
BmiI GGNNCC 1 cut(s) 70
BmrFI CCNGG 3 cut(s) 148, 287, 411
BpuMI CCSGG 2 cut(s) 287, 411
BsaJI CCNNGG 2 cut(s) 147, 339
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 3 cut(s) 57, 205, 446
Bse3DI GCAATG 1 cut(s) 264
BseBI CCWGG 1 cut(s) 148
BseDI CCNNGG 2 cut(s) 147, 339
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMI GCAATG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 3 cut(s) 57, 205, 446
BseXI GCAGC 2 cut(s) 233, 366
BsgI GTGCAG 2 cut(s) 232, 319
BshFI GGCC 3 cut(s) 56, 152, 377
BshNI GGYRCC 1 cut(s) 68
BsiHKAI GWGCWC 2 cut(s) 35, 308
BsiSI CCGG 2 cut(s) 287, 410
BslI CCNNNNNNNGG 1 cut(s) 125
BsnI GGCC 3 cut(s) 56, 152, 377
Bsp1286I GDGCHC 2 cut(s) 35, 308
BspACI CCGC 3 cut(s) 75, 153, 206
BspANI GGCC 3 cut(s) 56, 152, 377
BspCNI CTCAG 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 70
BspMAI CTGCAG 3 cut(s) 356, 496, 511
BspT107I GGYRCC 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 264
BsrI ACTGG 3 cut(s) 57, 205, 446
BssECI CCNNGG 2 cut(s) 147, 339
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 5 cut(s) 91, 214, 317, 425, 458
BstC8I GCNNGC 2 cut(s) 35, 308
BstDEI CTNAG 1 cut(s) 78
BstMWI GCNNNNNNNGC 2 cut(s) 169, 491
BstNI CCWGG 1 cut(s) 148
BstSCI CCNGG 3 cut(s) 146, 285, 409
BstSFI CTRYAG 3 cut(s) 352, 492, 507
BstV1I GCAGC 2 cut(s) 233, 366
BstXI CCANNNNNNTGG 1 cut(s) 385
BsuRI GGCC 3 cut(s) 56, 152, 377
BtsI GCAGTG 2 cut(s) 349, 504
BtsIMutI CAGTG 5 cut(s) 50, 349, 430, 463, 504
Cac8I GCNNGC 2 cut(s) 35, 308
Cfr13I GGNCC 2 cut(s) 150, 203
Csp6I GTAC 3 cut(s) 318, 325, 480
CviQI GTAC 3 cut(s) 318, 325, 480
DdeI CTNAG 1 cut(s) 78
DraIII CACNNNGTG 1 cut(s) 214
EaeI YGGCCR 1 cut(s) 375
Ecl136II GAGCTC 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 203
Eco53kI GAGCTC 1 cut(s) 306
Eco57I CTGAAG 2 cut(s) 83, 240
EcoICRI GAGCTC 1 cut(s) 306
EcoRII CCWGG 1 cut(s) 146
EcoT38I GRGCYC 1 cut(s) 308
FaiI YATR 5 cut(s) 276, 405, 500, 515, 531
Fnu4HI GCNGC 3 cut(s) 153, 247, 355
FriOI GRGCYC 1 cut(s) 308
Fsp4HI GCNGC 3 cut(s) 153, 247, 355
FspBI CTAG 1 cut(s) 17
GluI GCNGC 3 cut(s) 153, 247, 355
HaeIII GGCC 3 cut(s) 56, 152, 377
HapII CCGG 2 cut(s) 287, 410
HinfI GANTC 1 cut(s) 278
HpaII CCGG 2 cut(s) 287, 410
HphI GGTGA 2 cut(s) 188, 463
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 1 cut(s) 95
Hpy188III TCNNGA 1 cut(s) 523
Hpy8I GTNNAC 1 cut(s) 198
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 3 cut(s) 58, 132, 364
HpyCH4III ACNGT 5 cut(s) 91, 214, 317, 425, 458
HpyCH4IV ACGT 2 cut(s) 180, 299
HpyCH4V TGCA 5 cut(s) 249, 336, 354, 494, 509
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 491
HpyF3I CTNAG 1 cut(s) 78
HpySE526I ACGT 2 cut(s) 180, 299
Lsp1109I GCAGC 2 cut(s) 233, 366
MaeI CTAG 1 cut(s) 17
MaeII ACGT 2 cut(s) 180, 299
MaeIII GTNAC 2 cut(s) 176, 223
MboII GAAGA 2 cut(s) 110, 456
MhlI GDGCHC 2 cut(s) 35, 308
MlsI TGGCCA 1 cut(s) 377
MluCI AATT 2 cut(s) 24, 294
MluNI TGGCCA 1 cut(s) 377
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 4 cut(s) 129, 166, 334, 383
Mox20I TGGCCA 1 cut(s) 377
MscI TGGCCA 1 cut(s) 377
MseI TTAA 4 cut(s) 23, 192, 312, 535
MslI CAYNNNNRTG 1 cut(s) 383
Msp20I TGGCCA 1 cut(s) 377
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 2 cut(s) 287, 410
MspR9I CCNGG 3 cut(s) 148, 287, 411
MvaI CCWGG 1 cut(s) 148
MwoI GCNNNNNNNGC 2 cut(s) 169, 491
NciI CCSGG 2 cut(s) 287, 411
NlaIV GGNNCC 1 cut(s) 70
NmuCI GTSAC 2 cut(s) 176, 223
PfeI GAWTC 1 cut(s) 278
PflFI GACNNNGTC 1 cut(s) 182
PkrI GCNGC 3 cut(s) 154, 248, 356
Psp124BI GAGCTC 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 70
PspPI GGNCC 2 cut(s) 150, 203
PstI CTGCAG 3 cut(s) 356, 496, 511
PsyI GACNNNGTC 1 cut(s) 182
RsaI GTAC 3 cut(s) 319, 326, 481
RsaNI GTAC 3 cut(s) 318, 325, 480
RseI CAYNNNNRTG 1 cut(s) 383
SacI GAGCTC 1 cut(s) 308
SaqAI TTAA 4 cut(s) 23, 192, 312, 535
SatI GCNGC 3 cut(s) 153, 247, 355
Sau96I GGNCC 2 cut(s) 150, 203
ScrFI CCNGG 3 cut(s) 148, 287, 411
SduI GDGCHC 2 cut(s) 35, 308
SetI ASST 9 cut(s) 86, 149, 174, 183, 248, 302, 308, 375, 400
SfcI CTRYAG 3 cut(s) 352, 492, 507
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 383
Sse9I AATT 2 cut(s) 24, 294
SsiI CCGC 3 cut(s) 75, 153, 206
SspMI CTAG 1 cut(s) 17
SstI GAGCTC 1 cut(s) 308
StyD4I CCNGG 3 cut(s) 146, 285, 409
TaaI ACNGT 5 cut(s) 91, 214, 317, 425, 458
TaiI ACGT 2 cut(s) 183, 302
TaqI TCGA 3 cut(s) 158, 242, 257
TasI AATT 2 cut(s) 24, 294
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 4 cut(s) 23, 192, 312, 535
Tru9I TTAA 4 cut(s) 23, 192, 312, 535
TscAI CASTG 5 cut(s) 57, 356, 430, 463, 511
TseFI GTSAC 2 cut(s) 176, 223
TseI GCWGC 2 cut(s) 246, 354
Tsp45I GTSAC 2 cut(s) 176, 223
TspDTI ATGAA 1 cut(s) 319
TspRI CASTG 5 cut(s) 57, 356, 430, 463, 511
Tth111I GACNNNGTC 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 203
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.